Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R3K	18871	2024-07-21	2023-11-09	3.43	3.17	3.32	3.3	0.003	0.54	0.0	0.04	18.62	0.00	1.888	7.20	0.00	2.4	97.6	0.0	1.23	0.77	0.86	2.39	3.3	0.004	0.68	0.0	0.04	18.90	0.00	1.926	8.23	2.86	2.8	97.2	0.0	1.19	0.93	0.77	0.86	2.18	14767	1717	7	41	3	0	0	logfile
✔	8R33	18859	2024-07-19	2023-11-08	2.29	2.45	2.30	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.004	0.59	0.0	0.04	17.67	0.00	2.120	8.21	1.26	2.0	98.0	0.0	2.36	0.62	0.66	0.86	4.90	8066	978	6	0	8	328	0	logfile
✔	8X1N	37997	2024-07-18	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.005	0.62	0.0	0.04	16.38	0.00	2.195	3.90	2.33	3.9	96.1	0.0	2.01	0.29	0.67	0.83	1.82	4763	591	3	0	8	0	0	logfile
✔	8R35	18861	2024-07-19	2023-11-08	3.12	3.46	3.18	3.4	0.003	0.55	0.0	0.04	16.59	0.00	2.214	6.87	0.90	2.4	97.6	0.0	1.44	0.68	0.87	1.80	3.4	0.003	0.58	0.0	0.04	16.76	0.00	2.246	6.87	3.35	2.6	97.4	0.0	2.27	0.28	0.67	0.87	1.74	7150	953	2	0	0	0	0	logfile
✔	8UX1	42685	2024-07-21	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.003	0.57	0.0	0.04	26.19	0.00	2.218	5.99	1.63	2.3	97.7	0.0	1.65	1.07	0.86	0.86	3.70	16395	1332	12	291	0	0	0	logfile
✔	8UWL	42676	2024-07-19	2023-11-06	2.8	2.30	—	2.9	0.013	1.69	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.59	0.0	0.04	16.26	0.00	2.039	3.35	2.74	2.5	97.5	0.0	1.56	1.05	0.83	0.85	3.55	8626	1123	6	0	1	0	0	logfile
✔	8X16	37985	2024-07-19	2023-11-06	3.29	3.58	3.36	3.7	0.005	0.53	0.0	0.04	8.10	0.00	2.203	8.34	0.32	2.0	97.9	0.1	-1.18	0.56	0.60	1.26	3.6	0.003	0.66	0.0	0.04	14.72	0.00	2.022	12.37	2.67	3.5	96.5	0.0	0.58	1.18	0.63	0.78	1.66	8751	1126	6	0	1	0	0	logfile
✔	8R2H	18842	2024-07-20	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.003	0.58	0.0	0.04	14.00	0.00	1.931	11.81	1.96	2.1	97.9	0.0	0.09	0.37	0.75	0.72	3.17	11484	1394	4	0	4	0	0	logfile
✔	8UVU	42629	2024-07-20	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.004	0.63	0.0	0.04	16.28	0.00	2.215	9.10	2.65	5.6	94.4	0.0	2.23	0.25	0.64	0.82	3.10	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2024-07-20	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.003	0.52	0.0	0.04	17.33	0.00	2.233	8.79	2.07	3.9	96.1	0.0	3.47	0.35	0.63	0.82	1.80	12104	1544	4	0	0	0	0	logfile
✔	8UV3	42604	2024-07-20	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.05	0.01	1.919	4.48	2.36	5.6	94.4	0.0	-1.63	0.35	0.37	0.76	3.31	12069	1534	9	0	3	276	0	logfile
✔	8X01	37964	2024-07-21	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.003	0.70	0.0	0.04	16.48	0.00	2.164	11.24	3.06	2.1	97.9	0.0	1.28	0.67	0.68	0.83	2.75	12742	1608	6	0	2	0	0	logfile
✔	8WZX	37963	2024-07-19	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.004	0.73	0.0	0.04	15.13	0.00	2.387	8.06	1.71	3.5	96.5	0.0	-4.16	0.93	0.53	0.89	5.59	7300	1020	20	0	0	0	0	logfile
✔	8UUZ	42602	2024-07-18	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.003	0.91	0.0	0.05	16.74	0.01	2.249	38.64	6.52	8.0	92.0	0.0	-1.98	1.31	0.75	0.58	0.64	2258	300	2	0	0	0	0	logfile
✔	8UUL	42589	2024-07-24	2023-11-01	3.2	4.04	3.32	3.7	0.009	1.04	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.003	0.57	0.0	0.04	14.06	0.00	2.158	6.34	0.81	3.9	96.1	0.0	-0.28	0.34	0.85	0.84	2.21	25891	3254	13	0	33	0	0	logfile
✔	8WZ2	37944	2024-07-19	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.008	1.23	2.0	0.05	15.41	0.01	1.950	15.26	3.10	2.3	97.7	0.0	0.63	4.12	0.70	0.84	2.77	9355	1202	6	0	0	0	0	logfile
✔	8UUN	42591	2024-07-24	2023-11-01	3.8	4.47	3.85	3.9	0.009	1.07	0.0	0.06	14.54	0.01	2.262	4.45	0.00	4.9	95.1	0.0	-1.78	0.87	0.86	2.02	3.9	0.003	0.57	0.0	0.04	14.55	0.00	2.189	8.08	0.91	4.4	95.6	0.0	-0.50	0.97	0.87	0.85	1.62	25829	3254	11	0	29	0	0	logfile
✔	8R1C	18807	2024-07-25	2023-11-01	2.2	2.38	2.25	2.4	0.008	0.87	2.0	0.05	14.58	0.01	2.093	4.37	1.07	2.9	97.1	0.0	0.17	0.67	0.83	5.11	2.4	0.003	0.53	0.0	0.04	14.93	0.00	2.093	4.22	1.70	2.6	97.4	0.0	0.40	0.76	0.67	0.87	5.06	30426	3867	12	0	30	0	0	logfile
✔	8UUo	42592	2024-07-24	2023-11-01	3.9	4.75	4.09	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.005	0.66	0.0	0.04	14.90	0.00	2.092	14.64	1.63	6.0	94.0	0.0	-0.70	1.00	0.87	0.85	1.40	25465	3218	9	0	22	0	0	logfile
✔	8UUE	42580	2024-07-19	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.70	0.0	0.04	18.81	0.01	2.114	11.54	6.92	10.8	88.4	0.8	-1.79	0.94	0.79	0.80	1.34	8984	1150	4	0	0	0	0	logfile

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