Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T9L	25761	2024-06-25	2021-12-19	2.66	3.24	—	3.1	0.006	0.96	0.0	0.06	14.12	0.01	2.276	3.89	0.14	2.8	97.2	0.0	-1.53	0.78	0.84	3.31	3.1	0.003	0.70	0.0	0.04	16.61	0.00	2.174	9.74	2.71	2.4	97.6	0.0	1.40	2.14	0.77	0.84	3.16	6567	796	4	0	7	0	0	logfile
✔	7QL2	14061	2024-06-24	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.3	0.003	0.54	0.0	0.05	12.51	0.00	2.548	1.31	1.48	10.4	89.6	0.0	-3.05	1.13	0.23	0.72	3.90	2286	150	3	0	0	0	1179	logfile
✔	7QKU	14053	2024-06-24	2021-12-19	2.57	2.42	2.48	2.7	0.011	1.83	5.0	0.10	11.69	0.01	2.516	0.28	0.00	5.2	94.8	0.0	-1.72	0.47	0.88	5.27	2.7	0.004	1.30	1.0	0.05	17.77	0.00	2.344	4.97	1.52	2.7	97.3	0.0	-2.05	1.57	0.46	0.91	5.37	3456	453	6	0	0	0	0	logfile
✔	7QKX	14056	2024-06-25	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.002	0.53	0.0	0.05	12.55	0.00	2.085	3.67	0.52	0.7	99.3	0.0	-1.48	0.81	0.42	0.86	5.33	6822	438	6	0	0	0	3480	logfile
✔	7QL3	14062	2024-06-24	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.003	0.81	0.0	0.05	13.77	0.01	2.131	4.53	2.15	4.1	95.9	0.0	-2.57	1.14	0.43	0.83	4.68	3246	426	6	0	0	0	0	logfile
✔	7QL1	14060	2024-06-24	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.004	0.74	0.0	0.05	15.06	0.00	2.262	8.51	3.12	3.3	96.7	0.0	-2.38	1.66	0.38	0.81	4.29	1671	219	3	0	0	0	0	logfile
✔	7QKV	14054	2024-06-26	2021-12-19	3.23	2.84	3.19	3.3	0.011	1.92	0.0	0.09	12.28	0.02	2.512	0.73	0.00	3.5	96.5	0.0	-2.11	0.37	0.72	4.94	3.3	0.003	0.59	0.0	0.05	15.84	0.00	2.020	10.44	2.22	4.1	95.9	0.0	-2.44	1.34	0.41	0.82	5.98	9585	621	9	0	0	0	4887	logfile
✔	7T9G	25757	2024-06-27	2021-12-19	2.83	3.04	2.97	3.0	0.003	0.55	0.0	0.08	12.68	0.00	2.023	5.64	0.00	4.1	95.9	0.0	1.69	0.67	0.87	3.83	3.0	0.004	0.57	0.0	0.08	15.02	0.00	2.068	4.98	0.99	4.3	95.7	0.0	1.68	1.26	0.68	0.89	3.87	13649	890	6	0	4	5	6958	logfile
✔	7T9F	25756	2024-06-27	2021-12-19	3.23	3.51	3.49	3.5	0.004	0.84	0.0	0.09	13.18	0.00	1.988	5.27	0.28	3.6	96.4	0.0	0.16	0.64	0.80	3.49	3.5	0.003	0.62	0.0	0.08	14.94	0.00	1.940	10.47	0.71	4.3	95.7	0.0	0.99	0.51	0.65	0.84	3.44	13640	890	2	0	0	0	6958	logfile
✔	7QKW	14055	2024-06-24	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.53	0.0	0.05	16.60	0.00	2.475	2.77	2.54	5.4	94.6	0.0	-2.80	1.30	0.42	0.85	6.06	4707	306	6	0	0	0	2439	logfile
✔	7QL6	14065	2024-06-28	2021-12-19	3.23	3.65	3.39	3.6	0.004	0.67	1.0	0.05	15.26	0.00	2.258	7.26	0.60	3.3	96.7	0.0	0.66	0.72	0.80	3.00	3.5	0.003	0.58	0.0	0.04	14.04	0.00	2.161	10.02	2.07	2.9	97.1	0.0	0.67	0.64	0.72	0.82	3.10	16617	1990	15	0	38	0	0	logfile
✔	7QKZ	14058	2024-06-24	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.011	3.64	0.0	0.38	18.80	0.01	2.113	13.00	1.01	2.5	97.5	0.0	-1.04	5.47	0.34	0.64	6.35	1701	99	9	0	0	0	891	logfile
✔	7T9J	25759	2024-06-30	2021-12-19	2.79	3.38	—	3.2	0.006	0.86	0.0	0.06	13.01	0.01	2.225	4.49	0.17	1.7	98.2	0.0	0.20	0.77	0.71	1.43	3.1	0.003	0.61	0.0	0.04	14.50	0.00	2.178	8.33	1.89	2.3	97.7	0.0	0.66	1.11	0.80	0.82	2.56	21960	2703	24	0	58	0	0	logfile
✔	7QL5	14064	2024-06-29	2021-12-19	2.5	2.78	2.57	2.8	0.008	0.95	2.0	0.05	18.22	0.00	2.199	8.49	1.03	3.7	96.3	0.0	0.95	0.70	0.87	4.71	2.8	0.003	0.54	0.0	0.04	15.10	0.00	2.149	8.08	1.25	2.8	97.2	0.0	1.35	0.33	0.73	0.89	4.30	17028	1989	19	0	50	2	0	logfile
✔	7T96	25752	2024-06-27	2021-12-18	3.22	2.43	—	2.2	0.008	0.94	3.0	0.06	12.64	0.00	2.091	11.18	0.35	7.3	92.7	0.0	-0.99	0.77	0.77	2.54	2.2	0.003	0.65	0.0	0.04	15.25	0.00	2.098	8.94	3.57	5.0	95.0	0.0	0.15	0.43	0.79	0.80	1.62	8450	1122	6	0	2	0	0	logfile
✔	7T9A	25754	2024-06-30	2021-12-18	3.54	3.88	3.56	3.7	0.022	1.74	3.0	0.13	13.07	0.02	2.315	1.30	2.68	3.6	95.7	0.7	0.35	0.80	0.84	3.40	3.7	0.003	0.61	0.0	0.04	12.65	0.00	2.146	6.33	0.85	4.3	95.5	0.1	-0.01	2.42	0.80	0.85	2.83	21517	2598	41	0	96	0	0	logfile
✔	7T9B	25755	2024-06-30	2021-12-18	3.72	4.06	3.76	3.9	0.021	1.77	0.0	0.13	12.57	0.01	2.289	1.04	0.98	3.7	95.6	0.7	0.40	0.81	0.86	2.63	3.9	0.003	0.66	0.0	0.04	12.95	0.00	2.134	7.16	1.43	4.3	95.6	0.1	-0.23	1.38	0.81	0.85	2.34	21592	2595	42	0	101	0	0	logfile
✔	7QKo	14048	2024-06-29	2021-12-18	2.9	3.22	3.03	3.2	0.006	0.84	0.0	0.05	18.35	0.00	2.242	8.07	1.25	1.9	98.1	0.0	0.18	0.58	0.76	3.35	3.2	0.003	0.56	0.0	0.04	15.46	0.00	2.213	7.69	3.09	2.7	97.3	0.0	0.67	0.39	0.61	0.80	3.11	17042	1996	17	0	49	0	0	logfile
✔	7QKS	14050	2024-06-26	2021-12-18	3.1	3.39	3.08	3.3	0.005	0.74	0.0	0.05	14.59	0.01	2.210	4.65	0.10	1.8	98.2	0.0	0.65	0.75	0.87	2.33	3.3	0.003	0.52	0.0	0.04	15.48	0.00	2.295	5.61	1.78	1.8	98.2	0.0	1.32	0.35	0.74	0.89	1.84	9339	1199	1	0	1	0	0	logfile
✔	7T8T	25745	2024-06-29	2021-12-17	3.68	4.13	—	3.9	0.002	0.50	0.0	0.04	13.83	0.00	2.195	4.02	0.00	5.7	94.2	0.1	-0.81	0.80	0.74	1.85	3.9	0.002	0.51	0.0	0.04	14.94	0.00	2.117	6.20	0.93	6.8	93.0	0.2	-0.97	0.46	0.81	0.75	1.83	17434	1086	1	0	1	0	8626	logfile

• ← previous
• Page 228 of 420
• next →