Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WFG	32465	2024-06-26	2021-12-26	4.33	4.89	—	4.3	0.006	1.01	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.003	0.78	0.0	0.05	12.56	0.01	2.095	21.21	0.36	11.0	89.0	0.1	-2.60	1.58	0.71	0.75	—	9836	1246	11	0	125	0	0	logfile
✔	7WF3	32459	2024-06-30	2021-12-25	3.4	3.01	—	3.0	0.012	1.22	32.0	0.09	15.74	0.01	2.074	4.00	7.69	3.7	96.1	0.1	-1.54	0.56	0.77	3.55	3.0	0.002	0.50	0.0	0.04	15.46	0.00	2.200	4.03	2.01	1.7	98.2	0.1	0.74	1.02	0.69	0.88	3.11	22100	2744	25	0	8	116	0	logfile
✔	7WF4	32460	2024-06-30	2021-12-25	3.4	2.86	—	2.8	0.009	1.05	8.0	0.07	14.45	0.01	2.085	6.38	6.01	3.8	95.7	0.4	-1.41	0.61	0.73	3.58	2.8	0.004	0.62	0.0	0.04	15.43	0.00	2.123	5.16	2.58	3.3	96.3	0.4	0.66	1.39	0.72	0.85	3.62	22143	2760	25	0	7	100	0	logfile
✔	7WED	32447	2024-06-24	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.005	1.33	1.0	0.07	16.81	0.01	2.258	8.50	4.36	7.3	92.7	0.0	-1.19	1.13	0.57	0.78	1.96	3358	431	3	0	0	0	0	logfile
✔	7TC8	25805	2024-06-30	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.50	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.002	0.41	0.0	0.04	17.26	0.00	1.889	19.46	1.91	1.8	98.2	0.0	2.10	0.28	0.74	0.86	5.02	20567	2113	8	0	4	0	3200	logfile
✔	7WEE	32448	2024-06-24	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.004	0.71	0.0	0.05	15.53	0.00	2.073	11.84	3.77	7.6	92.4	0.0	-1.48	0.45	0.48	0.82	—	3350	429	3	0	0	0	0	logfile
✔	7TCi	25813	2024-06-28	2021-12-23	3.9	4.11	—	4.1	0.006	0.62	0.0	0.04	13.44	0.00	2.282	6.98	2.95	2.2	97.8	0.0	2.98	0.64	0.81	1.85	4.1	0.003	0.62	0.0	0.04	16.68	0.00	2.171	10.09	5.70	2.1	97.9	0.0	2.24	1.30	0.66	0.79	1.26	15084	1916	16	0	16	0	0	logfile
✔	7Qo9	14087	2024-06-26	2021-12-23	3.88	4.22	—	4.1	0.004	0.76	6.0	0.06	16.66	0.01	2.179	10.13	1.29	9.2	90.3	0.5	-1.18	0.68	0.78	1.87	4.1	0.003	0.69	0.0	0.04	16.38	0.00	2.184	12.33	1.98	9.7	90.0	0.3	-1.15	1.56	0.68	0.78	1.83	9180	1166	6	0	9	3	0	logfile
✔	7WEF	32449	2024-06-24	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.64	0.0	0.04	14.83	0.00	2.179	8.31	4.19	6.6	93.4	0.0	-1.42	0.35	0.55	0.77	1.98	3328	432	3	0	0	0	0	logfile
✔	7Qo1	14080	2024-06-28	2021-12-23	4.4	3.65	4.44	3.5	0.012	1.85	2.0	0.09	18.41	0.02	2.337	2.24	1.51	5.3	94.6	0.2	-1.82	0.79	0.60	—	3.5	0.003	0.68	0.0	0.04	17.67	0.00	1.407	12.41	0.00	3.8	96.2	0.0	-0.71	1.05	0.79	0.60	—	14179	1694	9	62	1	0	0	logfile
✔	7TC7	25804	2024-06-30	2021-12-23	2.9	2.75	—	2.9	0.007	0.58	0.0	0.04	13.89	0.00	1.792	14.53	0.17	2.3	97.7	0.0	1.00	0.72	0.86	4.97	2.9	0.002	0.41	0.0	0.04	15.77	0.00	1.945	16.73	1.40	2.1	97.9	0.0	1.68	0.31	0.73	0.87	4.30	20567	2113	8	0	4	0	3200	logfile
✔	7TC0	25803	2024-06-27	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	3.2	0.003	0.64	0.0	0.04	15.03	0.00	2.151	6.74	2.70	5.0	95.0	0.0	0.69	1.31	0.77	0.89	2.28	13809	1781	4	0	11	0	0	logfile
✔	7TBW	25800	2024-06-28	2021-12-22	3.1	3.10	2.87	3.2	0.003	0.62	0.0	0.04	14.88	0.00	2.101	8.64	1.23	5.2	94.8	0.0	-2.02	0.67	0.79	1.46	3.2	0.003	0.63	0.0	0.04	15.05	0.00	1.983	9.85	2.95	5.8	94.2	0.0	0.33	0.72	0.71	0.87	2.28	15338	1928	4	0	14	0	0	logfile
✔	7TBY	25801	2024-06-27	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	15.63	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.8	0.003	0.67	0.0	0.04	14.91	0.00	2.107	9.36	2.44	5.8	94.2	0.0	0.24	1.35	0.72	0.83	—	13281	1788	4	0	10	0	0	logfile
✔	7TBZ	25802	2024-06-27	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	14.93	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.67	0.0	0.04	12.03	0.00	2.157	9.99	0.00	5.9	94.1	0.0	0.20	2.65	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7TAN	25777	2024-06-27	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.16	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.003	0.51	0.0	0.03	27.66	0.00	2.199	3.02	2.03	2.0	98.0	0.0	2.22	0.32	0.84	0.87	1.95	12119	768	12	294	0	0	0	logfile
✔	7WDK	32438	2024-06-26	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.004	0.64	0.0	0.04	16.24	0.00	2.163	11.07	2.16	7.0	93.0	0.0	-0.76	0.31	0.59	0.66	1.85	9461	1215	2	0	0	0	0	logfile
✔	7TBF	25797	2024-06-25	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.74	0.0	0.04	15.30	0.00	2.226	8.39	3.58	14.2	85.3	0.5	-2.51	0.99	0.84	0.85	2.79	6617	857	6	0	2	0	0	logfile
✔	7TAP	25780	2024-06-30	2021-12-21	2.8	3.00	—	3.0	0.013	1.47	4.0	0.07	15.28	0.01	2.225	8.19	1.37	1.3	98.6	0.1	0.26	0.64	0.81	3.41	3.0	0.004	0.55	0.0	0.04	15.98	0.00	2.122	9.60	1.67	1.4	98.5	0.0	1.41	2.34	0.66	0.84	3.18	22520	2915	22	0	8	0	0	logfile
✔	7WD9	32435	2024-06-29	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.63	0.0	0.04	13.64	0.00	1.827	11.38	1.34	4.5	95.4	0.1	-0.67	1.31	0.75	0.68	0.98	69720	4533	9	0	0	0	34404	logfile

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