Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QiC	13987	2024-06-24	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.67	0.0	0.04	12.73	0.01	2.178	13.67	0.00	8.2	91.8	0.0	-0.19	1.37	0.65	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7T6K	25717	2024-06-29	2021-12-14	3.0	3.29	—	3.3	0.005	1.05	1.0	0.06	14.25	0.01	2.313	3.34	0.05	3.3	96.7	0.0	-3.51	0.68	0.82	3.50	3.3	0.003	0.60	0.0	0.04	16.77	0.00	2.123	8.86	2.91	2.4	97.6	0.0	0.73	1.15	0.69	0.85	2.89	19412	2424	4	0	0	0	0	logfile
✔	7T6V	25729	2024-06-26	2021-12-14	3.1	2.67	—	3.2	0.011	1.26	3.0	0.09	12.33	0.01	2.047	7.55	0.10	2.1	97.9	0.0	1.19	0.76	0.81	2.45	3.2	0.003	0.59	0.0	0.04	15.20	0.00	2.184	7.94	2.05	1.5	98.5	0.0	1.09	0.49	0.77	0.84	2.15	8949	1142	7	0	1	0	0	logfile
✔	7T6U	25728	2024-06-26	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.003	0.63	0.0	0.04	15.97	0.00	2.140	8.42	2.34	2.4	97.6	0.0	0.37	1.20	0.78	0.81	3.34	9033	1152	6	0	2	0	0	logfile
✔	7WAC	32381	2024-06-30	2021-12-14	2.91	3.68	2.90	3.4	0.002	0.51	0.0	0.04	13.36	0.00	2.221	5.30	0.00	2.9	97.1	0.0	0.53	0.85	0.87	3.21	3.3	0.006	0.58	0.0	0.05	14.91	0.00	2.215	7.35	0.81	3.5	96.5	0.0	0.86	0.37	0.83	0.88	3.50	22016	2892	4	0	0	0	0	logfile
✔	7T77	25736	2024-06-29	2021-12-14	4.75	4.98	4.61	4.8	0.022	1.83	4.0	0.15	13.67	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.70	0.0	0.04	11.98	0.01	2.127	13.26	0.00	5.2	94.8	0.0	-1.07	1.54	0.82	0.81	—	16832	1956	42	0	105	0	0	logfile
✔	7T76	25735	2024-06-28	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.68	0.0	0.05	11.71	0.00	1.029	10.98	0.00	4.6	95.4	0.1	-0.42	1.87	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	7T74	25733	2024-06-30	2021-12-14	3.35	3.65	3.39	3.5	0.022	1.77	3.0	0.16	12.71	0.01	2.337	0.77	0.64	2.5	97.0	0.6	0.71	0.79	0.86	3.50	3.5	0.003	0.66	0.0	0.04	12.87	0.00	2.133	7.79	1.68	4.2	95.7	0.1	-0.19	1.23	0.79	0.86	2.74	21199	2552	41	0	98	0	0	logfile
✔	7T6o	25721	2024-06-29	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.8	0.003	0.52	0.0	0.04	16.25	0.00	2.175	6.29	1.43	1.1	98.9	0.0	1.65	0.89	0.69	0.88	3.35	19412	2424	4	0	0	0	0	logfile
✔	7T73	25732	2024-06-28	2021-12-14	4.0	4.27	3.95	4.3	0.021	1.92	14.0	0.14	13.61	0.02	1.521	2.44	1.56	3.5	95.7	0.8	-0.60	0.74	0.78	—	4.2	0.004	0.74	0.0	0.05	14.07	0.00	2.063	11.55	3.11	4.2	95.7	0.1	-0.93	0.88	0.76	0.80	—	16010	1907	28	0	78	0	0	logfile
✔	7T5Q	25707	2024-06-30	2021-12-13	3.4	2.43	3.36	2.1	0.005	0.86	0.0	0.05	13.79	0.01	1.984	2.02	0.08	5.4	94.6	0.0	-1.49	0.75	0.76	2.01	2.1	0.003	0.63	0.0	0.04	16.08	0.00	1.981	8.45	2.79	5.0	94.9	0.0	-0.67	0.95	0.77	0.77	1.60	21671	2703	13	0	6	0	0	logfile
✔	7T5P	25706	2024-06-27	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.61	0.0	0.04	18.04	0.00	1.948	15.97	2.58	4.7	95.3	0.0	1.62	0.41	0.77	0.74	0.45	13597	822	2	0	0	0	6866	logfile
✔	7QHH	13972	2024-06-27	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	13.09	0.01	2.546	3.81	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.010	0.77	0.0	0.05	14.13	0.00	2.172	11.85	3.02	2.0	98.0	0.0	0.69	1.30	0.65	0.73	2.85	13626	1982	12	0	14	0	0	logfile
✔	7T5o	25699	2024-06-30	2021-12-12	3.39	3.68	—	3.5	0.007	1.38	6.0	0.08	13.25	0.01	2.295	3.59	0.00	5.1	94.9	0.0	-2.90	0.56	0.47	0.35	3.6	0.004	0.78	0.0	0.05	15.76	0.00	2.066	15.90	2.49	7.8	92.2	0.0	-1.67	1.27	0.68	0.63	0.52	21263	2758	5	0	0	0	0	logfile
✔	7QHA	13968	2024-06-24	2021-12-11	2.97	4.06	3.00	3.8	0.003	0.59	0.0	0.04	12.23	0.00	2.268	6.68	0.00	2.7	97.3	0.0	1.85	0.69	0.86	2.37	3.7	0.004	0.74	0.0	0.04	15.51	0.00	2.104	9.00	2.28	2.8	97.2	0.0	2.07	0.93	0.69	0.86	2.04	5282	684	4	0	2	0	0	logfile
✔	7T54	25694	2024-06-25	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	12.14	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.76	0.0	0.04	11.83	0.00	2.157	21.30	0.00	9.5	90.2	0.3	-0.60	1.62	0.70	0.81	—	8552	1416	4	0	2	0	0	logfile
✔	7T56	25696	2024-06-27	2021-12-11	3.7	4.23	3.77	4.1	0.004	0.68	0.0	0.05	13.82	0.00	1.719	9.32	0.72	3.3	96.6	0.1	0.18	0.72	0.76	1.54	4.1	0.003	0.70	0.0	0.04	16.65	0.00	1.914	11.29	3.37	3.6	96.4	0.0	0.93	0.86	0.73	0.81	1.25	11460	1464	6	0	4	0	0	logfile
✔	7QHB	13969	2024-06-28	2021-12-11	3.5	3.17	3.39	3.4	0.018	1.05	2.0	0.07	17.10	0.01	2.144	12.72	0.55	9.1	90.9	0.0	-2.00	0.67	0.74	3.10	3.5	0.003	0.63	0.0	0.04	15.40	0.00	2.142	9.74	2.14	3.2	96.8	0.0	1.09	0.58	0.68	0.75	2.69	15052	1966	12	0	24	0	0	logfile
✔	7T57	25697	2024-06-27	2021-12-11	3.7	4.28	3.83	4.1	0.003	0.73	0.0	0.04	14.11	0.00	1.826	9.53	0.72	2.7	97.1	0.1	0.90	0.72	0.74	0.99	4.1	0.004	0.93	1.0	0.04	16.04	0.00	1.989	11.55	2.57	2.5	97.5	0.0	1.05	0.86	0.73	0.79	1.12	11460	1464	6	0	4	0	0	logfile
✔	7T55	25695	2024-06-27	2021-12-11	4.1	4.86	4.16	4.3	0.004	0.71	0.0	0.04	13.63	0.00	1.743	14.08	0.24	2.9	97.0	0.1	0.26	0.75	0.76	—	4.3	0.003	0.60	0.0	0.04	13.22	0.00	1.905	12.67	0.00	3.0	97.0	0.0	1.51	1.27	0.79	0.85	—	11460	1464	6	0	4	0	0	logfile

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