Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T37	25650	2024-06-30	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.20	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.003	0.51	0.0	0.03	14.20	0.00	2.304	5.90	1.16	3.1	96.9	0.0	1.29	0.28	0.69	0.82	1.91	20176	2476	8	0	8	0	0	logfile
✔	7W8G	32355	2024-06-26	2021-12-07	2.52	2.20	—	2.5	0.004	0.77	0.0	0.05	14.00	0.01	2.042	5.41	0.04	2.3	97.7	0.0	-0.29	0.72	0.75	2.86	2.5	0.003	0.68	2.0	0.04	16.94	0.00	1.769	8.53	2.76	2.2	97.8	0.0	0.79	0.50	0.75	0.80	2.84	62460	7876	24	0	34	0	0	logfile
✔	7T38	25651	2024-06-29	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.54	0.0	0.04	15.64	0.00	2.259	6.50	1.55	3.7	96.3	0.0	1.63	1.56	0.70	0.82	1.30	19404	2432	4	0	0	0	0	logfile
✔	7W84	32351	2024-06-28	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.006	1.14	1.0	0.06	18.07	0.01	1.676	23.16	5.04	9.8	90.2	0.0	-1.80	0.53	0.80	0.79	1.44	7879	995	1	0	0	0	0	logfile
✔	7W7P	32346	2024-06-27	2021-12-06	3.67	3.88	—	4.0	0.003	0.68	0.0	0.04	14.56	0.01	2.183	13.63	0.00	3.8	96.2	0.0	0.05	0.66	0.65	0.79	4.0	0.003	0.72	0.0	0.04	17.15	0.00	2.012	17.19	3.15	5.2	94.8	0.0	-0.07	0.80	0.65	0.70	0.40	13176	1667	6	0	0	0	0	logfile
✔	7W7W	32350	2024-06-25	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.82	0.0	0.04	15.67	0.00	1.699	8.15	2.76	3.9	96.1	0.0	0.64	0.35	0.58	0.76	1.86	7870	1018	1	0	2	0	0	logfile
✔	7W7V	32349	2024-06-25	2021-12-06	3.0	2.82	3.01	3.0	0.003	0.56	0.0	0.04	13.32	0.00	2.010	8.84	0.00	2.5	97.5	0.0	0.63	0.59	0.73	1.18	3.0	0.002	0.51	0.0	0.04	16.28	0.00	1.948	7.31	2.55	3.0	97.0	0.0	0.21	0.53	0.61	0.76	1.41	7823	1012	1	0	2	0	0	logfile
✔	7QFW	13950	2024-06-25	2021-12-06	3.86	2.50	3.84	2.1	0.006	0.98	0.0	0.05	22.55	0.01	2.276	6.63	0.36	3.9	96.1	0.0	-4.68	0.71	0.67	1.40	2.1	0.004	0.70	0.0	0.04	22.83	0.00	2.172	15.49	1.43	4.3	95.7	0.0	-0.89	1.17	0.71	0.67	0.93	8765	917	4	64	0	0	0	logfile
✔	7T32	25648	2024-06-24	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.67	0.0	0.04	16.13	0.00	2.231	8.44	3.17	4.9	94.9	0.3	2.40	0.93	0.45	0.80	0.68	2861	375	1	0	1	0	0	logfile
✔	7W7T	32347	2024-06-25	2021-12-06	3.4	2.93	3.31	3.4	0.003	0.63	0.0	0.04	13.40	0.00	2.069	10.32	0.11	2.9	97.1	0.0	0.71	0.57	0.70	1.45	3.4	0.003	0.59	0.0	0.04	15.64	0.00	2.086	10.00	2.06	3.7	96.3	0.0	0.03	1.33	0.59	0.72	1.06	7903	1021	1	0	4	0	0	logfile
✔	7W7U	32348	2024-06-25	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.002	0.50	0.0	0.04	16.10	0.00	2.045	8.07	1.62	3.0	97.0	0.0	0.61	1.31	0.60	0.80	1.43	7833	1015	1	0	2	0	0	logfile
✔	7QFQ	13947	2024-06-26	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.002	0.50	0.0	0.04	14.91	0.00	2.191	7.22	2.02	5.0	95.0	0.0	-0.54	0.36	0.66	0.71	1.58	10659	1291	1	0	0	0	0	logfile
✔	7QFP	13946	2024-06-26	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.75	0.0	0.05	17.04	0.00	2.107	15.47	3.70	11.5	88.4	0.1	-2.94	0.77	0.85	0.76	0.45	9996	1233	1	0	0	0	0	logfile
✔	7W7E	32342	2024-06-25	2021-12-04	3.4	3.51	—	3.9	0.006	0.67	2.0	0.05	13.83	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.003	0.63	0.0	0.04	16.57	0.00	2.168	8.75	3.57	6.4	93.6	0.0	-0.73	0.98	0.68	0.83	1.64	8524	1090	5	0	1	0	0	logfile
✔	7T2H	25613	2024-06-25	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.53	0.0	0.04	14.19	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	3.4	0.003	0.58	0.0	0.04	15.58	0.00	2.161	10.49	2.49	2.9	97.1	0.0	-0.67	0.37	0.60	0.79	2.48	8677	1119	5	0	1	0	0	logfile
✔	7T2G	25612	2024-06-25	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.57	0.0	0.04	14.59	0.00	2.145	11.70	2.00	2.1	97.9	0.0	0.68	0.37	0.80	0.81	4.59	6922	898	4	0	3	8	0	logfile
✔	7QEW	13943	2024-06-26	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.65	0.0	0.04	14.44	0.00	2.182	5.36	1.88	2.9	97.1	0.0	2.83	1.34	0.79	0.92	3.43	9702	1128	18	0	30	234	0	logfile
✔	7QEU	13941	2024-06-24	2021-12-03	2.7	3.39	—	3.0	0.007	0.80	0.0	0.04	13.54	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.002	0.54	0.0	0.04	14.86	0.00	2.195	4.16	0.93	2.0	98.0	0.0	3.41	0.42	0.79	0.88	2.64	3002	359	6	0	6	7	0	logfile
✔	7QEV	13942	2024-06-24	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	16.15	0.00	2.144	6.70	1.17	2.4	97.6	0.0	2.12	1.66	0.79	0.86	2.48	3204	383	6	0	8	8	0	logfile
✔	7QES	13939	2024-06-24	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.59	0.0	0.04	15.37	0.00	2.169	4.06	1.52	3.1	96.9	0.0	2.58	1.22	0.78	0.87	2.82	3076	366	6	0	10	14	0	logfile

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