Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q27	18070	2024-06-25	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.55	0.0	0.05	15.86	0.00	2.283	1.43	0.00	2.7	97.3	0.0	-1.21	0.87	0.34	0.88	7.45	7002	453	6	0	0	0	3567	logfile
✔	8K9K	36989	2024-06-26	2023-08-01	2.98	2.86	2.97	3.0	0.004	0.67	0.0	0.05	15.69	0.01	2.158	7.62	0.21	3.4	96.6	0.0	-0.21	0.63	0.85	3.93	3.0	0.003	0.57	0.0	0.04	15.92	0.00	2.232	7.01	1.86	2.3	97.7	0.0	1.32	0.91	0.64	0.84	3.28	8923	1142	6	0	2	0	0	logfile
✔	8K8U	36962	2024-06-27	2023-07-31	3.05	3.23	3.08	3.2	0.009	0.68	0.0	0.05	12.04	0.00	1.873	1.34	0.00	2.5	97.3	0.2	0.06	0.65	0.72	2.56	3.2	0.005	0.68	0.0	0.05	15.94	0.00	1.858	10.35	1.85	4.8	95.2	0.1	-0.27	1.78	0.72	0.79	2.51	13969	1640	6	27	4	2	0	logfile
✔	8K8T	36961	2024-06-26	2023-07-31	3.8	2.70	—	3.7	0.014	0.97	0.0	0.05	18.59	0.01	2.197	15.42	2.79	4.4	95.6	0.0	0.47	0.69	0.72	1.42	3.7	0.003	0.72	0.0	0.04	19.23	0.00	2.185	14.36	5.40	4.9	95.1	0.0	1.22	0.54	0.70	0.72	1.30	9926	1210	4	0	0	0	0	logfile
✔	8K98	36980	2024-06-27	2023-07-31	2.9	3.17	3.02	3.2	0.003	0.58	0.0	0.04	19.22	0.00	2.179	9.35	3.15	6.0	93.8	0.2	-0.15	0.63	0.75	1.48	3.2	0.004	0.63	0.0	0.04	19.42	0.00	2.180	11.47	3.29	7.0	93.0	0.1	-0.25	0.34	0.64	0.76	1.43	13415	1619	4	0	0	0	0	logfile
✔	8K8J	36951	2024-06-25	2023-07-30	2.88	3.12	—	3.1	0.004	0.58	0.0	0.04	15.12	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.003	0.55	0.0	0.04	16.92	0.00	2.002	8.48	2.93	4.5	95.5	0.0	0.56	0.33	0.65	0.85	3.55	8155	1031	6	0	1	0	0	logfile
✔	8TMA	41382	2024-06-24	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.002	0.58	0.0	0.04	14.87	0.00	2.170	5.37	1.69	3.5	96.5	0.0	0.11	1.71	0.80	0.83	3.04	3254	410	3	0	0	0	0	logfile
✔	8K8E	36948	2024-06-26	2023-07-29	2.6	3.29	2.56	3.0	0.005	0.68	0.0	0.05	16.42	0.00	2.218	8.92	1.33	5.7	94.3	0.0	0.45	0.69	0.87	2.88	3.0	0.004	0.62	0.0	0.04	15.08	0.00	2.041	7.06	2.39	5.4	94.6	0.0	0.87	0.38	0.70	0.88	3.14	10716	1324	10	0	17	0	0	logfile
✔	8Q0N	18056	2024-06-28	2023-07-28	4.2	4.02	3.99	4.1	0.002	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.003	0.59	0.0	0.04	14.26	0.00	1.972	11.36	0.00	4.0	96.0	0.0	0.13	1.04	0.69	0.65	—	15917	1009	4	0	2	0	7910	logfile
✔	8TLM	41370	2024-06-25	2023-07-27	2.9	3.41	2.91	3.3	0.003	0.49	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.003	0.60	0.0	0.04	15.24	0.00	2.298	6.10	2.63	2.6	97.4	0.0	1.12	1.03	0.71	0.83	3.39	5400	696	3	0	0	0	0	logfile
✔	8TLQ	41371	2024-06-29	2023-07-27	3.53	3.90	3.69	3.8	0.004	0.63	0.0	0.72	17.38	0.00	2.253	3.95	0.13	4.0	96.0	0.0	1.03	0.79	0.81	1.92	3.8	0.008	1.28	0.0	0.23	17.84	0.00	2.118	7.07	3.48	6.6	93.4	0.0	0.02	1.12	0.82	0.85	2.40	19219	2520	14	26	3	43	0	logfile
✔	8TLT	41372	2024-06-29	2023-07-27	2.85	3.16	2.98	3.1	0.005	0.67	0.0	0.74	17.33	0.00	2.216	4.11	0.54	4.6	95.4	0.0	0.75	0.70	0.81	3.25	3.1	0.008	1.28	0.0	0.24	17.63	0.00	2.158	5.35	2.16	5.4	94.6	0.0	0.08	1.10	0.74	0.85	3.49	18644	2387	16	26	3	437	0	logfile
✔	8TLU	41373	2024-06-26	2023-07-27	3.8	3.91	3.80	3.9	0.003	0.54	0.0	0.04	12.89	0.00	2.061	7.96	0.00	1.6	98.4	0.0	1.57	0.58	0.79	1.40	3.9	0.003	0.52	0.0	0.04	14.59	0.00	1.995	9.30	1.57	2.5	97.5	0.0	1.95	0.96	0.60	0.79	1.76	11180	698	2	0	0	0	5703	logfile
✔	8TM1	41374	2024-06-24	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.003	0.64	0.0	0.04	16.66	0.00	2.215	4.53	3.05	4.9	95.1	0.0	-0.66	1.18	0.79	0.86	3.93	4536	569	4	0	0	0	0	logfile
✔	8K7A	36936	2024-06-25	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.638	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.75	0.0	0.04	13.90	0.00	1.865	18.68	0.00	6.4	93.3	0.3	-0.10	1.03	0.71	0.81	—	8918	1126	4	0	4	0	0	logfile
✔	8K7C	36938	2024-06-26	2023-07-26	3.9	4.56	4.09	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.002	0.61	0.0	0.04	16.18	0.00	1.962	6.13	2.46	4.9	95.1	0.0	0.50	0.45	0.63	0.82	1.43	9271	1174	4	0	6	0	0	logfile
✔	8K77	36935	2024-06-25	2023-07-26	3.11	3.30	—	3.4	0.008	0.99	0.0	0.05	16.52	0.00	2.160	9.40	0.00	3.3	96.7	0.0	0.80	0.60	0.79	2.09	3.4	0.004	0.90	1.0	0.04	16.69	0.00	2.166	6.88	3.53	3.4	96.6	0.0	0.87	0.42	0.60	0.81	2.24	8192	1012	4	0	6	0	0	logfile
✔	8PS8	17846	2024-06-29	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.66	0.0	0.04	4.91	0.00	2.163	3.68	0.00	5.8	94.2	0.0	-0.68	0.68	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8K69	36919	2024-06-25	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.002	0.53	0.0	0.04	15.84	0.00	2.207	3.64	1.78	3.1	96.9	0.0	2.76	0.32	0.75	0.90	5.44	7744	916	6	0	18	126	0	logfile
✔	8K6K	36921	2024-06-25	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.003	1.07	0.0	0.06	17.34	0.00	1.814	8.13	1.02	3.3	96.7	0.0	1.05	0.19	0.76	0.90	4.46	8593	1088	5	0	6	0	0	logfile

• ← previous
• Page 40 of 420
• next →