Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WC8	37434	2024-06-25	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.53	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.004	0.61	0.0	0.04	15.65	0.00	2.092	10.95	2.87	2.8	97.2	0.0	0.71	0.37	0.59	0.82	3.49	8062	1101	6	0	1	0	0	logfile
✔	8WC7	37433	2024-06-25	2023-09-11	3.1	3.32	3.11	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.002	0.51	0.0	0.04	15.57	0.00	2.245	4.87	1.03	4.1	95.9	0.0	0.27	0.92	0.71	0.86	2.93	8532	1122	6	0	1	0	0	logfile
✔	8WC5	37431	2024-06-25	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	2.9	0.004	0.67	0.0	0.05	16.19	0.00	2.154	6.96	2.24	6.6	93.4	0.0	-1.02	1.29	0.62	0.72	2.09	8511	1111	6	0	1	0	0	logfile
✔	8WC3	37429	2024-06-25	2023-09-11	3.0	3.02	2.90	3.0	0.006	0.96	2.0	0.07	13.97	0.01	1.356	8.37	1.40	5.2	94.8	0.0	-1.08	0.66	0.73	2.72	3.1	0.003	0.62	0.0	0.04	15.88	0.00	2.212	6.29	3.03	4.5	95.5	0.0	0.16	0.97	0.67	0.83	2.41	8418	1119	6	0	1	0	0	logfile
✔	8WCE	37439	2024-06-26	2023-09-11	3.09	3.37	3.25	3.4	0.003	0.64	0.0	0.04	21.71	0.00	2.259	4.16	0.33	9.2	90.8	0.0	-0.41	0.75	0.83	2.64	3.4	0.003	0.61	0.0	0.04	21.52	0.00	2.178	5.58	3.09	8.5	91.5	0.0	0.48	0.89	0.71	0.88	2.44	10350	994	5	97	2	0	0	logfile
✔	8WCC	37438	2024-06-24	2023-09-11	3.04	2.88	1.90	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.3	0.003	0.66	0.0	0.04	16.60	0.01	2.251	6.37	4.31	2.7	97.3	0.0	1.95	1.15	0.81	0.77	1.90	2056	270	2	0	1	0	0	logfile
✔	8WC9	37435	2024-06-25	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.81	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.002	0.56	0.0	0.04	15.38	0.00	2.158	6.97	1.62	3.8	96.2	0.0	-0.09	0.42	0.62	0.83	2.68	8394	1107	6	0	1	0	0	logfile
✔	8Qi7	18436	2024-06-28	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.003	0.63	0.0	0.04	13.55	0.00	2.302	2.80	0.92	3.7	96.3	0.0	-0.09	0.35	0.70	0.88	4.38	14609	1848	8	0	0	117	0	logfile
✔	8U4V	41899	2024-06-25	2023-09-11	2.99	3.26	2.62	3.1	0.006	1.12	2.0	0.06	16.56	0.00	2.063	13.44	0.83	3.4	96.6	0.0	0.66	0.71	0.79	3.57	3.1	0.003	0.88	0.0	0.04	16.53	0.00	2.188	7.29	3.19	2.6	97.4	0.0	1.27	1.59	0.83	0.91	3.49	6637	862	8	0	1	3	0	logfile
✔	8WCB	37437	2024-06-25	2023-09-11	3.1	3.38	3.17	3.4	0.019	1.20	4.0	0.07	12.91	0.01	2.246	9.90	1.09	3.2	96.8	0.0	-0.88	0.59	0.67	3.20	3.4	0.004	0.61	0.0	0.04	14.38	0.00	2.083	13.74	2.59	3.8	96.2	0.0	-0.09	1.04	0.55	0.71	2.75	7784	1072	6	0	1	0	0	logfile
✔	8WC4	37430	2024-06-25	2023-09-11	3.1	3.34	3.05	3.3	0.006	0.81	2.0	0.06	13.02	0.01	2.216	7.71	0.93	4.4	95.6	0.0	-0.26	0.69	0.85	3.75	3.3	0.002	0.53	0.0	0.04	14.80	0.00	2.186	5.14	1.86	2.9	97.1	0.0	0.74	0.93	0.72	0.88	2.95	8394	1110	6	0	1	0	0	logfile
✔	8WC6	37432	2024-06-26	2023-09-11	3.2	3.26	3.10	3.3	0.008	0.99	2.0	0.07	13.34	0.01	2.130	8.47	1.10	5.1	94.9	0.0	-0.22	0.72	0.84	3.41	3.3	0.004	0.58	0.0	0.04	14.94	0.00	2.248	4.46	1.21	4.8	95.2	0.0	0.20	0.96	0.72	0.87	2.97	9183	1241	7	0	1	0	0	logfile
✔	8WCA	37436	2024-06-25	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.004	0.61	0.0	0.04	15.00	0.00	2.072	8.64	2.67	4.1	95.9	0.0	0.17	0.36	0.68	0.79	1.22	8160	1110	6	0	1	0	0	logfile
✔	8U4P	41890	2024-06-26	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.53	0.0	0.04	14.37	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.002	0.44	0.0	0.04	15.28	0.00	2.236	4.03	1.75	3.1	96.9	0.0	1.12	0.22	0.55	0.82	2.71	7006	892	5	0	2	0	0	logfile
✔	8U4C	41878	2024-06-29	2023-09-10	3.6	4.15	3.69	3.7	0.003	0.61	0.0	0.04	17.06	0.00	1.722	13.82	0.00	6.8	93.0	0.2	-1.32	0.87	0.82	2.06	3.7	0.004	0.62	0.0	0.04	17.16	0.00	2.187	15.61	3.69	7.7	92.0	0.2	-1.54	1.15	0.88	0.84	1.86	14706	1826	6	0	0	0	0	logfile
✔	8U4i	41883	2024-06-30	2023-09-10	3.38	3.92	3.46	3.8	0.014	1.56	0.0	0.09	16.96	0.01	2.351	0.62	0.35	2.0	98.0	0.0	-0.39	0.80	0.79	3.08	3.8	0.004	0.88	0.0	0.04	12.16	0.00	2.072	6.85	1.47	5.5	94.5	0.0	-1.43	1.22	0.75	0.75	2.77	20434	1301	20	0	57	0	9593	logfile
✔	8U4L	41886	2024-06-29	2023-09-10	3.31	3.91	3.35	3.7	0.013	1.52	2.0	0.09	15.71	0.01	2.364	1.08	0.09	2.0	98.0	0.0	-0.38	0.84	0.83	3.21	3.7	0.003	0.59	0.0	0.04	12.30	0.00	2.030	5.19	1.21	3.6	96.4	0.0	-0.57	1.21	0.81	0.83	3.29	19069	1230	15	0	35	0	9080	logfile
✔	8WBX	37426	2024-06-25	2023-09-10	3.23	3.53	3.23	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.61	0.0	0.04	16.34	0.00	2.228	11.56	5.16	2.7	97.3	0.0	1.44	0.55	0.50	0.66	1.19	7331	934	3	0	1	0	0	logfile
✔	8QHS	18416	2024-06-25	2023-09-10	2.3	2.47	2.33	2.4	0.006	0.68	0.0	0.05	17.61	0.00	2.089	5.84	6.56	1.3	98.7	0.0	-0.18	0.40	0.89	6.91	2.4	0.003	0.44	0.0	0.04	17.18	0.00	2.126	5.93	0.82	1.3	98.7	0.0	1.42	0.37	0.41	0.91	6.33	6212	785	10	0	0	337	0	logfile
✔	8U4K	41885	2024-06-29	2023-09-10	4.27	4.73	4.32	4.3	0.013	1.64	1.0	0.09	16.02	0.02	2.383	1.03	0.19	3.8	96.2	0.0	-0.65	0.87	0.72	—	4.4	0.004	0.72	0.0	0.04	11.84	0.00	1.961	14.50	0.19	8.3	91.7	0.0	-1.79	3.58	0.87	0.76	—	19063	1228	15	0	35	0	9074	logfile

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