Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QHB	13969	2024-06-28	2021-12-11	3.5	3.17	3.39	3.4	0.018	1.05	2.0	0.07	17.10	0.01	2.144	12.72	0.55	9.1	90.9	0.0	-2.00	0.67	0.74	3.10	3.5	0.003	0.63	0.0	0.04	15.40	0.00	2.142	9.74	2.14	3.2	96.8	0.0	1.09	0.58	0.68	0.75	2.69	15052	1966	12	0	24	0	0	logfile
✔	7T4S	25687	2024-06-28	2021-12-10	3.1	2.40	—	2.7	0.004	0.64	0.0	0.04	13.12	0.01	2.204	7.59	0.00	3.1	96.9	0.0	-0.13	0.80	0.78	3.71	2.7	0.004	0.65	0.0	0.04	15.84	0.00	2.121	10.08	2.11	3.1	96.9	0.0	0.23	1.42	0.82	0.81	2.68	16404	2045	14	0	10	0	0	logfile
✔	7T4N	25681	2024-06-25	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.002	0.47	0.0	0.04	16.41	0.00	2.285	5.09	1.53	1.3	98.7	0.0	1.56	0.20	0.66	0.87	3.51	6476	803	2	0	0	0	0	logfile
✔	7T4Q	25685	2024-06-28	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.89	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.005	1.01	2.0	0.05	15.89	0.00	2.134	9.45	2.93	2.7	97.3	0.1	0.45	1.30	0.76	0.85	2.92	15473	1946	15	0	6	0	0	logfile
✔	7QH2	13960	2024-06-29	2021-12-10	2.43	3.08	—	2.8	0.008	1.01	0.0	0.06	16.28	0.01	1.674	6.99	2.88	3.3	96.4	0.2	-4.15	0.84	0.85	4.97	2.8	0.003	0.56	0.0	0.04	15.32	0.00	2.002	7.28	1.33	2.3	97.6	0.1	0.20	1.04	0.84	0.86	4.52	16808	2138	14	0	8	2	0	logfile
✔	7W9V	32373	2024-06-29	2021-12-10	3.95	4.17	—	4.0	0.006	0.86	0.0	0.05	25.02	0.01	2.021	8.63	0.44	2.0	98.0	0.0	-0.79	0.79	0.65	0.99	4.0	0.003	0.50	0.0	0.03	25.72	0.00	1.966	38.47	1.87	3.0	97.0	0.0	2.40	1.36	0.88	0.84	1.01	18546	1302	11	290	0	0	2136	logfile
✔	7T4K	25678	2024-06-25	2021-12-10	3.25	3.56	3.27	3.4	0.005	0.88	0.0	0.05	12.76	0.01	2.287	3.74	0.15	2.3	97.7	0.0	0.51	0.73	0.84	2.59	3.4	0.003	0.54	0.0	0.04	14.85	0.00	2.197	7.41	1.65	1.6	98.4	0.0	1.49	0.85	0.71	0.85	1.80	6180	782	2	0	0	0	0	logfile
✔	7T4L	25679	2024-06-25	2021-12-10	3.28	3.55	3.30	3.4	0.005	0.95	0.0	0.05	13.46	0.01	2.269	5.36	0.00	2.5	97.5	0.0	1.35	0.70	0.81	1.97	3.4	0.002	0.53	0.0	0.04	15.28	0.00	2.233	7.26	1.94	2.3	97.7	0.0	1.83	1.80	0.72	0.85	2.15	6062	755	2	0	0	0	0	logfile
✔	7T4F	25675	2024-06-25	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.25	0.00	2.219	4.05	1.92	0.7	99.3	0.0	0.30	0.28	0.34	0.80	4.45	7224	980	4	0	0	0	0	logfile
✔	7W9F	32366	2024-06-24	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.62	0.0	0.04	16.03	0.00	2.228	10.74	3.30	4.5	95.5	0.0	-1.02	0.51	0.74	0.73	2.18	4856	625	3	0	0	0	0	logfile
✔	7W9i	32367	2024-06-25	2021-12-09	3.4	3.65	—	3.7	0.005	0.72	0.0	0.05	14.90	0.01	2.289	3.91	0.00	4.8	95.2	0.0	-5.48	0.68	0.80	2.34	3.7	0.003	0.59	0.0	0.04	16.38	0.00	2.216	7.43	2.16	2.5	97.5	0.0	-1.09	1.19	0.66	0.81	2.18	6412	791	2	0	0	0	0	logfile
✔	7W8S	32358	2024-06-25	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.62	0.0	0.04	14.81	0.00	2.242	2.46	2.03	2.7	97.3	0.0	-1.01	0.97	0.68	0.83	3.35	6455	788	4	0	3	0	0	logfile
✔	7T3o	25666	2024-06-24	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.64	0.0	0.04	16.10	0.00	2.296	4.66	3.52	4.9	95.1	0.0	0.11	0.51	0.49	0.85	1.58	3410	452	1	0	0	0	0	logfile
✔	7T3R	25669	2024-06-29	2021-12-08	3.4	3.68	3.48	3.6	0.004	0.54	0.0	0.04	14.60	0.00	2.035	8.37	0.00	4.7	95.3	0.0	1.52	0.71	0.78	2.05	3.6	0.005	0.67	0.0	0.04	16.72	0.00	2.083	11.66	2.48	4.5	95.5	0.0	0.87	1.10	0.76	0.86	1.89	68780	8444	8	0	88	0	0	logfile
✔	7T3P	25667	2024-06-28	2021-12-08	3.2	3.52	3.32	3.5	0.004	0.54	0.0	0.04	14.83	0.00	2.019	8.33	0.00	4.1	95.9	0.0	1.75	0.67	0.70	2.04	3.5	0.003	0.61	0.0	0.04	16.22	0.00	2.116	10.99	2.02	3.2	96.8	0.0	1.30	1.82	0.70	0.77	2.07	66992	8188	8	0	88	0	0	logfile
✔	7T3T	25670	2024-06-29	2021-12-08	3.8	4.12	3.99	4.0	0.003	0.53	0.0	0.04	14.36	0.00	2.071	8.23	0.05	4.3	95.7	0.0	1.40	0.73	0.78	1.63	4.0	0.006	0.80	0.0	0.04	16.76	0.00	2.001	17.09	3.09	5.6	94.4	0.0	0.32	0.94	0.75	0.84	1.31	68516	8408	8	0	92	0	0	logfile
✔	7T3Q	25668	2024-06-28	2021-12-08	3.3	3.64	3.39	3.6	0.004	0.54	0.0	0.04	14.70	0.00	2.049	7.69	0.00	4.5	95.5	0.0	1.74	0.70	0.74	2.52	3.6	0.006	0.70	0.0	0.04	16.46	0.00	2.108	12.35	2.31	4.9	95.1	0.0	0.50	0.82	0.74	0.80	2.15	68124	8336	8	0	88	0	0	logfile
✔	7T3N	25665	2024-06-24	2021-12-08	3.0	3.31	—	3.3	0.012	0.82	0.0	0.06	14.51	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.3	0.003	0.63	0.0	0.04	14.68	0.01	2.285	7.19	1.45	2.7	97.3	0.0	-0.05	0.39	0.49	0.84	2.52	3512	452	1	0	2	0	0	logfile
✔	7T37	25650	2024-06-30	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.20	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.003	0.51	0.0	0.03	14.20	0.00	2.304	5.90	1.16	3.1	96.9	0.0	1.29	0.28	0.69	0.82	1.91	20176	2476	8	0	8	0	0	logfile
✔	7W88	32353	2024-06-25	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.004	0.75	0.0	0.04	17.76	0.01	2.152	18.24	8.10	18.5	81.5	0.0	-3.48	0.48	0.70	0.70	1.62	7138	896	1	0	0	0	0	logfile

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