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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8U4L | 41886 | 2024-07-22 | 2023-09-10 | 3.31 | 3.91 | 3.35 | 3.7 | 0.013 | 1.52 | 2.0 | 0.09 | 15.71 | 0.01 | 2.364 | 1.08 | 0.09 | 2.0 | 98.0 | 0.0 | -0.38 | 0.84 | 0.83 | 3.21 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 12.30 | 0.00 | 2.030 | 5.19 | 1.21 | 3.6 | 96.4 | 0.0 | -0.57 | 1.21 | 0.81 | 0.83 | 3.29 | 19069 | 1230 | 15 | 0 | 35 | 0 | 9080 | logfile |
✔ | 8QHS | 18416 | 2024-07-19 | 2023-09-10 | 2.3 | 2.47 | 2.33 | 2.4 | 0.006 | 0.68 | 0.0 | 0.05 | 17.61 | 0.00 | 2.089 | 5.84 | 6.56 | 1.3 | 98.7 | 0.0 | -0.18 | 0.40 | 0.89 | 6.91 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 17.18 | 0.00 | 2.126 | 5.93 | 0.82 | 1.3 | 98.7 | 0.0 | 1.42 | 0.37 | 0.41 | 0.91 | 6.33 | 6212 | 785 | 10 | 0 | 0 | 337 | 0 | logfile |
✔ | 8WBF | 37423 | 2024-07-20 | 2023-09-09 | 2.99 | 3.28 | 3.15 | 3.3 | 0.002 | 0.51 | 0.0 | 0.04 | 13.35 | 0.00 | 2.224 | 6.39 | 0.08 | 7.2 | 92.8 | 0.0 | -1.12 | 0.59 | 0.83 | 3.14 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 16.56 | 0.00 | 2.215 | 6.81 | 3.02 | 7.4 | 92.6 | 0.0 | -1.01 | 0.96 | 0.59 | 0.84 | 3.23 | 10914 | 1364 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WBD | 37421 | 2024-07-21 | 2023-09-09 | 2.9 | 3.17 | 3.02 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 13.55 | 0.00 | 2.195 | 5.10 | 0.23 | 5.4 | 94.6 | 0.0 | -1.64 | 0.63 | 0.85 | 3.35 | 3.2 | 0.005 | 0.79 | 1.0 | 0.04 | 16.70 | 0.00 | 2.019 | 5.69 | 2.40 | 6.0 | 94.0 | 0.0 | -1.38 | 0.42 | 0.64 | 0.87 | 3.29 | 16157 | 2040 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WBG | 37424 | 2024-07-20 | 2023-09-09 | 3.2 | 3.51 | 3.33 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 13.02 | 0.00 | 2.197 | 6.61 | 0.17 | 5.0 | 94.9 | 0.1 | -1.10 | 0.64 | 0.77 | 3.06 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 15.61 | 0.00 | 2.087 | 7.27 | 2.27 | 5.1 | 94.8 | 0.1 | -1.24 | 0.98 | 0.61 | 0.76 | 2.53 | 10854 | 1357 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WBC | 37420 | 2024-07-20 | 2023-09-09 | 3.03 | 3.32 | 3.19 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 12.97 | 0.00 | 2.129 | 5.70 | 0.26 | 5.0 | 94.9 | 0.1 | -1.39 | 0.64 | 0.85 | 3.17 | 3.3 | 0.004 | 0.53 | 0.0 | 0.04 | 15.60 | 0.00 | 2.051 | 6.18 | 1.22 | 4.8 | 95.2 | 0.0 | -1.05 | 0.91 | 0.64 | 0.86 | 2.73 | 10549 | 1339 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WBE | 37422 | 2024-07-21 | 2023-09-09 | 3.0 | 3.25 | 3.12 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 13.42 | 0.00 | 2.196 | 5.31 | 0.23 | 5.0 | 94.9 | 0.0 | -1.78 | 0.61 | 0.84 | 3.17 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 16.75 | 0.00 | 2.133 | 5.69 | 2.92 | 5.1 | 94.9 | 0.0 | -1.27 | 0.50 | 0.63 | 0.86 | 2.79 | 16094 | 2040 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WBH | 37425 | 2024-07-20 | 2023-09-09 | 3.2 | 3.43 | 3.24 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 11.71 | 0.00 | 2.203 | 6.68 | 0.00 | 6.0 | 93.8 | 0.2 | -1.76 | 0.73 | 0.83 | 2.55 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.49 | 0.00 | 2.203 | 8.36 | 3.44 | 7.0 | 92.8 | 0.2 | -1.56 | 1.12 | 0.75 | 0.85 | 2.53 | 10284 | 1293 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WBB | 37419 | 2024-07-19 | 2023-09-09 | 2.9 | 3.16 | 2.98 | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 19.18 | 0.00 | 2.213 | 8.88 | 0.51 | 5.6 | 94.3 | 0.1 | -1.79 | 0.66 | 0.87 | 2.29 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 19.36 | 0.00 | 2.187 | 5.70 | 2.87 | 6.3 | 93.7 | 0.0 | -1.08 | 0.34 | 0.66 | 0.88 | 2.39 | 5449 | 689 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WBA | 37418 | 2024-07-19 | 2023-09-09 | 3.1 | 3.27 | 3.07 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 16.65 | 0.00 | 2.289 | 9.38 | 0.32 | 1.6 | 98.4 | 0.0 | 1.56 | 0.62 | 0.79 | 2.30 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 16.90 | 0.00 | 2.177 | 9.66 | 4.38 | 2.4 | 97.6 | 0.0 | 1.68 | 0.25 | 0.62 | 0.81 | 2.12 | 8646 | 1106 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8QHP | 18415 | 2024-07-19 | 2023-09-08 | 2.8 | 3.49 | 2.82 | 3.3 | 0.002 | 0.38 | 0.0 | 0.04 | 11.64 | 0.00 | 2.176 | 6.09 | 0.00 | 1.0 | 99.0 | 0.0 | 1.77 | 0.76 | 0.86 | 4.14 | 3.3 | 0.002 | 0.46 | 0.0 | 0.04 | 14.74 | 0.00 | 2.182 | 7.06 | 0.98 | 1.2 | 98.8 | 0.0 | 2.54 | 0.85 | 0.74 | 0.84 | 3.33 | 6788 | 820 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8U3Y | 41867 | 2024-07-21 | 2023-09-08 | 3.1 | 3.43 | 3.22 | 3.4 | 0.006 | 0.72 | 0.0 | 0.04 | 18.58 | 0.00 | 1.963 | 6.85 | 0.25 | 3.5 | 96.5 | 0.0 | -0.24 | 0.79 | 0.87 | 4.03 | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 18.77 | 0.00 | 1.985 | 7.15 | 0.33 | 3.2 | 96.8 | 0.0 | 0.86 | 0.33 | 0.76 | 0.87 | 3.16 | 14012 | 1336 | 10 | 144 | 5 | 5 | 0 | logfile |
✔ | 8U3G | 41861 | 2024-07-18 | 2023-09-07 | 3.42 | 3.86 | 3.14 | 3.8 | 0.006 | 0.73 | 0.0 | 0.04 | 13.98 | 0.00 | 2.209 | 8.90 | 0.00 | 6.9 | 93.1 | 0.0 | -3.18 | 0.48 | 0.82 | 2.51 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 15.63 | 0.01 | 2.142 | 9.50 | 2.82 | 5.7 | 94.3 | 0.0 | 0.46 | 0.90 | 0.40 | 0.77 | 2.23 | 3359 | 429 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WAM | 37397 | 2024-07-19 | 2023-09-07 | 3.23 | 3.48 | 3.24 | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 17.90 | 0.00 | 2.211 | 5.64 | 0.11 | 1.7 | 98.3 | 0.0 | 1.70 | 0.60 | 0.77 | 1.11 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 17.86 | 0.00 | 2.010 | 6.10 | 3.21 | 3.0 | 97.0 | 0.0 | 1.04 | 0.42 | 0.59 | 0.78 | 1.41 | 8650 | 1102 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8U3B | 41856 | 2024-07-26 | 2023-09-07 | 3.23 | 3.78 | 3.32 | 3.6 | 0.011 | 0.96 | 0.0 | 0.05 | 16.99 | 0.01 | 1.992 | 10.95 | 0.00 | 5.3 | 94.5 | 0.1 | -0.98 | 0.86 | 0.89 | 2.37 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 17.97 | 0.00 | 1.993 | 7.97 | 0.94 | 5.0 | 95.0 | 0.0 | 0.37 | 1.31 | 0.85 | 0.89 | 1.95 | 33286 | 3858 | 12 | 140 | 4 | 0 | 0 | logfile |
✔ | 8U3E | 41859 | 2024-07-18 | 2023-09-07 | 3.19 | 3.64 | 3.08 | 3.6 | 0.009 | 0.69 | 0.0 | 0.05 | 13.04 | 0.00 | 2.280 | 5.97 | 0.00 | 6.4 | 93.6 | 0.0 | -3.53 | 0.54 | 0.83 | 4.61 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 14.61 | 0.01 | 2.200 | 5.22 | 2.27 | 3.8 | 96.2 | 0.0 | 1.15 | 0.40 | 0.51 | 0.85 | 3.28 | 3338 | 427 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WA5 | 37391 | 2024-07-22 | 2023-09-07 | 2.51 | 2.71 | 2.50 | 2.7 | 0.004 | 1.10 | 0.0 | 0.04 | 16.21 | 0.01 | 1.926 | 4.94 | 0.85 | 2.3 | 97.7 | 0.0 | 1.17 | 0.66 | 0.84 | 3.96 | 2.8 | 0.003 | 0.79 | 0.0 | 0.04 | 16.66 | 0.00 | 1.625 | 5.59 | 2.07 | 2.5 | 97.5 | 0.0 | 1.36 | 1.21 | 0.69 | 0.88 | 3.77 | 9929 | 1249 | 5 | 0 | 12 | 6 | 0 | logfile |
✔ | 8U3D | 41858 | 2024-07-18 | 2023-09-07 | 2.83 | 3.27 | 2.77 | 3.2 | 0.009 | 0.78 | 0.0 | 0.05 | 12.53 | 0.01 | 2.284 | 5.37 | 0.00 | 5.0 | 95.0 | 0.0 | -2.36 | 0.56 | 0.87 | 3.83 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 14.63 | 0.01 | 2.306 | 6.11 | 1.99 | 4.0 | 96.0 | 0.0 | 1.61 | 1.24 | 0.52 | 0.86 | 3.01 | 3338 | 427 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U3F | 41860 | 2024-07-18 | 2023-09-07 | 3.31 | 3.63 | 3.18 | 3.6 | 0.005 | 0.62 | 0.0 | 0.04 | 12.99 | 0.01 | 2.265 | 6.58 | 0.00 | 2.1 | 97.9 | 0.0 | -1.54 | 0.57 | 0.87 | 2.88 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 14.65 | 0.00 | 2.165 | 7.16 | 2.77 | 2.6 | 97.4 | 0.0 | 1.87 | 0.35 | 0.55 | 0.87 | 1.99 | 3410 | 437 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8W9Y | 37385 | 2024-07-21 | 2023-09-06 | 3.5 | 3.75 | 3.53 | 3.8 | 0.004 | 0.76 | 1.0 | 0.04 | 15.90 | 0.01 | 2.097 | 9.48 | 0.48 | 10.7 | 89.3 | 0.0 | -0.43 | 0.58 | 0.75 | 1.32 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.80 | 0.00 | 2.040 | 8.95 | 4.08 | 10.5 | 89.5 | 0.0 | 0.00 | 0.65 | 0.60 | 0.78 | 1.14 | 13152 | 1584 | 6 | 0 | 0 | 0 | 0 | logfile |