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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8KAE | 37008 | 2024-07-19 | 2023-08-03 | 3.18 | 3.46 | 3.28 | 3.5 | 0.013 | 1.06 | 0.0 | 0.06 | 13.54 | 0.01 | 2.147 | 7.23 | 0.00 | 7.2 | 92.8 | 0.0 | -1.16 | 0.61 | 0.81 | 3.21 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.41 | 0.00 | 2.209 | 6.10 | 2.75 | 4.0 | 96.0 | 0.0 | 1.07 | 1.17 | 0.62 | 0.82 | 1.91 | 8440 | 1105 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ToA | 41441 | 2024-07-24 | 2023-08-03 | 3.69 | 4.05 | 3.88 | 4.0 | 0.007 | 1.08 | 0.0 | 0.06 | 14.71 | 0.01 | 1.051 | 12.20 | 1.62 | 7.4 | 92.3 | 0.3 | -2.84 | 0.71 | 0.63 | 1.41 | 3.9 | 0.009 | 0.97 | 0.0 | 0.05 | 16.32 | 0.01 | 1.991 | 32.44 | 3.51 | 11.0 | 88.8 | 0.1 | -2.58 | 1.16 | 0.76 | 0.79 | 1.32 | 16570 | 2109 | 15 | 0 | 11 | 0 | 0 | logfile |
✔ | 8Q2K | 18111 | 2024-07-19 | 2023-08-02 | 2.88 | 2.65 | 2.79 | 2.8 | 0.011 | 1.80 | 0.0 | 0.07 | 10.49 | 0.01 | 2.538 | 0.43 | 0.00 | 4.1 | 95.9 | 0.0 | -1.81 | 0.28 | 0.75 | 5.37 | 2.8 | 0.003 | 0.51 | 0.0 | 0.05 | 17.02 | 0.00 | 2.146 | 0.85 | 0.51 | 0.0 | 100.0 | 0.0 | -1.78 | 3.23 | 0.38 | 0.85 | 4.69 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8Q2J | 18109 | 2024-07-18 | 2023-08-02 | 2.23 | 2.02 | 2.19 | 2.2 | 0.011 | 1.72 | 0.0 | 0.08 | 11.08 | 0.01 | 2.490 | 0.14 | 0.00 | 1.8 | 98.2 | 0.0 | -1.62 | 0.29 | 0.75 | 7.51 | 2.2 | 0.004 | 0.61 | 0.0 | 0.05 | 17.29 | 0.00 | 2.248 | 4.07 | 1.50 | 0.4 | 99.6 | 0.0 | -1.99 | 0.90 | 0.44 | 0.90 | 7.16 | 3507 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8KA8 | 37006 | 2024-07-19 | 2023-08-02 | 2.96 | 2.36 | 3.03 | 2.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.59 | 0.00 | 2.017 | 5.93 | 0.15 | 6.2 | 93.8 | 0.0 | -0.68 | 0.79 | 0.79 | 3.28 | 2.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.96 | 0.01 | 2.144 | 6.72 | 2.91 | 7.5 | 92.5 | 0.0 | -0.29 | 0.62 | 0.81 | 0.84 | 3.34 | 6481 | 790 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 8Q2L | 18112 | 2024-07-18 | 2023-08-02 | 2.2 | 2.31 | 2.29 | 2.3 | 0.013 | 2.22 | 2.0 | 0.22 | 14.08 | 0.01 | 2.506 | 1.04 | 0.00 | 1.9 | 98.1 | 0.0 | -2.11 | 0.40 | 0.87 | 5.99 | 2.3 | 0.005 | 0.66 | 0.0 | 0.05 | 19.41 | 0.00 | 2.466 | 3.42 | 2.38 | 1.4 | 98.6 | 0.0 | -1.82 | 1.25 | 0.41 | 0.93 | 7.18 | 3300 | 432 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TNL | 41422 | 2024-07-24 | 2023-08-02 | 3.62 | 3.85 | 3.61 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 14.39 | 0.01 | 2.215 | 5.48 | 0.06 | 5.1 | 94.9 | 0.0 | -1.98 | 0.70 | 0.71 | 2.16 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.13 | 0.00 | 2.163 | 11.11 | 2.57 | 5.3 | 94.7 | 0.0 | -1.05 | 0.94 | 0.72 | 0.84 | 2.21 | 16478 | 2112 | 12 | 0 | 7 | 0 | 0 | logfile |
✔ | 8TNY | 41429 | 2024-07-19 | 2023-08-02 | 3.55 | 3.95 | 3.71 | 3.9 | 0.006 | 0.86 | 0.0 | 0.05 | 17.95 | 0.00 | 2.118 | 12.14 | 5.02 | 5.3 | 94.6 | 0.2 | 0.96 | 0.61 | 0.81 | 1.85 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 17.38 | 0.00 | 2.006 | 8.45 | 5.64 | 3.8 | 96.2 | 0.0 | 1.78 | 1.05 | 0.64 | 0.83 | 1.42 | 8026 | 1090 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8TNX | 41428 | 2024-07-19 | 2023-08-02 | 3.03 | 3.42 | 3.12 | 3.4 | 0.007 | 0.90 | 0.0 | 0.06 | 16.34 | 0.02 | 2.278 | 7.41 | 4.12 | 2.8 | 96.8 | 0.4 | 0.06 | 0.59 | 0.80 | 2.75 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.87 | 0.00 | 2.174 | 5.43 | 2.62 | 1.9 | 98.1 | 0.0 | 1.85 | 0.94 | 0.57 | 0.81 | 3.17 | 8272 | 1152 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8TNG | 41415 | 2024-07-22 | 2023-08-01 | 3.58 | 4.91 | 3.71 | 4.2 | 0.005 | 0.82 | 0.0 | 0.06 | 18.19 | 0.00 | 2.093 | 8.47 | 0.60 | 10.8 | 88.8 | 0.4 | -2.42 | 0.83 | 0.76 | 2.05 | 4.2 | 0.004 | 0.81 | 0.0 | 0.05 | 16.07 | 0.00 | 2.077 | 13.96 | 3.23 | 10.6 | 89.0 | 0.4 | -2.07 | 0.72 | 0.87 | 0.84 | 1.93 | 17495 | 2101 | 35 | 0 | 76 | 0 | 0 | logfile |
✔ | 8Q27 | 18070 | 2024-07-19 | 2023-08-01 | 2.02 | 1.98 | 1.92 | 2.0 | 0.011 | 1.74 | 0.0 | 0.08 | 11.92 | 0.01 | 2.517 | 0.00 | 1.27 | 2.3 | 97.7 | 0.0 | -1.63 | 0.21 | 0.69 | 8.02 | 2.0 | 0.003 | 0.55 | 0.0 | 0.05 | 15.87 | 0.00 | 2.283 | 1.43 | 0.00 | 2.7 | 97.3 | 0.0 | -1.21 | 0.87 | 0.34 | 0.88 | 7.45 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 8TNH | 41416 | 2024-07-22 | 2023-08-01 | 3.32 | 4.67 | 3.47 | 4.0 | 0.005 | 0.77 | 0.0 | 0.06 | 18.14 | 0.00 | 2.191 | 6.17 | 0.48 | 9.1 | 90.7 | 0.2 | -1.36 | 0.85 | 0.80 | 2.47 | 4.1 | 0.003 | 0.76 | 0.0 | 0.05 | 16.11 | 0.00 | 2.141 | 9.91 | 3.81 | 8.2 | 91.7 | 0.1 | -1.05 | 1.73 | 0.87 | 0.85 | 2.52 | 17667 | 2113 | 35 | 0 | 76 | 0 | 0 | logfile |
✔ | 8TNi | 41417 | 2024-07-22 | 2023-08-01 | 3.61 | 4.53 | 3.73 | 3.9 | 0.005 | 0.88 | 0.0 | 0.05 | 18.76 | 0.01 | 2.151 | 13.17 | 0.54 | 9.9 | 89.7 | 0.4 | -1.94 | 0.83 | 0.73 | 2.00 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 16.42 | 0.00 | 2.129 | 14.77 | 3.50 | 9.6 | 90.1 | 0.4 | -1.65 | 1.03 | 0.88 | 0.86 | 2.02 | 19399 | 2356 | 31 | 0 | 72 | 0 | 0 | logfile |
✔ | 8K9G | 36986 | 2024-07-22 | 2023-08-01 | 3.49 | 4.85 | 3.52 | 3.8 | 0.005 | 0.85 | 0.0 | 0.06 | 21.18 | 0.01 | 2.201 | 10.24 | 0.25 | 6.5 | 93.5 | 0.0 | -1.99 | 0.77 | 0.60 | 0.80 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 20.90 | 0.00 | 2.122 | 17.16 | 2.22 | 5.0 | 95.0 | 0.0 | -0.60 | 0.65 | 0.92 | 0.81 | 0.79 | 16759 | 1811 | 8 | 90 | 0 | 0 | 0 | logfile |
✔ | 8K9i | 36987 | 2024-07-19 | 2023-08-01 | 4.2 | 2.69 | 4.05 | 3.8 | 0.018 | 1.41 | 0.0 | 0.10 | 15.71 | 0.01 | 2.377 | 21.05 | 5.67 | 6.7 | 93.3 | 0.0 | -1.38 | 0.61 | 0.54 | — | 2.2 | 0.004 | 0.69 | 0.0 | 0.04 | 14.38 | 0.00 | 2.143 | 17.06 | 0.00 | 3.6 | 96.4 | 0.0 | 1.00 | 1.29 | 0.65 | 0.60 | — | 7657 | 939 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TN9 | 41411 | 2024-07-20 | 2023-08-01 | 3.05 | 3.46 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.05 | 14.36 | 0.00 | 2.022 | 10.85 | 0.25 | 10.0 | 90.0 | 0.0 | -2.35 | 0.78 | 0.78 | 2.58 | 3.3 | 0.003 | 0.68 | 0.0 | 0.05 | 15.91 | 0.00 | 2.153 | 9.76 | 2.29 | 8.8 | 91.2 | 0.0 | -2.46 | 0.43 | 0.78 | 0.78 | 2.37 | 11145 | 1368 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8K8T | 36961 | 2024-07-20 | 2023-07-31 | 3.8 | 2.70 | — | 3.7 | 0.014 | 0.97 | 0.0 | 0.05 | 18.59 | 0.01 | 2.197 | 15.42 | 2.79 | 4.4 | 95.6 | 0.0 | 0.47 | 0.69 | 0.72 | 1.42 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 19.23 | 0.00 | 2.185 | 14.36 | 5.40 | 4.9 | 95.1 | 0.0 | 1.22 | 0.54 | 0.70 | 0.72 | 1.30 | 9926 | 1210 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K98 | 36980 | 2024-07-21 | 2023-07-31 | 2.9 | 3.17 | 3.02 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 19.22 | 0.00 | 2.179 | 9.35 | 3.15 | 6.0 | 93.8 | 0.2 | -0.15 | 0.63 | 0.75 | 1.48 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 19.42 | 0.00 | 2.180 | 11.47 | 3.29 | 7.0 | 93.0 | 0.1 | -0.25 | 0.34 | 0.64 | 0.76 | 1.43 | 13415 | 1619 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K9A | 36982 | 2024-07-26 | 2023-07-31 | 3.9 | 3.93 | 3.73 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 17.91 | 0.00 | 2.057 | 11.47 | 2.33 | 4.1 | 95.8 | 0.1 | 0.07 | 0.81 | 0.80 | 1.26 | 3.8 | 0.002 | 0.57 | 0.0 | 0.04 | 18.13 | 0.00 | 2.136 | 9.88 | 2.83 | 3.9 | 96.0 | 0.1 | 0.73 | 0.40 | 0.84 | 0.84 | 1.21 | 34035 | 4104 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K8U | 36962 | 2024-07-21 | 2023-07-31 | 3.05 | 3.23 | 3.08 | 3.2 | 0.009 | 0.68 | 0.0 | 0.05 | 12.04 | 0.00 | 1.873 | 1.34 | 0.00 | 2.5 | 97.3 | 0.2 | 0.06 | 0.65 | 0.72 | 2.56 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.90 | 0.00 | 1.925 | 9.48 | 1.85 | 4.4 | 95.5 | 0.1 | -0.27 | 1.42 | 0.72 | 0.79 | 2.42 | 13969 | 1640 | 6 | 27 | 4 | 2 | 0 | logfile |