Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WFK	37494	2024-06-24	2023-09-19	3.22	3.53	3.37	3.6	0.004	0.62	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.58	0.0	0.04	16.66	0.00	2.177	4.49	2.17	5.5	94.5	0.0	-0.64	0.37	0.59	0.87	2.26	4371	546	2	0	4	0	0	logfile
✔	8WEJ	37477	2024-06-26	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.003	0.64	0.0	0.04	16.53	0.00	2.027	12.17	2.43	3.5	96.5	0.0	0.11	1.54	0.72	0.81	3.49	10659	1336	11	0	12	1	0	logfile
✔	8WE7	37473	2024-06-30	2023-09-17	3.2	3.60	3.49	3.6	0.004	0.75	1.0	0.04	18.92	0.01	2.198	12.87	0.74	9.9	89.1	1.0	-2.42	0.53	0.76	2.05	3.6	0.003	0.67	0.0	0.04	17.80	0.00	2.188	10.21	3.45	9.8	89.7	0.5	-1.64	0.41	0.57	0.80	1.80	21014	2583	11	0	20	0	0	logfile
✔	8U8F	42023	2024-06-27	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.54	0.0	0.04	16.14	0.00	2.058	10.40	2.15	3.3	96.7	0.0	0.77	0.44	0.59	0.73	1.43	13891	889	5	0	1	0	6925	logfile
✔	8U89	42018	2024-06-26	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.004	0.87	0.0	0.04	16.92	0.00	2.078	10.17	2.54	2.4	97.6	0.0	1.48	1.15	0.68	0.80	1.50	9928	1241	4	0	2	0	0	logfile
✔	8QKK	18464	2024-06-24	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.005	1.15	1.0	0.05	15.88	0.00	2.253	10.33	1.85	2.3	97.7	0.0	1.66	0.79	0.64	0.80	1.36	5581	730	1	0	0	0	0	logfile
✔	8QK3	18455	2024-06-25	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.006	0.76	0.0	0.04	14.56	0.00	2.049	17.02	3.18	4.9	95.1	0.0	-0.45	0.93	0.87	0.87	3.00	7535	955	5	0	0	0	0	logfile
✔	8WD6	37455	2024-06-25	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.004	0.65	0.0	0.04	17.54	0.00	2.100	6.18	3.35	4.1	95.9	0.0	1.22	1.19	0.57	0.79	1.64	7973	1025	2	0	0	0	0	logfile
✔	8QJX	18453	2024-06-25	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.003	0.62	0.0	0.04	15.00	0.00	2.066	8.57	2.47	3.8	96.2	0.0	-0.40	0.79	0.88	0.88	3.40	7868	997	5	0	0	0	0	logfile
✔	8QJY	18454	2024-06-25	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.004	0.73	0.0	0.04	15.63	0.00	2.092	15.25	3.66	3.4	96.6	0.0	-0.51	1.62	0.86	0.84	2.78	6287	798	4	0	0	0	0	logfile
✔	8WD8	37457	2024-06-27	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.004	0.56	0.0	0.04	20.03	0.00	1.920	5.31	2.89	2.7	97.3	0.0	0.69	0.94	0.70	0.89	3.33	13667	1500	9	64	7	0	0	logfile
✔	8WCP	37445	2024-06-24	2023-09-13	3.28	3.36	2.33	3.4	0.005	0.83	0.0	0.06	10.78	0.00	2.482	16.18	0.00	11.1	88.9	0.0	-5.74	0.39	0.86	4.76	3.4	0.003	0.55	0.0	0.05	13.30	0.00	2.612	3.35	2.67	5.6	94.4	0.0	-3.88	0.95	0.38	0.87	5.18	1536	168	9	0	57	0	0	logfile
✔	8WCR	37447	2024-06-28	2023-09-13	2.74	3.06	2.68	2.9	0.005	0.81	0.0	0.06	24.23	0.01	2.265	4.48	1.14	2.9	97.1	0.0	1.16	0.78	0.90	2.94	2.9	0.004	0.58	0.0	0.05	20.94	0.00	2.210	4.48	1.92	3.5	96.5	0.0	1.62	0.80	0.76	0.89	3.04	14615	1560	15	0	50	270	0	logfile
✔	8QJJ	18448	2024-06-25	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.003	0.60	0.0	0.05	15.79	0.00	2.195	6.55	2.02	4.6	95.4	0.0	-1.98	2.31	0.33	0.79	4.17	7032	450	6	0	0	0	3588	logfile
✔	8WCQ	37446	2024-06-28	2023-09-13	3.35	3.66	3.31	3.6	0.003	0.52	0.0	0.04	22.28	0.01	2.278	5.98	0.00	2.6	97.4	0.0	0.24	0.66	0.67	1.42	3.5	0.003	0.56	0.0	0.04	18.51	0.00	2.126	6.50	1.35	2.6	97.4	0.0	0.88	0.54	0.79	0.87	2.01	14130	1560	10	0	45	0	0	logfile
✔	8WCS	37448	2024-06-26	2023-09-13	3.1	3.46	3.33	3.5	0.004	0.77	0.0	0.05	21.59	0.01	2.148	4.70	0.74	8.6	91.4	0.0	-2.55	0.70	0.76	1.66	3.5	0.003	0.57	0.0	0.04	21.35	0.00	2.171	10.32	4.74	9.6	90.4	0.0	-0.18	0.32	0.67	0.78	1.60	10096	1044	3	66	1	0	0	logfile
✔	8WCN	37444	2024-06-25	2023-09-13	3.2	2.54	2.95	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.003	0.66	0.0	0.04	17.07	0.00	1.886	10.10	4.83	3.2	96.8	0.0	1.19	0.55	0.77	0.74	1.39	6086	757	4	0	6	0	0	logfile
✔	8U5H	41922	2024-06-27	2023-09-12	3.23	3.43	—	3.4	0.005	0.71	0.0	0.06	30.15	0.00	2.200	13.39	0.85	4.6	95.4	0.0	0.94	0.72	0.83	0.90	3.4	0.008	0.73	0.0	0.04	30.28	0.00	2.129	15.38	3.54	5.4	94.6	0.0	1.14	0.38	0.72	0.84	1.24	13436	903	13	314	0	0	0	logfile
✔	8U53	41911	2024-06-26	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.55	0.0	0.04	16.80	0.00	2.150	5.92	0.97	2.1	97.9	0.0	1.72	0.65	0.75	0.82	2.99	9562	1074	4	0	98	0	0	logfile
✔	8WC5	37431	2024-06-25	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	2.9	0.004	0.67	0.0	0.05	16.19	0.00	2.154	6.96	2.24	6.6	93.4	0.0	-1.02	1.29	0.62	0.72	2.09	8511	1111	6	0	1	0	0	logfile

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