Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UBZ	42110	2024-06-25	2023-09-25	3.02	3.57	3.02	3.5	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.003	0.52	0.0	0.03	15.22	0.00	2.034	8.67	2.85	1.7	98.3	0.0	3.25	0.76	0.60	0.83	2.12	6674	415	2	0	4	26	3315	logfile
✔	8UC0	42111	2024-06-25	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.002	0.51	0.0	0.03	13.72	0.00	2.049	3.62	1.12	1.4	98.6	0.0	3.59	0.92	0.63	0.88	3.80	6861	422	2	0	3	102	3375	logfile
✔	8UC1	42112	2024-06-26	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.54	0.0	0.04	14.92	0.00	2.229	9.93	2.47	3.5	96.3	0.2	1.98	1.14	0.58	0.78	1.96	10310	1336	4	0	2	0	0	logfile
✔	8Wi9	37561	2024-06-24	2023-09-24	3.5	3.88	3.05	3.4	0.003	0.56	0.0	0.03	23.55	0.00	1.955	10.62	0.43	4.2	95.8	0.0	0.56	0.86	0.86	1.71	3.4	0.005	0.60	0.0	0.04	23.18	0.00	1.961	10.44	4.66	4.6	95.4	0.0	0.69	1.11	0.86	0.87	1.88	54459	2779	24	1515	0	0	0	logfile
✔	8UBR	42101	2024-06-26	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.52	0.0	0.04	17.87	0.00	2.022	3.76	2.17	1.8	98.2	0.0	2.10	0.81	0.61	0.84	2.71	9440	1156	2	0	9	4	0	logfile
✔	8WH8	37533	2024-06-28	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.003	0.63	0.0	0.03	25.68	0.00	2.203	9.33	1.33	4.3	95.7	0.1	0.96	0.98	0.84	0.84	0.76	14304	1149	12	250	1	0	0	logfile
✔	8UB3	42075	2024-06-30	2023-09-22	3.3	3.17	3.38	3.1	0.005	0.69	0.0	0.04	9.45	0.01	2.321	4.56	0.00	0.0	100.0	0.0	3.84	0.45	0.71	2.58	3.2	0.004	0.44	0.0	0.03	14.35	0.00	2.147	6.04	1.60	0.7	99.3	0.0	5.89	0.69	0.47	0.75	1.86	71260	4480	20	0	0	0	36780	logfile
✔	8WGW	37517	2024-06-25	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.59	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.57	0.0	0.04	16.79	0.00	2.177	8.49	3.73	4.3	95.7	0.0	0.04	0.32	0.62	0.78	2.80	6564	794	5	0	9	0	0	logfile
✔	8WHA	37537	2024-06-29	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.66	0.0	0.04	23.78	0.00	2.006	11.42	0.00	5.4	94.5	0.1	0.37	1.43	0.86	0.83	—	19084	1646	14	284	4	0	0	logfile
✔	8WH9	37535	2024-06-28	2023-09-22	3.31	3.58	3.37	3.4	0.009	1.19	0.0	0.07	25.84	0.01	2.216	13.31	1.08	7.4	91.7	0.9	-2.77	0.81	0.72	0.93	3.3	0.003	0.64	0.0	0.04	26.25	0.00	2.139	9.93	1.97	5.3	94.6	0.1	1.20	1.66	0.87	0.87	1.10	15328	1188	12	284	2	0	0	logfile
✔	8UBG	42088	2024-06-30	2023-09-22	3.5	3.37	3.70	3.4	0.005	0.74	0.0	0.03	13.10	0.01	2.252	1.64	0.00	0.4	99.6	0.0	-2.55	0.48	0.72	1.79	3.4	0.003	0.47	0.0	0.03	15.93	0.00	2.154	5.53	1.15	1.5	98.5	0.0	5.94	0.86	0.49	0.72	1.23	72500	4520	20	0	0	0	37600	logfile
✔	8WH5	37529	2024-06-28	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.003	0.64	0.0	0.03	25.76	0.00	2.226	9.42	2.13	4.2	95.6	0.2	1.41	1.01	0.87	0.84	1.13	14663	1156	11	266	0	0	0	logfile
✔	8WG7	37504	2024-06-25	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.005	0.67	0.0	0.04	16.10	0.00	2.200	9.87	3.13	3.8	96.2	0.0	1.53	0.44	0.66	0.78	2.35	8123	1030	5	0	0	0	0	logfile
✔	8UAF	42062	2024-06-26	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.67	3.0	0.04	16.88	0.00	1.711	6.85	1.96	5.6	94.4	0.0	-1.07	0.43	0.75	0.74	1.78	64015	8033	35	0	22	0	0	logfile
✔	8WG5	37503	2024-06-28	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.004	0.66	0.0	0.04	26.82	0.00	2.082	13.16	2.42	2.8	97.2	0.0	1.67	1.57	0.91	0.87	1.41	14965	1135	12	294	0	0	0	logfile
✔	8UAE	42061	2024-06-27	2023-09-20	3.25	2.38	3.36	2.1	0.004	0.54	0.0	0.13	15.78	0.00	1.383	2.81	0.01	4.4	95.6	0.0	-0.64	0.80	0.81	2.82	2.1	0.002	0.52	0.0	0.04	17.07	0.00	2.033	4.08	1.39	4.3	95.7	0.0	-0.33	1.21	0.79	0.80	2.49	64624	8033	35	0	22	0	0	logfile
✔	8WG8	37505	2024-06-25	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.65	0.0	0.04	15.84	0.00	2.099	8.09	2.36	3.8	96.2	0.0	0.89	0.50	0.63	0.80	2.72	8043	1037	6	0	0	0	0	logfile
✔	8QLo	18486	2024-06-25	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.005	0.69	0.0	0.04	16.79	0.00	2.110	12.10	2.80	3.4	96.6	0.0	0.34	0.88	0.77	0.81	2.88	7282	892	2	0	0	0	0	logfile
✔	8WFK	37494	2024-06-24	2023-09-19	3.22	3.53	3.37	3.6	0.004	0.62	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.58	0.0	0.04	16.66	0.00	2.177	4.49	2.17	5.5	94.5	0.0	-0.64	0.37	0.59	0.87	2.26	4371	546	2	0	4	0	0	logfile
✔	8WFL	37495	2024-06-24	2023-09-19	3.03	3.10	3.19	3.5	0.009	0.81	0.0	0.07	17.69	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.5	0.003	0.57	0.0	0.04	17.85	0.00	2.161	8.31	5.57	6.6	93.4	0.0	-0.17	0.28	0.53	0.79	2.14	4414	552	2	0	1	0	0	logfile

• ← previous
• Page 24 of 420
• next →