Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TBF	25797	2024-06-25	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.74	0.0	0.04	15.30	0.00	2.226	8.39	3.58	14.2	85.3	0.5	-2.51	0.99	0.84	0.85	2.79	6617	857	6	0	2	0	0	logfile
✔	7WD8	32434	2024-06-24	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.72	0.0	0.04	12.54	0.00	2.195	14.59	0.00	3.1	96.7	0.2	-0.50	1.64	0.63	0.67	—	4029	524	4	0	0	0	0	logfile
✔	7QND	14075	2024-06-29	2021-12-20	3.4	3.55	—	3.4	0.003	0.46	0.0	0.04	10.27	0.00	2.210	4.79	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.67	0.0	0.04	13.55	0.00	2.107	10.48	2.02	1.6	98.4	0.0	1.27	2.21	0.76	0.87	3.69	16810	1995	19	0	33	0	0	logfile
✔	7TAC	25769	2024-06-27	2021-12-20	3.6	3.94	—	3.9	0.004	0.86	0.0	0.05	14.71	0.01	2.149	12.22	0.00	2.3	97.7	0.0	0.94	0.66	0.69	1.31	3.9	0.003	0.64	0.0	0.04	16.86	0.00	2.158	8.84	2.03	2.5	97.5	0.0	2.80	0.60	0.66	0.71	1.03	11842	1526	12	0	6	0	0	logfile
✔	7QN9	14071	2024-06-28	2021-12-20	2.9	3.47	—	3.1	0.003	0.64	0.0	0.05	13.26	0.01	2.164	6.25	0.48	2.1	97.9	0.0	0.56	0.78	0.86	4.01	3.2	0.003	0.70	0.0	0.04	13.96	0.00	2.159	9.29	1.74	2.0	98.0	0.0	1.33	2.78	0.79	0.89	4.06	15696	1889	19	0	31	0	0	logfile
✔	7WCM	32424	2024-06-25	2021-12-20	2.33	2.14	—	2.2	0.003	0.61	0.0	0.04	14.07	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.003	0.56	0.0	0.04	15.87	0.00	2.199	3.42	1.02	2.2	97.8	0.0	1.50	0.32	0.63	0.87	4.05	8232	1047	5	0	1	0	0	logfile
✔	7WCo	32426	2024-06-26	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.004	0.76	0.0	0.05	15.23	0.01	2.190	10.00	4.97	9.6	90.4	0.0	-2.96	1.54	0.56	0.85	2.86	8950	1195	15	0	0	0	0	logfile
✔	7QN8	14070	2024-06-29	2021-12-20	3.1	3.39	—	3.2	0.003	0.46	0.0	0.04	10.68	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.005	0.64	0.0	0.05	13.03	0.00	2.171	8.07	1.52	1.8	98.2	0.0	1.85	0.80	0.80	0.91	4.05	16755	1992	19	0	32	0	0	logfile
✔	7QLA	14066	2024-06-25	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.69	0.0	0.04	15.87	0.00	2.148	12.97	2.85	5.3	94.7	0.0	-0.41	2.24	0.72	0.76	1.49	6837	874	2	0	0	0	0	logfile
✔	7TAi	25775	2024-06-26	2021-12-20	3.2	3.59	3.19	3.5	0.006	0.86	0.0	0.05	19.15	0.01	2.087	12.50	1.06	2.8	97.2	0.0	0.97	0.71	0.84	2.65	3.5	0.005	0.66	0.0	0.04	15.71	0.00	2.071	11.25	1.59	3.7	96.3	0.0	1.43	2.41	0.77	0.87	2.45	11109	1272	6	0	18	0	0	logfile
✔	7QN6	14068	2024-06-29	2021-12-20	2.9	2.96	—	2.9	0.003	0.46	0.0	0.04	12.10	0.00	2.205	5.05	0.39	0.9	99.1	0.0	2.50	0.74	0.86	4.53	2.8	0.004	0.68	0.0	0.05	15.03	0.00	2.039	8.13	2.47	1.8	98.2	0.0	1.63	1.47	0.76	0.90	4.53	16821	1995	20	0	32	0	0	logfile
✔	7QNA	14072	2024-06-28	2021-12-20	3.0	3.58	—	3.3	0.003	0.48	0.0	0.04	11.46	0.00	2.271	4.69	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.003	0.66	0.0	0.04	13.34	0.00	2.168	7.88	1.45	2.0	98.0	0.0	1.26	2.63	0.77	0.89	4.11	14777	1763	16	0	29	0	0	logfile
✔	7WCR	32428	2024-06-24	2021-12-20	3.5	3.71	—	4.0	0.003	0.71	0.0	0.05	12.88	0.01	1.713	4.50	1.28	2.7	96.9	0.3	-2.76	0.57	0.64	1.03	3.7	0.003	0.71	0.0	0.04	15.77	0.00	2.131	11.30	3.28	4.2	95.8	0.0	-0.78	0.80	0.60	0.69	1.36	4880	628	3	0	0	0	0	logfile
✔	7QNB	14073	2024-06-28	2021-12-20	3.1	3.62	—	3.3	0.003	0.46	0.0	0.04	11.20	0.00	2.241	5.47	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.60	0.0	0.04	12.66	0.00	2.153	8.35	1.57	2.5	97.5	0.0	1.38	2.14	0.78	0.89	3.75	14793	1767	15	0	24	0	0	logfile
✔	7TAD	25771	2024-06-25	2021-12-20	3.6	3.82	—	3.8	0.003	0.70	0.0	0.04	14.28	0.01	2.126	10.39	0.00	2.8	97.2	0.0	0.68	0.62	0.64	1.42	3.8	0.002	0.59	0.0	0.04	16.03	0.00	2.191	8.10	1.12	1.7	98.3	0.0	2.74	0.49	0.64	0.67	1.20	8550	1113	8	0	4	0	0	logfile
✔	7WCN	32425	2024-06-25	2021-12-20	2.87	2.37	—	2.8	0.005	0.70	1.0	0.05	14.77	0.00	2.257	4.26	0.00	3.9	96.1	0.0	0.37	0.59	0.83	3.43	2.8	0.003	0.55	0.0	0.04	16.83	0.00	2.260	4.57	2.82	3.4	96.6	0.0	0.91	0.33	0.58	0.84	2.85	8252	1049	5	0	1	0	0	logfile
✔	7WCK	32423	2024-06-24	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.003	0.81	0.0	0.05	15.00	0.01	2.245	16.84	2.25	7.1	92.4	0.5	-2.39	0.50	0.68	0.81	2.01	3245	416	3	0	0	0	0	logfile
✔	7QNC	14074	2024-06-28	2021-12-20	2.9	3.35	—	3.1	0.003	0.58	0.0	0.05	12.80	0.01	2.276	3.01	0.48	1.7	98.3	0.0	0.92	0.79	0.88	4.62	3.1	0.005	0.91	1.0	0.05	14.13	0.00	1.774	9.99	1.97	1.5	98.5	0.0	1.70	1.17	0.79	0.90	4.52	15861	1881	19	0	39	0	0	logfile
✔	7QL4	14063	2024-06-25	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.005	1.22	0.0	0.05	15.22	0.01	2.037	8.35	2.78	2.5	97.5	0.0	-2.02	3.12	0.31	0.75	3.50	7074	456	6	0	0	0	3606	logfile
✔	7QKZ	14058	2024-06-24	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.011	3.64	0.0	0.38	18.80	0.01	2.113	13.00	1.01	2.5	97.5	0.0	-1.04	5.47	0.34	0.64	6.35	1701	99	9	0	0	0	891	logfile

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