Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QJX	14025	2024-06-27	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.005	1.22	0.0	0.31	16.18	0.01	2.137	3.97	2.05	7.0	93.0	0.0	-3.76	2.46	0.36	0.78	3.63	13860	900	12	0	0	0	7056	logfile
✔	7QK5	14038	2024-06-26	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.07	0.01	2.251	3.63	2.22	3.7	96.3	0.0	-1.68	1.63	0.36	0.83	7.23	10485	666	18	0	36	0	5337	logfile
✔	7QJZ	14027	2024-06-24	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.44	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.4	0.004	0.77	0.0	0.05	14.75	0.00	2.226	9.30	3.33	7.6	92.4	0.0	-3.19	2.58	0.37	0.77	4.32	3378	444	6	0	0	0	0	logfile
✔	7QKL	14046	2024-06-24	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.006	0.71	0.0	0.05	17.27	0.01	2.435	3.96	0.76	2.7	97.3	0.0	-1.28	1.99	0.45	0.91	8.47	3468	456	6	0	0	0	0	logfile
✔	7QKG	14041	2024-06-24	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.61	0.0	0.05	13.59	0.00	2.243	4.46	0.00	6.4	93.6	0.0	-1.39	1.16	0.35	0.83	4.80	2469	162	3	0	0	0	1278	logfile
✔	7QK2	14029	2024-06-24	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.004	0.67	0.0	0.05	16.79	0.00	2.157	5.14	2.96	2.9	97.1	0.0	-1.87	1.29	0.37	0.88	5.61	3246	426	6	0	0	0	0	logfile
✔	7T90	25749	2024-06-27	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.71	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.62	0.0	0.04	15.36	0.00	2.076	7.93	3.00	4.4	95.6	0.0	0.00	0.48	0.70	0.83	2.09	8451	1124	6	0	1	1	0	logfile
✔	7T94	25751	2024-06-27	2021-12-17	3.16	2.39	—	2.1	0.007	0.93	2.0	0.06	12.23	0.00	2.081	8.29	0.12	5.3	94.7	0.0	-0.68	0.77	0.77	3.26	2.1	0.003	0.63	0.0	0.04	14.90	0.00	2.149	7.62	3.94	5.3	94.7	0.0	-0.04	0.96	0.78	0.80	2.87	8388	1113	6	0	2	1	0	logfile
✔	7QKJ	14044	2024-06-25	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.80	0.0	0.05	15.73	0.00	2.083	10.18	2.90	7.1	92.9	0.0	-2.87	1.06	0.36	0.85	2.89	6888	900	12	0	0	0	0	logfile
✔	7QKi	14043	2024-06-25	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.003	0.57	0.0	0.05	11.60	0.00	2.124	3.82	0.00	4.7	95.3	0.0	-1.67	0.71	0.38	0.80	5.38	7074	456	6	0	0	0	3606	logfile
✔	7WBL	32405	2024-06-27	2021-12-17	3.4	3.46	—	3.5	0.004	0.60	0.0	0.04	15.43	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.51	0.0	0.04	16.42	0.00	2.247	5.68	1.01	2.4	97.5	0.1	1.44	0.31	0.66	0.78	1.51	6484	791	3	0	5	0	0	logfile
✔	7T8X	25748	2024-06-27	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.83	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.62	0.0	0.04	14.70	0.00	2.110	7.18	2.12	3.8	96.2	0.0	0.21	0.35	0.71	0.87	2.66	8555	1126	6	0	1	0	0	logfile
✔	7WBU	32406	2024-06-28	2021-12-17	3.42	3.70	—	3.6	0.003	0.59	1.0	0.04	15.37	0.01	2.145	7.00	0.37	2.2	97.8	0.0	0.89	0.67	0.73	1.75	3.6	0.003	0.59	0.0	0.04	16.73	0.00	2.169	8.05	1.95	3.0	97.0	0.0	0.74	0.47	0.69	0.79	1.96	7170	898	1	0	1	0	0	logfile
✔	7T8T	25745	2024-06-29	2021-12-17	3.68	4.13	—	3.9	0.002	0.50	0.0	0.04	13.83	0.00	2.195	4.02	0.00	5.7	94.2	0.1	-0.81	0.80	0.74	1.85	3.9	0.002	0.51	0.0	0.04	14.94	0.00	2.117	6.20	0.93	6.8	93.0	0.2	-0.97	0.46	0.81	0.75	1.83	17434	1086	1	0	1	0	8626	logfile
✔	7QKH	14042	2024-06-24	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.0	0.004	0.99	0.0	0.22	15.46	0.00	2.133	8.39	1.11	8.3	91.7	0.0	-2.81	2.23	0.33	0.71	4.39	3105	204	6	0	0	0	1593	logfile
✔	7QJV	14023	2024-06-27	2021-12-17	3.29	3.75	2.41	3.4	0.012	2.13	7.0	0.11	11.77	0.01	2.497	0.72	0.13	9.5	90.5	0.0	-2.07	0.44	0.77	2.75	3.4	0.003	0.55	0.0	0.05	12.72	0.00	2.054	5.78	0.51	4.8	95.2	0.0	-1.83	0.54	0.44	0.78	3.92	13860	900	12	0	0	0	7056	logfile
✔	7QKK	14045	2024-06-24	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.41	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.66	0.0	0.05	16.47	0.01	2.140	11.88	2.02	9.5	90.5	0.0	-3.55	1.61	0.35	0.79	2.90	3537	228	3	0	0	0	1803	logfile
✔	7QK1	14028	2024-06-24	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.005	0.77	0.0	0.05	16.62	0.00	2.249	6.12	5.56	3.4	96.6	0.0	-1.92	2.22	0.42	0.85	4.24	3444	450	6	0	0	0	0	logfile
✔	7QK6	14039	2024-06-24	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.003	0.60	0.0	0.05	16.13	0.00	2.371	4.46	0.69	5.8	94.2	0.0	-2.05	1.45	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7QJY	14026	2024-06-24	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.005	0.73	0.0	0.05	17.15	0.00	2.130	8.40	1.52	2.7	97.3	0.0	-2.07	2.60	0.35	0.83	4.04	3444	450	6	0	0	0	0	logfile

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