Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KGo	37228	2024-06-27	2023-08-19	3.4	3.44	3.32	3.4	0.011	1.14	0.0	0.07	11.21	0.01	2.219	3.95	0.92	7.2	92.8	0.0	-4.07	0.72	0.85	3.37	3.4	0.002	0.53	0.0	0.04	15.26	0.00	2.136	5.93	1.91	3.2	96.8	0.0	-0.26	0.82	0.73	0.86	1.87	12141	1494	2	0	0	0	0	logfile
✔	8Q8Z	18266	2024-06-25	2023-08-19	3.16	3.15	3.34	3.2	0.011	1.88	0.0	0.08	10.80	0.01	2.522	0.00	0.00	4.6	95.4	0.0	-2.15	0.29	0.75	6.08	3.2	0.003	0.52	0.0	0.05	13.80	0.00	2.011	4.41	0.25	1.1	98.9	0.0	-1.26	2.96	0.33	0.85	5.45	7032	450	6	0	0	0	3588	logfile
✔	8Q96	18269	2024-06-24	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.004	0.67	0.0	0.05	14.93	0.00	2.120	3.99	3.00	5.6	94.4	0.0	-3.35	1.19	0.45	0.85	4.63	2100	224	12	0	88	0	0	logfile
✔	8KGP	37229	2024-06-27	2023-08-19	3.3	3.40	3.26	3.4	0.011	1.05	0.0	0.07	11.20	0.01	2.314	5.05	0.76	5.9	94.1	0.0	-3.96	0.75	0.88	3.52	3.4	0.002	0.57	0.0	0.04	15.48	0.00	2.151	4.85	2.06	4.0	96.0	0.0	-0.10	1.60	0.76	0.89	2.58	12168	1498	2	0	0	0	0	logfile
✔	8Q8X	18264	2024-06-24	2023-08-19	2.54	2.40	2.39	2.5	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.5	97.5	0.0	-1.63	0.27	0.77	6.72	2.4	0.005	0.65	0.0	0.05	16.11	0.00	2.244	3.57	1.53	2.3	97.7	0.0	-1.95	0.91	0.37	0.91	6.88	3435	453	6	0	0	0	0	logfile
✔	8Q8Y	18265	2024-06-25	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.53	0.0	0.05	17.29	0.00	2.053	2.18	1.55	1.9	98.1	0.0	-1.41	1.19	0.35	0.88	5.17	6896	441	6	0	0	0	3521	logfile
✔	8Q8W	18263	2024-06-25	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.47	0.0	0.05	15.76	0.00	2.331	0.91	0.54	0.7	99.3	0.0	-0.61	1.98	0.39	0.89	6.58	6618	429	6	0	0	0	3372	logfile
✔	8Q92	18268	2024-06-24	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.006	0.79	0.0	0.06	15.47	0.00	2.335	5.38	2.06	8.7	91.3	0.0	-2.87	0.27	0.32	0.84	3.70	2091	282	3	0	0	0	0	logfile
✔	8KGR	37231	2024-06-27	2023-08-19	3.2	3.30	3.21	3.2	0.008	0.95	0.0	0.06	15.37	0.01	1.983	3.98	0.07	4.6	95.4	0.0	-3.81	0.77	0.86	4.33	3.2	0.004	0.58	0.0	0.04	17.76	0.00	1.974	6.80	2.12	4.1	95.9	0.0	-0.02	0.85	0.78	0.88	3.07	13960	1558	6	65	2	0	0	logfile
✔	8KGL	37225	2024-06-25	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.003	0.60	0.0	0.04	11.24	0.00	2.116	13.55	0.00	4.6	95.4	0.0	0.26	0.91	0.81	0.76	—	8084	984	2	0	0	0	0	logfile
✔	8Q8E	18252	2024-06-25	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.003	0.80	0.0	0.05	15.19	0.01	2.133	12.17	6.15	6.8	93.2	0.0	-3.35	1.88	0.35	0.78	2.71	6810	894	12	0	0	0	0	logfile
✔	8Q8M	18255	2024-06-25	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.003	0.60	0.0	0.05	15.27	0.00	2.059	2.83	0.51	4.3	95.7	0.0	-1.60	1.09	0.41	0.87	5.85	7074	456	6	0	0	0	3606	logfile
✔	8TVW	41653	2024-06-26	2023-08-18	3.6	4.13	3.72	3.9	0.004	0.58	0.0	0.04	13.74	0.01	1.903	7.21	0.00	4.0	95.9	0.1	0.31	0.83	0.76	2.24	3.9	0.003	0.53	0.0	0.04	15.17	0.00	1.527	9.19	0.73	4.7	95.2	0.1	0.40	0.49	0.83	0.78	1.90	61431	3748	21	56	9	0	30468	logfile
✔	8TVG	41641	2024-06-25	2023-08-18	3.3	3.38	3.21	3.5	0.013	1.36	0.0	0.08	8.92	0.01	2.402	1.16	0.75	2.7	96.8	0.5	0.61	0.75	0.80	3.91	3.4	0.004	0.65	0.0	0.05	13.25	0.00	2.189	4.47	1.62	5.6	94.4	0.0	0.88	1.17	0.77	0.86	3.51	8310	1131	6	0	6	0	0	logfile
✔	8Q8V	18262	2024-06-25	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.004	1.27	0.0	0.05	14.36	0.01	2.145	14.66	1.01	6.6	93.4	0.0	-3.14	2.97	0.32	0.78	4.93	7032	450	6	0	0	0	3588	logfile
✔	8Q88	18249	2024-06-24	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.64	0.00	2.265	6.79	1.01	3.6	96.4	0.0	-2.41	1.31	0.39	0.87	5.37	3468	456	6	0	0	0	0	logfile
✔	8TVQ	41648	2024-06-25	2023-08-18	4.6	5.27	4.92	4.7	0.004	0.74	0.0	0.04	15.38	0.00	1.187	17.40	0.00	6.4	93.6	0.1	-1.44	0.84	0.74	—	4.7	0.003	0.57	0.0	0.04	15.73	0.00	1.113	19.71	0.00	8.0	92.0	0.1	-1.33	0.56	0.85	0.76	—	57710	3424	20	100	443	0	26856	logfile
✔	8KGE	37218	2024-06-24	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.005	0.73	0.0	0.05	17.29	0.00	2.165	13.09	10.36	10.8	89.0	0.2	-1.88	0.36	0.49	0.82	2.52	3584	486	2	0	0	0	0	logfile
✔	8TVH	41642	2024-06-25	2023-08-18	3.6	3.64	3.38	3.6	0.012	1.38	0.0	0.08	12.11	0.01	2.491	1.72	0.52	2.3	97.4	0.3	1.54	0.73	0.80	3.73	3.6	0.005	0.66	0.0	0.04	15.92	0.00	2.275	4.70	2.60	4.2	95.8	0.0	2.44	0.61	0.77	0.85	3.05	6744	939	12	0	3	0	0	logfile
✔	8Q8U	18261	2024-06-25	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.60	0.0	0.05	13.45	0.00	2.010	5.44	0.54	4.6	95.4	0.0	-2.14	1.35	0.45	0.77	2.83	6642	426	6	0	0	0	3396	logfile

• ← previous
• Page 34 of 420
• next →