Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QJW	14024	2024-06-25	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.002	0.58	0.0	0.05	15.06	0.00	2.295	3.99	1.52	3.4	96.6	0.0	-1.63	1.46	0.38	0.78	5.04	7032	450	6	0	0	0	3588	logfile
✔	7QJX	14025	2024-06-27	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.005	1.22	0.0	0.31	16.18	0.01	2.137	3.97	2.05	7.0	93.0	0.0	-3.76	2.46	0.36	0.78	3.63	13860	900	12	0	0	0	7056	logfile
✔	7QKF	14040	2024-06-24	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.26	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.05	0.0	0.25	17.36	0.00	2.457	5.03	2.78	3.4	96.6	0.0	-3.35	1.37	0.40	0.86	5.81	3783	249	6	0	0	0	1926	logfile
✔	7WBJ	32401	2024-06-26	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.003	0.53	0.0	0.04	16.28	0.00	2.168	10.96	2.57	4.3	95.7	0.0	-0.35	0.34	0.64	0.76	1.50	8989	1146	6	0	0	0	0	logfile
✔	7WB0	32391	2024-06-26	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	21.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.006	0.67	0.0	0.04	21.89	0.00	2.129	10.54	1.57	6.2	93.6	0.1	0.13	1.04	0.72	0.78	1.32	10096	797	4	175	0	0	0	logfile
✔	7WB5	32395	2024-06-24	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	21.95	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.82	0.0	0.05	16.90	0.01	2.203	18.93	6.86	9.2	90.8	0.0	-3.54	1.63	0.62	0.78	1.79	3256	408	4	0	3	0	0	logfile
✔	7WAY	32389	2024-06-27	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	19.59	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.54	0.0	0.03	20.06	0.00	2.234	5.35	0.48	2.1	97.9	0.0	1.88	0.32	0.88	0.88	2.32	11453	960	4	175	0	0	0	logfile
✔	7WB1	32392	2024-06-27	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	22.13	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.59	0.0	0.04	22.69	0.00	2.078	13.08	1.67	4.7	95.3	0.0	0.68	1.01	0.83	0.76	1.39	11524	960	4	178	0	0	0	logfile
✔	7WAZ	32390	2024-06-26	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	21.36	0.00	2.160	11.49	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.4	0.004	0.70	0.0	0.04	22.26	0.00	2.102	20.51	3.37	7.5	92.3	0.2	-0.22	1.39	0.70	0.64	0.72	11034	952	4	157	0	0	0	logfile
✔	7T6N	25720	2024-06-29	2021-12-14	2.9	3.20	—	3.2	0.007	1.08	4.0	0.06	13.71	0.01	2.335	3.95	0.19	3.2	96.8	0.0	-3.03	0.63	0.78	3.52	3.2	0.003	0.59	0.0	0.04	16.51	0.00	2.286	9.29	1.72	2.7	97.3	0.0	1.47	0.45	0.72	0.85	2.90	19412	2424	4	0	0	0	0	logfile
✔	7T74	25733	2024-06-30	2021-12-14	3.35	3.65	3.39	3.5	0.022	1.77	3.0	0.16	12.71	0.01	2.337	0.77	0.64	2.5	97.0	0.6	0.71	0.79	0.86	3.50	3.5	0.003	0.66	0.0	0.04	12.87	0.00	2.133	7.79	1.68	4.2	95.7	0.1	-0.19	1.23	0.79	0.86	2.74	21199	2552	41	0	98	0	0	logfile
✔	7T6R	25725	2024-06-29	2021-12-14	3.0	3.20	—	3.2	0.005	1.07	0.0	0.06	14.25	0.01	2.335	3.47	0.00	4.7	95.3	0.0	-3.26	0.68	0.84	3.26	3.2	0.003	0.59	0.0	0.04	16.52	0.00	2.194	8.81	0.91	4.0	96.0	0.0	0.93	0.43	0.70	0.88	2.24	19412	2424	4	0	0	0	0	logfile
✔	7QiA	13985	2024-06-24	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.6	0.003	0.61	0.0	0.04	14.66	0.00	2.202	12.04	2.19	7.4	92.6	0.0	-0.25	1.33	0.62	0.80	1.45	4843	639	4	0	0	3	0	logfile
✔	7QiG	13989	2024-06-24	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.004	0.66	0.0	0.05	17.63	0.00	2.136	6.56	3.19	9.5	90.5	0.0	-4.17	0.55	0.38	0.87	5.84	3213	396	3	0	0	0	0	logfile
✔	7T6T	25727	2024-06-25	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	13.63	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.004	0.67	0.0	0.04	16.77	0.00	2.004	14.12	4.52	1.6	98.4	0.0	-0.05	0.67	0.66	0.81	2.60	7164	908	5	0	2	0	0	logfile
✔	7T6K	25717	2024-06-29	2021-12-14	3.0	3.29	—	3.3	0.005	1.05	1.0	0.06	14.25	0.01	2.313	3.34	0.05	3.3	96.7	0.0	-3.51	0.68	0.82	3.50	3.3	0.003	0.60	0.0	0.04	16.77	0.00	2.123	8.86	2.91	2.4	97.6	0.0	0.73	1.15	0.69	0.85	2.89	19412	2424	4	0	0	0	0	logfile
✔	7T6U	25728	2024-06-26	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.003	0.63	0.0	0.04	15.97	0.00	2.140	8.42	2.34	2.4	97.6	0.0	0.37	1.20	0.78	0.81	3.34	9033	1152	6	0	2	0	0	logfile
✔	7T6J	25716	2024-06-29	2021-12-14	3.2	3.40	—	3.4	0.005	1.09	2.0	0.06	14.92	0.01	2.340	3.85	0.05	3.2	96.7	0.2	-3.33	0.70	0.87	2.58	3.4	0.002	0.57	0.0	0.04	16.52	0.00	2.183	7.47	1.29	2.6	97.4	0.0	1.52	0.93	0.72	0.90	2.08	19412	2424	4	0	0	0	0	logfile
✔	7T73	25732	2024-06-28	2021-12-14	4.0	4.27	3.95	4.3	0.021	1.92	14.0	0.14	13.61	0.02	1.521	2.44	1.56	3.5	95.7	0.8	-0.60	0.74	0.78	—	4.2	0.004	0.74	0.0	0.05	14.07	0.00	2.063	11.55	3.11	4.2	95.7	0.1	-0.93	0.88	0.76	0.80	—	16010	1907	28	0	78	0	0	logfile
✔	7T76	25735	2024-06-28	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.68	0.0	0.05	11.71	0.00	1.029	10.98	0.00	4.6	95.4	0.1	-0.42	1.87	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile

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