Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UUE	42580	2024-07-19	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.70	0.0	0.04	18.81	0.01	2.114	11.54	6.92	10.8	88.4	0.8	-1.79	0.94	0.79	0.80	1.34	8984	1150	4	0	0	0	0	logfile
✔	8WZB	37949	2024-07-22	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.005	0.76	0.0	0.05	17.95	0.01	2.105	15.72	4.59	4.8	95.1	0.1	-0.72	1.02	0.81	0.81	2.24	17594	2181	11	0	0	0	0	logfile
✔	8R1C	18807	2024-07-25	2023-11-01	2.2	2.38	2.25	2.4	0.008	0.87	2.0	0.05	14.58	0.01	2.093	4.37	1.07	2.9	97.1	0.0	0.17	0.67	0.83	5.11	2.4	0.003	0.53	0.0	0.04	14.93	0.00	2.093	4.22	1.70	2.6	97.4	0.0	0.40	0.76	0.67	0.87	5.06	30426	3867	12	0	30	0	0	logfile
✔	8WZ2	37944	2024-07-19	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.008	1.23	2.0	0.05	15.41	0.01	1.950	15.26	3.10	2.3	97.7	0.0	0.63	4.12	0.70	0.84	2.77	9355	1202	6	0	0	0	0	logfile
✔	8UUo	42592	2024-07-24	2023-11-01	3.9	4.75	4.09	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.005	0.66	0.0	0.04	14.90	0.00	2.092	14.64	1.63	6.0	94.0	0.0	-0.70	1.00	0.87	0.85	1.40	25465	3218	9	0	22	0	0	logfile
✔	8UUK	42588	2024-07-20	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.59	0.0	0.04	16.14	0.00	2.155	10.69	2.10	4.8	95.0	0.2	1.53	0.36	0.59	0.83	3.31	10242	1226	4	0	30	0	0	logfile
✔	8R0E	18790	2024-07-26	2023-10-31	2.7	2.36	2.70	2.4	0.012	1.20	1.0	0.09	14.99	0.01	1.990	5.21	0.07	11.9	88.1	0.0	-4.61	0.68	0.78	3.53	2.4	0.004	0.71	0.0	0.05	17.47	0.00	2.230	4.40	2.19	8.7	91.3	0.0	-0.64	2.18	0.68	0.79	3.25	32056	4524	6	0	0	0	0	logfile
✔	8WYi	37929	2024-07-18	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.005	0.88	0.0	0.04	18.87	0.00	2.172	15.49	8.03	12.3	86.9	0.9	-0.47	1.22	0.62	0.78	1.17	4659	589	8	0	0	0	0	logfile
✔	8UTP	42545	2024-07-23	2023-10-31	3.2	2.45	3.19	3.3	0.005	0.85	1.0	0.05	18.53	0.01	1.930	4.23	0.94	4.2	95.4	0.4	-0.04	0.65	0.85	3.10	3.3	0.003	0.58	0.0	0.04	17.20	0.00	1.880	6.11	2.34	3.8	96.1	0.1	0.96	2.56	0.64	0.85	2.81	23792	2982	16	2	11	0	0	logfile
✔	8UTT	42549	2024-07-23	2023-10-31	3.1	2.46	3.19	3.3	0.007	0.96	0.0	0.06	19.18	0.01	1.190	6.78	1.60	5.3	94.3	0.4	-0.45	0.60	0.84	2.90	3.3	0.003	0.62	0.0	0.04	17.16	0.00	1.972	6.89	2.27	4.1	95.7	0.2	1.05	0.54	0.60	0.85	2.54	23744	2974	16	2	11	0	0	logfile
✔	8UTo	42544	2024-07-23	2023-10-31	3.2	2.44	3.17	3.3	0.005	0.81	0.0	0.05	18.60	0.01	1.940	3.67	0.59	3.8	95.9	0.3	-0.12	0.64	0.84	3.00	3.3	0.003	0.59	0.0	0.04	17.14	0.00	1.944	7.11	2.26	4.0	95.9	0.2	0.77	0.94	0.65	0.85	2.61	23792	2982	16	2	11	0	0	logfile
✔	8UTY	42553	2024-07-23	2023-10-31	3.3	2.75	3.27	3.5	0.006	0.88	0.0	0.05	18.43	0.01	1.941	5.20	1.45	4.4	94.8	0.8	-0.11	0.56	0.83	2.61	3.5	0.002	0.61	0.0	0.04	16.47	0.00	2.023	8.08	2.38	3.7	96.2	0.1	0.75	1.37	0.57	0.84	2.41	23765	2979	16	2	11	0	0	logfile
✔	8UTN	42543	2024-07-23	2023-10-31	3.1	2.25	3.07	2.2	0.006	0.89	2.0	0.05	18.88	0.01	1.920	5.11	1.64	3.7	95.5	0.8	-0.26	0.63	0.82	3.47	2.2	0.003	0.59	0.0	0.04	17.03	0.00	1.930	6.92	3.59	4.0	95.9	0.1	0.83	0.95	0.63	0.83	3.13	23784	2981	16	2	11	0	0	logfile
✔	8UT9	42534	2024-07-21	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.16	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.5	0.004	0.67	0.0	0.04	15.44	0.00	2.110	12.88	2.77	4.8	95.2	0.0	-0.75	0.48	0.68	0.80	2.26	12707	1450	17	0	249	0	0	logfile
✔	8UT8	42533	2024-07-21	2023-10-30	3.2	3.53	3.40	3.5	0.007	1.15	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.5	0.003	0.65	0.0	0.04	15.58	0.00	2.154	13.09	2.36	5.0	95.0	0.0	-0.49	0.55	0.68	0.78	2.36	12707	1450	17	0	249	0	0	logfile
✔	8UT6	42531	2024-07-21	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.95	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.003	0.63	0.0	0.05	15.07	0.00	2.158	9.60	1.80	3.8	96.2	0.0	-0.22	1.10	0.61	0.80	4.34	13046	1460	11	0	257	0	0	logfile
✔	8WYC	37923	2024-07-23	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.61	0.0	0.04	18.90	0.00	2.142	12.85	5.03	3.3	96.7	0.0	0.09	0.41	0.74	0.87	2.64	22385	2680	10	0	4	0	0	logfile
✔	8WYF	37926	2024-07-23	2023-10-30	2.85	3.14	2.98	3.1	0.004	0.55	0.0	0.04	18.78	0.00	1.949	35.35	3.37	2.2	97.8	0.0	1.33	0.71	0.84	3.20	3.1	0.003	0.56	0.0	0.04	18.22	0.00	2.156	11.21	2.56	1.7	98.3	0.0	1.10	0.92	0.71	0.84	2.87	21408	2553	9	0	4	0	0	logfile
✔	8WYE	37925	2024-07-23	2023-10-30	2.49	3.06	2.66	3.0	0.003	0.52	0.0	0.04	18.24	0.00	2.044	9.50	4.05	1.8	98.2	0.0	0.91	0.78	0.83	3.41	3.0	0.004	0.68	0.0	0.04	18.02	0.00	1.274	10.52	3.28	1.7	98.3	0.0	1.21	0.28	0.66	0.82	3.40	21232	2553	5	0	0	0	0	logfile
✔	8UT7	42532	2024-07-21	2023-10-30	2.7	2.95	2.77	2.9	0.006	1.10	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.004	0.60	0.0	0.04	14.14	0.00	2.180	6.65	1.33	2.7	97.3	0.0	0.12	0.82	0.68	0.86	4.78	13046	1460	11	0	257	0	0	logfile

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