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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8U5H | 41922 | 2024-07-21 | 2023-09-12 | 3.23 | 3.43 | — | 3.4 | 0.005 | 0.71 | 0.0 | 0.06 | 30.15 | 0.00 | 2.200 | 13.39 | 0.85 | 4.6 | 95.4 | 0.0 | 0.94 | 0.72 | 0.83 | 0.90 | 3.4 | 0.008 | 0.73 | 0.0 | 0.04 | 30.28 | 0.00 | 2.129 | 15.38 | 3.54 | 5.4 | 94.6 | 0.0 | 1.14 | 0.38 | 0.72 | 0.84 | 1.24 | 13436 | 903 | 13 | 314 | 0 | 0 | 0 | logfile |
✔ | 8U53 | 41911 | 2024-07-20 | 2023-09-12 | 2.6 | 2.33 | 2.54 | 2.9 | 0.024 | 1.71 | 0.0 | 0.10 | 15.25 | 0.01 | 2.498 | 0.88 | 0.00 | 1.1 | 98.9 | 0.0 | 0.71 | 0.78 | 0.81 | 4.12 | 2.9 | 0.002 | 0.54 | 0.0 | 0.04 | 17.12 | 0.00 | 2.179 | 5.92 | 0.86 | 1.5 | 98.5 | 0.0 | 1.25 | 0.63 | 0.75 | 0.82 | 3.46 | 9562 | 1074 | 6 | 0 | 98 | 0 | 0 | logfile |
✔ | 8WC3 | 37429 | 2024-07-19 | 2023-09-11 | 3.0 | 3.02 | 2.90 | 3.0 | 0.006 | 0.96 | 2.0 | 0.07 | 13.97 | 0.01 | 1.356 | 8.37 | 1.40 | 5.2 | 94.8 | 0.0 | -1.08 | 0.66 | 0.73 | 2.72 | 3.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.87 | 0.00 | 2.200 | 7.51 | 2.56 | 5.6 | 94.4 | 0.0 | 0.13 | 0.46 | 0.68 | 0.84 | 2.59 | 8418 | 1119 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WCE | 37439 | 2024-07-20 | 2023-09-11 | 3.09 | 3.37 | 3.25 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 21.71 | 0.00 | 2.259 | 4.16 | 0.33 | 9.2 | 90.8 | 0.0 | -0.41 | 0.75 | 0.83 | 2.64 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 21.52 | 0.00 | 2.178 | 5.58 | 3.09 | 8.5 | 91.5 | 0.0 | 0.48 | 0.89 | 0.71 | 0.88 | 2.44 | 10350 | 994 | 5 | 97 | 2 | 0 | 0 | logfile |
✔ | 8WCA | 37436 | 2024-07-19 | 2023-09-11 | 3.48 | 3.71 | 3.50 | 3.7 | 0.006 | 0.87 | 5.0 | 0.06 | 13.52 | 0.01 | 2.105 | 10.04 | 0.89 | 4.3 | 95.7 | 0.0 | -0.41 | 0.66 | 0.74 | 1.96 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.14 | 0.00 | 2.119 | 8.25 | 2.16 | 3.2 | 96.8 | 0.0 | 0.48 | 0.39 | 0.69 | 0.80 | 1.63 | 8160 | 1110 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WC6 | 37432 | 2024-07-19 | 2023-09-11 | 3.2 | 3.26 | 3.10 | 3.3 | 0.008 | 0.99 | 2.0 | 0.07 | 13.34 | 0.01 | 2.130 | 8.47 | 1.10 | 5.1 | 94.9 | 0.0 | -0.22 | 0.72 | 0.84 | 3.41 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 14.95 | 0.00 | 2.239 | 4.58 | 1.32 | 3.5 | 96.5 | 0.0 | 0.39 | 0.96 | 0.72 | 0.87 | 3.14 | 9183 | 1241 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8Qi7 | 18436 | 2024-07-21 | 2023-09-11 | 2.9 | 3.13 | 2.98 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 9.14 | 0.00 | 2.275 | 2.18 | 0.79 | 6.3 | 93.4 | 0.2 | -3.83 | 0.69 | 0.88 | 5.75 | 3.2 | 0.002 | 0.61 | 0.0 | 0.04 | 13.61 | 0.00 | 2.258 | 2.32 | 0.13 | 3.9 | 96.1 | 0.0 | 0.68 | 0.38 | 0.69 | 0.87 | 4.10 | 14609 | 1848 | 8 | 0 | 0 | 117 | 0 | logfile |
✔ | 8WCC | 37438 | 2024-07-18 | 2023-09-11 | 3.04 | 2.88 | 1.90 | 3.2 | 0.017 | 2.05 | 5.0 | 0.15 | 16.41 | 0.02 | 2.464 | 8.33 | 2.87 | 9.2 | 90.8 | 0.0 | -3.38 | 0.84 | 0.81 | 2.50 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.60 | 0.00 | 2.246 | 6.61 | 2.39 | 2.7 | 97.3 | 0.0 | 1.82 | 1.16 | 0.81 | 0.78 | 1.90 | 2056 | 270 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WC7 | 37433 | 2024-07-19 | 2023-09-11 | 3.1 | 3.32 | 3.11 | 3.3 | 0.004 | 0.60 | 1.0 | 0.04 | 13.83 | 0.00 | 2.237 | 4.93 | 0.80 | 4.5 | 95.5 | 0.0 | -0.58 | 0.67 | 0.83 | 3.30 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 15.82 | 0.00 | 2.251 | 4.93 | 0.92 | 4.0 | 96.0 | 0.0 | 0.28 | 0.93 | 0.70 | 0.86 | 3.17 | 8532 | 1122 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WCB | 37437 | 2024-07-19 | 2023-09-11 | 3.1 | 3.38 | 3.17 | 3.4 | 0.019 | 1.20 | 4.0 | 0.07 | 12.91 | 0.01 | 2.246 | 9.90 | 1.09 | 3.2 | 96.8 | 0.0 | -0.88 | 0.59 | 0.67 | 3.20 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 14.46 | 0.00 | 2.150 | 11.79 | 1.77 | 3.1 | 96.9 | 0.0 | 0.52 | 1.39 | 0.55 | 0.70 | 2.58 | 7784 | 1072 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WC5 | 37431 | 2024-07-19 | 2023-09-11 | 3.3 | 2.84 | 2.93 | 3.0 | 0.006 | 1.09 | 3.0 | 0.08 | 14.80 | 0.01 | 2.206 | 10.49 | 1.80 | 6.6 | 93.4 | 0.0 | -2.33 | 0.60 | 0.68 | 2.61 | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.11 | 0.00 | 2.165 | 6.60 | 1.80 | 5.7 | 94.3 | 0.0 | -0.96 | 0.95 | 0.62 | 0.72 | 1.94 | 8511 | 1111 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8U4P | 41890 | 2024-07-19 | 2023-09-11 | 3.15 | 3.53 | 3.25 | 3.5 | 0.004 | 0.53 | 0.0 | 0.04 | 14.37 | 0.00 | 2.240 | 4.24 | 0.00 | 3.3 | 96.7 | 0.0 | 0.52 | 0.63 | 0.84 | 3.05 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 15.17 | 0.00 | 2.236 | 4.46 | 2.29 | 3.2 | 96.8 | 0.0 | 1.33 | 0.24 | 0.57 | 0.84 | 2.74 | 7006 | 892 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8U4V | 41899 | 2024-07-19 | 2023-09-11 | 2.99 | 3.26 | 2.62 | 3.1 | 0.006 | 1.12 | 2.0 | 0.06 | 16.56 | 0.00 | 2.063 | 13.44 | 0.83 | 3.4 | 96.6 | 0.0 | 0.66 | 0.71 | 0.79 | 3.57 | 3.1 | 0.003 | 0.88 | 0.0 | 0.04 | 16.34 | 0.00 | 2.192 | 7.82 | 2.35 | 2.5 | 97.5 | 0.0 | 1.38 | 1.60 | 0.83 | 0.91 | 3.47 | 6637 | 862 | 8 | 0 | 1 | 3 | 0 | logfile |
✔ | 8U4B | 41877 | 2024-07-23 | 2023-09-10 | 3.9 | 4.27 | 3.89 | 4.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.02 | 0.00 | 2.146 | 10.97 | 0.07 | 7.0 | 92.9 | 0.1 | -0.95 | 0.87 | 0.82 | 2.05 | 4.0 | 0.002 | 0.60 | 0.0 | 0.04 | 16.27 | 0.00 | 2.173 | 10.59 | 1.75 | 6.4 | 93.5 | 0.1 | -0.75 | 0.32 | 0.88 | 0.84 | 1.92 | 13212 | 1634 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QHS | 18416 | 2024-07-19 | 2023-09-10 | 2.3 | 2.47 | 2.33 | 2.4 | 0.006 | 0.68 | 0.0 | 0.05 | 17.61 | 0.00 | 2.089 | 5.84 | 6.56 | 1.3 | 98.7 | 0.0 | -0.18 | 0.40 | 0.89 | 6.91 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 17.18 | 0.00 | 2.126 | 5.93 | 0.82 | 1.3 | 98.7 | 0.0 | 1.42 | 0.37 | 0.41 | 0.91 | 6.33 | 6212 | 785 | 10 | 0 | 0 | 337 | 0 | logfile |
✔ | 8U4C | 41878 | 2024-07-22 | 2023-09-10 | 3.6 | 4.15 | 3.69 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 17.06 | 0.00 | 1.722 | 13.82 | 0.00 | 6.8 | 93.0 | 0.2 | -1.32 | 0.87 | 0.82 | 2.06 | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 17.16 | 0.00 | 2.187 | 15.61 | 3.75 | 7.7 | 92.0 | 0.2 | -1.54 | 1.15 | 0.88 | 0.84 | 1.86 | 14706 | 1826 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U4E | 41880 | 2024-07-22 | 2023-09-10 | 4.2 | 4.74 | 4.27 | 3.9 | 0.003 | 0.65 | 0.0 | 0.05 | 13.41 | 0.00 | 1.274 | 21.10 | 0.00 | 9.6 | 90.3 | 0.2 | -1.68 | 0.87 | 0.83 | — | 4.0 | 0.009 | 0.93 | 0.0 | 0.05 | 13.85 | 0.01 | 2.044 | 36.31 | 0.06 | 12.5 | 87.3 | 0.2 | -2.15 | 0.41 | 0.87 | 0.84 | — | 13948 | 1729 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U4K | 41885 | 2024-07-22 | 2023-09-10 | 4.27 | 4.73 | 4.32 | 4.3 | 0.013 | 1.64 | 1.0 | 0.09 | 16.02 | 0.02 | 2.383 | 1.03 | 0.19 | 3.8 | 96.2 | 0.0 | -0.65 | 0.87 | 0.72 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.04 | 11.84 | 0.00 | 1.961 | 14.50 | 0.19 | 8.3 | 91.7 | 0.0 | -1.79 | 3.58 | 0.87 | 0.76 | — | 19063 | 1228 | 15 | 0 | 35 | 0 | 9074 | logfile |
✔ | 8U4J | 41884 | 2024-07-23 | 2023-09-10 | 3.7 | 4.14 | 3.77 | 4.0 | 0.014 | 1.54 | 3.0 | 0.09 | 16.95 | 0.01 | 2.219 | 0.90 | 0.17 | 2.3 | 97.7 | 0.0 | -0.45 | 0.82 | 0.79 | 2.05 | 4.0 | 0.004 | 0.63 | 0.0 | 0.04 | 12.37 | 0.00 | 1.961 | 7.65 | 1.39 | 5.2 | 94.8 | 0.0 | -1.22 | 1.49 | 0.82 | 0.78 | 2.42 | 20432 | 1297 | 20 | 0 | 58 | 0 | 9582 | logfile |
✔ | 8U4i | 41883 | 2024-07-23 | 2023-09-10 | 3.38 | 3.92 | 3.46 | 3.8 | 0.014 | 1.56 | 0.0 | 0.09 | 16.96 | 0.01 | 2.351 | 0.62 | 0.35 | 2.0 | 98.0 | 0.0 | -0.39 | 0.80 | 0.79 | 3.08 | 3.8 | 0.004 | 0.88 | 0.0 | 0.04 | 12.16 | 0.00 | 2.072 | 6.85 | 1.47 | 5.5 | 94.5 | 0.0 | -1.43 | 1.22 | 0.75 | 0.75 | 2.77 | 20434 | 1301 | 20 | 0 | 57 | 0 | 9593 | logfile |