Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K6K	36921	2024-06-25	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.003	1.07	0.0	0.06	17.34	0.00	1.814	8.13	1.02	3.3	96.7	0.0	1.05	0.19	0.76	0.90	4.46	8593	1088	5	0	6	0	0	logfile
✔	8K6J	36920	2024-06-25	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.003	1.03	0.0	0.06	17.27	0.00	1.789	8.08	2.15	4.1	95.9	0.0	0.99	0.23	0.77	0.88	3.66	8580	1087	5	0	6	0	0	logfile
✔	8K66	36918	2024-06-25	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.53	0.0	0.04	15.62	0.00	2.191	5.50	1.28	2.3	97.7	0.0	2.51	1.14	0.72	0.89	4.91	7620	886	6	0	16	130	0	logfile
✔	8TJU	41311	2024-06-26	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.70	0.0	0.04	24.91	0.01	1.784	28.62	0.00	0.0	0.0	0.0	—	0.32	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJV	41312	2024-06-26	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.53	0.01	1.086	12.37	0.00	0.0	0.0	0.0	—	0.88	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	8TJQ	41308	2024-06-26	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.008	0.76	0.0	0.04	24.61	0.01	1.817	25.57	0.00	0.0	0.0	0.0	—	0.19	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8TJX	41313	2024-06-25	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.61	0.0	0.04	24.05	0.01	1.838	11.47	0.00	0.0	0.0	0.0	—	0.81	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8K5B	36900	2024-06-24	2023-07-21	3.43	3.67	3.31	3.6	0.004	0.72	0.0	0.05	17.22	0.00	2.213	12.54	1.18	5.5	94.5	0.0	0.37	0.48	0.77	1.68	3.6	0.003	0.68	0.0	0.05	18.08	0.00	2.231	12.33	9.84	4.8	95.2	0.0	0.72	0.29	0.48	0.78	1.89	2374	291	2	0	1	0	0	logfile
✔	8K5G	36905	2024-06-24	2023-07-21	3.41	3.86	3.38	3.7	0.003	0.65	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.66	0.0	0.04	15.34	0.00	2.229	6.48	3.00	7.1	92.7	0.2	-1.49	1.45	0.64	0.86	2.61	3381	431	3	0	0	0	0	logfile
✔	8K5D	36902	2024-06-24	2023-07-21	3.74	3.93	3.66	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.003	0.63	0.0	0.04	19.70	0.00	2.141	10.06	6.48	6.2	93.8	0.0	0.57	0.23	0.52	0.79	1.68	2345	291	2	0	1	0	0	logfile
✔	8TJ3	41299	2024-06-27	2023-07-20	3.2	3.62	—	3.4	0.004	0.72	0.0	0.04	13.85	0.02	2.416	10.13	1.16	7.4	92.4	0.1	0.15	0.73	0.58	0.54	3.4	0.003	0.63	0.0	0.04	15.45	0.00	1.972	16.38	0.72	7.6	92.4	0.0	0.56	1.87	0.79	0.76	1.68	13127	833	2	0	0	0	6652	logfile
✔	8TJ2	41298	2024-06-24	2023-07-20	3.0	3.23	3.05	3.2	0.006	0.79	0.0	0.05	13.71	0.01	1.823	8.53	1.67	3.5	96.5	0.0	-1.17	0.63	0.84	3.97	3.2	0.004	0.66	0.0	0.04	14.64	0.00	1.864	6.86	2.24	5.4	94.6	0.0	-0.81	0.46	0.62	0.84	3.37	54252	3744	18	0	0	0	26460	logfile
✔	8K4U	36892	2024-06-25	2023-07-20	3.2	3.44	3.24	3.4	0.003	0.64	0.0	0.04	11.92	0.01	2.101	3.72	4.92	3.1	96.9	0.0	-4.11	0.71	0.78	3.40	3.4	0.003	0.66	0.0	0.04	15.07	0.00	2.124	10.36	4.49	3.2	96.8	0.0	-0.09	1.18	0.72	0.81	2.54	6323	778	3	0	1	0	0	logfile
✔	8PWH	17993	2024-06-27	2023-07-20	3.17	3.98	—	3.7	0.004	0.64	0.0	0.05	14.69	0.00	2.087	15.50	4.29	7.5	92.4	0.1	-1.53	0.84	0.76	2.00	3.7	0.005	0.69	0.0	0.05	14.24	0.00	2.117	15.85	3.74	8.0	91.9	0.1	-1.37	0.57	0.84	0.77	1.84	11535	1494	8	0	9	0	0	logfile
✔	8TiB	41283	2024-06-24	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.47	0.0	0.04	16.66	0.00	2.289	5.67	5.10	5.7	94.1	0.3	-0.88	0.28	0.32	0.87	1.53	2667	393	3	0	0	0	0	logfile
✔	8TiF	41286	2024-06-24	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.002	0.42	0.0	0.04	16.97	0.00	2.337	4.94	2.04	1.6	98.4	0.0	0.98	0.36	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8THU	41272	2024-06-27	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.56	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.003	0.56	0.0	0.03	28.34	0.00	2.226	8.63	1.78	2.3	97.7	0.0	2.76	0.27	0.93	0.90	1.90	11902	760	10	291	0	0	0	logfile
✔	8PVV	17973	2024-06-25	2023-07-18	2.81	3.06	2.84	3.0	0.004	0.63	0.0	0.05	18.01	0.01	1.707	10.54	0.33	2.6	97.4	0.0	0.55	0.79	0.81	3.73	3.0	0.004	0.58	0.0	0.04	18.86	0.00	1.887	14.08	2.31	2.1	97.9	0.0	0.84	1.60	0.80	0.82	3.10	6477	656	9	50	1	36	0	logfile
✔	8PVH	17966	2024-06-28	2023-07-17	2.9	2.53	2.93	3.0	0.010	1.69	0.0	0.08	15.36	0.01	2.437	0.56	1.49	2.0	97.8	0.2	-1.08	0.53	0.78	4.67	2.9	0.003	0.57	0.0	0.04	17.52	0.00	2.269	8.02	2.79	2.4	97.6	0.0	1.27	1.03	0.68	0.84	4.21	15172	1972	8	0	4	0	0	logfile
✔	8K44	36872	2024-06-25	2023-07-17	3.8	4.00	3.81	3.9	0.003	0.53	0.0	0.04	10.43	0.00	2.227	14.98	0.41	1.8	98.2	0.0	0.62	0.65	0.80	2.30	3.9	0.003	0.74	0.0	0.04	14.71	0.00	2.080	14.13	5.23	1.2	98.8	0.0	-0.01	0.65	0.65	0.80	1.97	6360	840	3	0	0	0	0	logfile

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