Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TDo	25837	2024-06-29	2022-01-02	3.15	4.00	—	3.7	0.004	0.57	0.0	0.04	14.51	0.00	2.284	4.72	0.00	4.1	95.9	0.0	-1.16	0.73	0.68	1.65	3.7	0.002	0.59	0.0	0.04	14.69	0.00	2.230	4.92	0.59	3.9	96.1	0.0	1.21	0.61	0.86	0.85	1.79	19572	2520	12	0	6	0	0	logfile
✔	7Wi3	32520	2024-06-29	2022-01-02	4.0	3.02	—	2.9	0.010	1.15	37.0	0.07	13.94	0.01	1.363	17.43	1.47	8.1	91.9	0.0	-1.49	0.76	0.75	—	3.0	0.008	0.88	1.0	0.05	17.09	0.01	1.955	19.30	5.31	7.6	92.4	0.0	-0.18	0.64	0.76	0.75	—	69304	8688	48	0	0	0	0	logfile
✔	7WHZ	32516	2024-06-25	2022-01-01	3.42	3.64	—	3.7	0.007	0.94	0.0	0.06	14.21	0.01	2.276	5.93	0.40	8.4	91.6	0.0	-4.20	0.67	0.81	2.33	3.7	0.006	0.67	0.0	0.05	16.12	0.00	2.150	11.10	4.31	8.2	91.8	0.0	-2.22	0.53	0.67	0.84	2.56	6810	887	8	0	1	0	0	logfile
✔	7Wi0	32517	2024-06-25	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.37	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.78	0.0	0.04	16.24	0.00	2.111	12.72	3.63	8.7	91.3	0.0	-2.34	1.83	0.72	0.82	2.21	6823	886	8	0	1	0	0	logfile
✔	7WHT	32511	2024-06-29	2021-12-31	3.5	3.75	—	3.7	0.006	0.90	2.0	0.06	18.72	0.01	1.473	13.07	1.38	9.5	90.5	0.0	-1.32	0.67	0.75	2.76	3.7	0.003	0.62	0.0	0.05	15.50	0.01	1.950	11.25	2.10	9.7	90.3	0.0	-1.40	1.16	0.78	0.81	2.23	16980	2160	12	0	12	0	0	logfile
✔	7WHN	32505	2024-06-26	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.09	0.00	2.279	5.47	0.67	2.4	97.6	0.0	0.96	0.38	0.37	0.81	2.17	9284	1170	1	0	0	0	0	logfile
✔	7WHW	32513	2024-06-27	2021-12-31	3.1	2.64	—	3.0	0.009	1.17	0.0	0.07	12.72	0.01	2.107	7.84	0.54	8.4	91.6	0.1	-5.16	0.62	0.76	3.64	3.0	0.003	0.66	0.0	0.04	14.70	0.00	1.970	13.50	2.63	6.9	93.1	0.0	-1.67	0.64	0.63	0.80	3.04	11978	1488	4	0	5	0	0	logfile
✔	7WHP	32507	2024-06-29	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	15.13	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.003	0.54	0.0	0.04	16.53	0.00	2.068	8.54	2.76	2.6	97.3	0.0	-0.46	1.53	0.30	0.77	2.41	17038	2114	4	0	6	0	0	logfile
✔	7TDE	25826	2024-06-29	2021-12-31	3.2	2.37	3.26	2.2	0.006	0.68	0.0	0.04	12.53	0.01	2.312	1.69	0.52	1.8	98.2	0.0	0.04	0.68	0.74	3.07	2.3	0.003	0.51	0.0	0.03	15.31	0.00	1.998	4.85	1.04	2.1	97.9	0.0	2.80	1.85	0.69	0.75	2.76	17734	1075	2	0	0	0	8888	logfile
✔	7WHS	32510	2024-06-29	2021-12-31	3.1	3.49	—	3.5	0.005	0.78	1.0	0.06	16.31	0.01	2.197	8.40	0.33	8.2	91.8	0.0	-1.09	0.68	0.79	3.09	3.5	0.003	0.58	0.0	0.05	17.27	0.00	2.090	9.56	2.39	7.4	92.6	0.0	-1.32	1.55	0.70	0.82	3.01	17232	2196	12	0	12	0	0	logfile
✔	7WHV	32512	2024-06-27	2021-12-31	2.8	2.22	—	2.7	0.016	1.29	0.0	0.08	12.09	0.01	2.100	7.72	0.60	7.0	92.9	0.1	-3.98	0.65	0.78	4.48	2.7	0.005	0.70	0.0	0.05	15.13	0.00	2.024	13.20	3.17	5.6	94.4	0.0	-0.76	1.24	0.66	0.80	3.51	12331	1520	4	0	7	0	0	logfile
✔	7WHR	32509	2024-06-29	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.003	0.63	0.0	0.05	14.84	0.00	2.197	9.95	1.64	6.6	93.3	0.1	-2.43	0.34	0.63	0.70	1.91	16914	2184	6	0	0	0	0	logfile
✔	7TD6	25824	2024-06-24	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.006	0.84	0.0	0.05	18.31	0.00	2.252	12.18	4.03	8.5	91.5	0.0	-4.02	2.29	0.43	0.77	4.22	5575	690	5	0	0	0	0	logfile
✔	7TDD	25825	2024-06-30	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.7	0.004	0.58	0.0	0.04	15.47	0.00	1.972	7.14	1.20	2.0	97.9	0.1	2.32	3.04	0.67	0.68	2.47	20031	1211	2	0	0	0	10025	logfile
✔	7WH8	32497	2024-06-24	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.004	0.66	0.0	0.05	15.74	0.00	2.166	7.31	2.78	8.6	91.4	0.0	-1.31	1.18	0.70	0.82	3.34	5479	715	3	0	0	0	0	logfile
✔	7WGZ	32493	2024-06-30	2021-12-29	4.5	5.31	—	4.5	0.007	0.71	0.0	0.05	15.46	0.00	1.262	7.93	0.04	5.2	94.7	0.1	-0.64	0.84	0.79	—	4.5	0.003	0.58	0.0	0.04	12.95	0.00	2.125	13.11	0.00	5.7	94.2	0.1	-0.10	0.47	0.86	0.83	—	21920	2879	11	0	25	0	0	logfile
✔	7WGR	32485	2024-06-27	2021-12-28	2.92	3.14	—	3.2	0.007	0.99	3.0	0.06	14.82	0.01	1.877	5.78	0.54	4.6	95.1	0.4	-0.28	0.69	0.78	2.90	3.2	0.004	0.85	1.0	0.04	17.15	0.01	1.892	8.45	2.49	3.7	96.1	0.1	-0.12	0.46	0.69	0.82	2.84	13614	1700	4	0	6	0	0	logfile
✔	7WGC	32483	2024-06-25	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.72	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.65	0.0	0.04	16.13	0.00	2.128	13.40	2.00	5.3	94.7	0.0	0.00	0.36	0.56	0.55	0.77	6527	795	4	0	5	0	0	logfile
✔	7WGE	32484	2024-06-25	2021-12-28	3.4	3.56	—	3.6	0.003	0.63	0.0	0.04	15.02	0.01	2.182	11.60	0.28	6.8	93.1	0.1	-0.43	0.62	0.65	1.29	3.6	0.003	0.75	0.0	0.04	17.33	0.00	1.951	11.75	2.08	6.8	93.1	0.1	-1.45	2.91	0.67	0.74	1.33	6460	804	3	0	2	0	0	logfile
✔	7TCP	25816	2024-06-28	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.006	0.60	0.0	0.04	12.89	0.00	2.125	6.46	2.46	4.0	96.0	0.0	1.96	0.27	0.71	0.83	2.42	14992	1912	12	0	12	0	0	logfile

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