Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U1S	41826	2024-06-29	2023-09-02	3.21	3.93	3.31	3.8	0.023	1.95	9.0	0.10	10.17	0.01	1.314	5.29	0.79	6.0	93.3	0.6	-0.28	0.73	0.76	2.59	3.8	0.005	0.97	1.0	0.05	15.29	0.00	2.165	16.77	4.00	6.5	93.2	0.3	-1.28	0.85	0.66	0.73	2.18	17465	2241	16	0	4	0	0	logfile
✔	8U1L	41816	2024-06-27	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	3.0	0.002	0.64	0.0	0.04	15.95	0.00	2.029	17.51	2.88	2.6	97.4	0.0	0.01	0.54	0.93	0.80	0.18	12595	1543	6	0	4	0	0	logfile
✔	8W89	37349	2024-06-25	2023-09-01	3.0	3.35	3.11	3.3	0.006	0.83	0.0	0.06	13.33	0.00	2.334	4.90	0.90	3.4	96.6	0.0	0.85	0.63	0.81	2.98	3.3	0.003	0.59	0.0	0.04	15.86	0.00	2.107	8.46	2.13	2.3	97.7	0.0	0.77	0.97	0.62	0.83	2.81	8230	1043	6	0	1	1	0	logfile
✔	8W8B	37351	2024-06-25	2023-09-01	3.0	3.35	3.12	3.3	0.005	0.58	0.0	0.04	14.50	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.003	0.55	0.0	0.04	15.15	0.00	2.091	5.71	1.40	2.6	97.4	0.0	1.70	0.30	0.63	0.86	3.21	8734	1096	6	0	7	0	0	logfile
✔	8U1R	41825	2024-06-26	2023-09-01	3.6	3.81	3.64	3.8	0.005	0.77	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.57	0.0	0.04	16.10	0.00	2.166	7.05	3.06	3.6	96.4	0.0	0.57	1.01	0.78	0.84	2.68	9126	1197	3	0	0	0	0	logfile
✔	8U1M	41817	2024-06-25	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.003	0.62	0.0	0.04	17.23	0.00	1.873	23.83	2.78	5.3	94.7	0.0	-1.59	0.45	0.93	0.75	0.73	7882	957	4	0	4	0	0	logfile
✔	8W88	37348	2024-06-25	2023-09-01	2.6	2.99	2.75	2.9	0.006	0.64	0.0	0.04	14.72	0.01	2.143	4.00	0.34	2.7	97.3	0.0	1.00	0.71	0.87	4.27	3.0	0.002	0.50	0.0	0.04	15.82	0.00	2.255	5.96	2.13	1.9	98.1	0.0	1.57	0.49	0.59	0.84	3.49	8307	1039	6	0	4	0	0	logfile
✔	8QEo	18374	2024-06-29	2023-09-01	3.26	2.53	3.32	3.1	0.004	0.53	0.0	0.04	11.10	0.00	2.018	6.28	2.65	8.6	91.3	0.1	-1.38	0.75	0.71	2.54	3.1	0.003	0.67	0.0	0.04	14.75	0.00	2.143	12.90	3.00	7.2	92.6	0.2	-0.92	0.75	0.78	0.76	1.94	18126	2267	3	0	1	0	0	logfile
✔	8QEN	18373	2024-06-29	2023-09-01	3.4	2.69	3.47	3.3	0.003	0.54	0.0	0.04	10.63	0.00	2.118	7.73	2.20	5.0	94.9	0.1	0.22	0.75	0.75	2.14	3.3	0.003	0.60	0.0	0.04	15.06	0.00	2.180	10.92	2.67	5.4	94.5	0.1	-0.02	2.69	0.77	0.80	1.82	19007	2363	2	0	1	0	0	logfile
✔	8U1N	41818	2024-06-25	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.004	0.66	0.0	0.04	18.37	0.00	1.855	21.65	4.80	5.7	94.3	0.0	-1.43	1.00	0.92	0.80	1.21	8164	994	4	0	4	0	0	logfile
✔	8W8A	37350	2024-06-25	2023-09-01	2.8	3.15	2.86	3.1	0.005	0.71	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.002	0.52	0.0	0.04	15.71	0.00	2.136	7.27	1.57	2.2	97.8	0.0	1.39	0.40	0.61	0.85	3.62	8260	1045	6	0	1	1	0	logfile
✔	8W87	37347	2024-06-25	2023-09-01	2.8	3.17	2.93	3.2	0.003	0.56	0.0	0.04	15.67	0.01	2.193	3.86	0.45	1.9	98.1	0.0	1.49	0.60	0.86	3.88	3.2	0.003	0.52	0.0	0.04	16.36	0.00	2.228	5.45	2.48	1.8	98.2	0.0	1.11	0.32	0.52	0.82	3.73	8228	1045	6	0	1	0	0	logfile
✔	8QEY	18379	2024-06-25	2023-09-01	4.0	4.20	4.03	4.1	0.005	0.96	0.0	0.05	19.80	0.01	2.258	7.47	0.91	6.8	93.2	0.0	-1.09	0.64	0.76	—	4.1	0.003	0.71	0.0	0.04	17.92	0.00	2.142	12.21	6.26	5.9	94.1	0.0	0.25	0.37	0.65	0.78	—	7306	918	7	0	9	0	0	logfile
✔	8U1Q	41824	2024-06-29	2023-09-01	3.36	3.66	3.33	3.6	0.021	1.93	4.0	0.11	10.36	0.01	2.182	1.42	0.00	4.1	95.0	0.8	-0.75	0.78	0.81	3.32	3.6	0.004	0.84	0.0	0.05	14.60	0.00	2.124	11.93	3.36	7.7	92.0	0.3	-2.09	0.69	0.78	0.83	2.15	19016	2448	16	0	8	0	0	logfile
✔	8U1o	41819	2024-06-28	2023-09-01	3.4	2.61	3.67	3.4	0.005	1.00	0.0	0.06	16.71	0.01	2.225	12.44	0.92	7.7	92.0	0.4	-2.51	0.56	0.72	1.67	3.4	0.003	0.76	0.0	0.05	17.19	0.00	2.092	21.87	4.78	8.0	91.7	0.3	-2.32	0.48	0.56	0.73	1.60	15096	1989	3	0	0	0	0	logfile
✔	8QEB	18350	2024-06-29	2023-08-31	3.3	3.60	3.37	3.6	0.003	0.49	0.0	0.04	17.62	0.00	2.137	5.26	0.41	4.3	95.7	0.0	-0.18	0.56	0.76	2.00	3.6	0.005	0.57	0.0	0.04	16.73	0.00	2.059	8.72	2.13	5.9	94.0	0.1	-0.37	0.35	0.64	0.80	2.00	17671	1098	5	0	9	1	8700	logfile
✔	8QEC	18351	2024-06-29	2023-08-31	3.3	3.50	3.30	3.5	0.004	0.63	0.0	0.08	18.85	0.00	2.107	4.26	0.10	4.0	95.9	0.1	0.19	0.64	0.80	2.63	3.5	0.004	0.57	0.0	0.04	15.71	0.00	1.989	5.76	1.32	4.3	95.5	0.2	0.83	0.34	0.62	0.80	2.70	17802	1101	6	0	12	0	8699	logfile
✔	8QEE	18353	2024-06-27	2023-08-31	2.43	2.62	2.45	2.7	0.002	0.45	0.0	0.04	17.85	0.00	2.021	4.01	2.15	1.7	98.3	0.0	2.41	0.61	0.81	4.25	2.7	0.003	0.52	0.0	0.04	17.01	0.00	1.985	5.79	2.55	1.7	98.2	0.1	2.17	0.69	0.62	0.81	3.68	13746	823	3	0	6	130	6889	logfile
✔	8U1C	41809	2024-06-29	2023-08-31	2.89	3.20	2.96	3.2	0.023	1.85	0.0	0.11	10.04	0.01	2.353	2.24	0.20	4.5	95.1	0.3	0.02	0.74	0.84	4.37	3.2	0.003	0.65	0.0	0.04	15.98	0.00	2.156	11.41	3.11	4.3	95.5	0.2	-0.73	0.77	0.69	0.88	4.66	18380	2348	16	0	8	0	0	logfile
✔	8QED	18352	2024-06-29	2023-08-31	3.27	3.56	3.31	3.6	0.004	0.50	0.0	0.04	15.81	0.00	1.902	4.27	0.10	4.7	95.1	0.2	0.44	0.64	0.81	2.28	3.6	0.003	0.49	0.0	0.04	15.80	0.00	1.917	6.44	1.32	4.9	95.0	0.1	0.77	0.27	0.65	0.82	2.04	17743	1101	6	0	11	0	8712	logfile

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