Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QEC	18351	2024-06-29	2023-08-31	3.3	3.50	3.30	3.5	0.004	0.63	0.0	0.08	18.85	0.00	2.107	4.26	0.10	4.0	95.9	0.1	0.19	0.64	0.80	2.63	3.5	0.004	0.57	0.0	0.04	15.71	0.00	1.989	5.76	1.32	4.3	95.5	0.2	0.83	0.34	0.62	0.80	2.70	17802	1101	6	0	12	0	8699	logfile
✔	8U14	41801	2024-06-30	2023-08-30	3.9	4.27	3.88	4.0	0.003	0.65	0.0	0.04	26.36	0.00	1.330	14.66	0.00	3.3	96.7	0.0	0.65	0.88	0.83	1.05	4.0	0.004	0.73	0.0	0.04	27.40	0.00	2.124	17.98	3.73	3.8	96.2	0.0	0.65	0.48	0.88	0.84	0.93	13995	1006	13	293	2	0	0	logfile
✔	8QE5	18343	2024-06-26	2023-08-30	2.6	2.68	2.59	2.6	0.004	0.60	0.0	0.04	17.25	0.01	2.197	7.21	2.85	3.3	96.7	0.0	1.17	0.79	0.87	3.48	2.6	0.004	0.60	0.0	0.04	17.41	0.00	2.163	7.53	3.53	2.9	97.1	0.0	1.46	0.21	0.78	0.88	3.69	10794	1340	1	0	0	0	0	logfile
✔	8U13	41800	2024-06-29	2023-08-30	3.8	4.21	3.57	3.9	0.004	0.64	0.0	0.04	27.10	0.00	1.330	13.20	0.00	2.5	97.5	0.0	0.79	0.88	0.84	1.36	3.9	0.004	0.73	0.0	0.04	27.59	0.00	2.158	14.58	3.30	3.9	96.1	0.0	0.34	0.50	0.88	0.85	1.14	12825	858	12	293	2	0	0	logfile
✔	8W77	37336	2024-06-24	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.003	0.55	0.0	0.04	11.02	0.01	2.401	2.51	2.22	1.6	98.4	0.0	3.79	0.88	0.58	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8W6i	37324	2024-06-25	2023-08-29	3.7	4.25	3.88	4.1	0.004	1.10	0.0	0.06	13.87	0.01	2.308	5.93	0.13	5.1	94.6	0.3	-3.33	0.69	0.78	0.81	4.1	0.004	0.82	1.0	0.05	15.92	0.01	2.172	17.35	2.89	5.1	94.7	0.2	-0.56	0.47	0.70	0.80	0.62	7750	1021	6	0	2	0	0	logfile
✔	8W6N	37329	2024-06-25	2023-08-29	3.2	3.38	3.23	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.004	0.72	0.0	0.04	15.08	0.01	2.183	7.62	3.23	5.7	94.3	0.0	-1.60	0.47	0.66	0.86	2.53	7616	975	4	0	3	0	0	logfile
✔	8W6J	37325	2024-06-25	2023-08-29	3.4	3.85	3.59	3.8	0.006	1.25	4.0	0.06	14.81	0.01	2.303	6.61	0.46	8.0	91.6	0.4	-2.91	0.69	0.77	1.54	3.8	0.003	0.73	0.0	0.04	16.49	0.00	2.153	13.93	3.82	6.8	92.7	0.4	-0.48	0.52	0.70	0.81	1.18	8553	1127	7	0	2	0	0	logfile
✔	8W6T	37332	2024-06-25	2023-08-29	3.0	3.16	2.98	3.2	0.006	1.03	1.0	0.07	12.77	0.01	2.247	4.01	0.72	6.3	93.6	0.1	-5.55	0.64	0.81	2.57	3.2	0.003	0.67	0.0	0.04	15.36	0.00	2.201	6.59	1.91	5.0	95.0	0.0	-0.32	2.25	0.62	0.81	2.80	7605	975	2	0	0	0	0	logfile
✔	8W6o	37330	2024-06-25	2023-08-29	2.9	3.07	2.91	3.1	0.005	1.04	0.0	0.05	13.10	0.01	2.246	2.60	0.13	6.6	93.0	0.5	-4.81	0.68	0.82	3.03	3.1	0.003	0.71	0.0	0.04	14.29	0.01	2.080	6.37	2.68	7.2	92.6	0.1	-0.33	0.45	0.69	0.83	2.35	7147	907	4	0	6	0	0	logfile
✔	8U0T	41784	2024-06-25	2023-08-29	3.2	3.49	3.24	3.5	0.013	1.40	2.0	0.09	10.78	0.01	2.291	1.69	0.47	2.7	97.1	0.1	-1.05	0.70	0.79	4.40	3.5	0.004	0.64	0.0	0.04	13.73	0.00	2.215	3.62	1.56	2.3	97.7	0.0	0.69	0.57	0.72	0.85	3.20	6761	849	4	0	10	0	0	logfile
✔	8TZZ	41775	2024-06-27	2023-08-28	3.56	3.88	3.65	3.7	0.007	0.86	0.0	0.05	18.89	0.00	1.432	7.04	0.66	4.4	95.6	0.0	-0.59	0.81	0.85	2.60	3.7	0.003	0.51	0.0	0.04	18.80	0.00	1.143	8.87	0.66	3.6	96.4	0.0	0.88	0.43	0.81	0.83	1.95	14012	1336	11	144	5	5	0	logfile
✔	8W6C	37320	2024-06-25	2023-08-28	2.7	2.82	2.69	2.8	0.007	1.05	0.0	0.05	14.78	0.01	2.163	5.79	1.13	4.8	95.2	0.0	-3.18	0.68	0.86	2.60	2.8	0.003	0.64	0.0	0.04	16.06	0.01	2.241	5.38	2.49	4.3	95.7	0.0	1.80	1.17	0.70	0.87	1.73	8360	1060	6	0	10	2	0	logfile
✔	8QCR	18333	2024-06-24	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.52	0.0	0.05	16.01	0.00	2.187	3.81	0.56	0.5	99.5	0.0	-0.39	1.40	0.39	0.87	7.24	3153	204	3	0	0	0	1608	logfile
✔	8QCS	18334	2024-06-24	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.60	0.0	0.04	16.17	0.00	2.163	6.69	1.70	2.9	97.1	0.0	2.24	1.20	0.54	0.80	2.68	3241	417	1	0	0	0	0	logfile
✔	8QD0	18339	2024-06-24	2023-08-28	2.8	3.36	2.79	3.2	0.003	0.63	0.0	0.04	15.30	0.01	2.337	5.83	0.00	1.0	99.0	0.0	1.25	0.61	0.81	3.08	3.2	0.003	0.64	0.0	0.04	15.98	0.01	2.173	10.01	2.83	1.2	98.8	0.0	1.92	1.73	0.51	0.75	3.02	3290	422	2	0	1	0	0	logfile
✔	8QCT	18335	2024-06-24	2023-08-28	2.6	2.36	2.57	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.004	0.56	0.0	0.04	16.03	0.00	2.131	8.00	1.69	2.4	97.6	0.0	1.75	0.37	0.68	0.84	3.45	3259	418	2	0	1	0	0	logfile
✔	8W6G	37322	2024-06-25	2023-08-28	3.3	3.59	3.21	3.6	0.008	1.06	2.0	0.06	13.36	0.01	2.313	3.18	0.00	7.3	92.7	0.0	-6.99	0.67	0.89	2.46	3.5	0.003	0.69	0.0	0.04	14.44	0.01	2.244	5.31	1.83	5.4	94.6	0.0	0.77	1.17	0.65	0.88	1.56	8314	1054	4	0	6	0	0	logfile
✔	8QCP	18331	2024-06-25	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.004	0.61	0.0	0.05	16.24	0.00	2.181	2.00	2.04	5.4	94.6	0.0	-2.13	0.96	0.35	0.86	5.39	7002	453	6	0	0	0	3567	logfile
✔	8W6D	37321	2024-06-25	2023-08-28	2.5	2.33	2.45	2.3	0.009	1.08	0.0	0.06	13.67	0.01	2.391	1.35	0.23	5.0	94.9	0.2	-2.77	0.67	0.86	3.20	2.3	0.003	0.62	0.0	0.04	15.41	0.01	2.342	4.36	1.03	4.2	95.8	0.0	1.73	1.15	0.67	0.86	2.90	8304	1058	4	0	6	0	0	logfile

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