Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YC0	39128	2024-07-18	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.004	0.77	0.0	0.04	13.82	0.00	2.189	14.18	0.00	8.8	91.2	0.0	-0.63	0.74	0.61	0.73	—	4635	583	9	0	1	0	0	logfile
✔	8W15	43715	2024-07-23	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.002	0.59	0.0	0.04	16.52	0.00	2.191	7.97	1.95	2.8	97.2	0.0	2.28	0.89	0.86	0.87	2.09	21207	2710	2	0	0	0	0	logfile
✔	8W12	43714	2024-07-25	2024-02-14	3.5	3.04	3.63	3.5	0.003	0.70	0.0	0.05	14.49	0.01	2.219	5.77	0.00	3.0	97.0	0.0	-0.33	0.84	0.82	1.93	3.3	0.004	0.74	0.0	0.04	16.53	0.00	2.109	10.78	3.26	3.8	96.2	0.0	0.29	0.50	0.85	0.83	1.85	29248	3628	6	0	0	0	0	logfile
✔	8YBE	39117	2024-07-18	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.004	0.63	0.0	0.04	16.54	0.00	2.202	12.22	2.01	2.4	97.6	0.0	1.42	0.30	0.67	0.83	5.63	3110	370	3	0	2	197	0	logfile
✔	8RZL	19608	2024-07-19	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	1.332	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.66	0.0	0.04	11.36	0.00	2.255	4.39	1.92	2.4	97.6	0.0	1.12	0.96	0.87	0.90	5.16	8895	915	35	0	155	0	0	logfile
✔	8VZN	43683	2024-07-18	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.003	0.60	0.0	0.04	15.68	0.00	2.246	6.53	1.60	2.2	97.8	0.0	1.72	0.96	0.61	0.87	3.57	4656	596	4	0	1	0	0	logfile
✔	8VZo	43684	2024-07-18	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.004	0.60	0.0	0.04	15.24	0.00	2.196	5.83	1.93	2.0	98.0	0.0	2.12	0.51	0.67	0.88	4.24	4796	615	4	0	1	0	0	logfile
✔	8VYG	43660	2024-07-18	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.002	0.62	0.0	0.04	15.46	0.00	2.184	6.25	2.39	2.9	97.1	0.0	0.30	1.46	0.54	0.77	2.47	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2024-07-19	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.003	0.60	0.0	0.04	12.36	0.00	2.253	3.38	2.12	3.1	96.9	0.0	0.96	0.53	0.67	0.87	5.21	5132	715	9	0	12	0	0	logfile
✔	8VYE	43658	2024-07-26	2024-02-08	2.7	2.90	2.87	2.9	0.009	1.31	0.0	0.08	8.86	0.01	2.401	0.76	0.00	2.5	97.5	0.0	0.78	0.73	0.78	4.26	2.9	0.003	0.59	0.0	0.05	11.51	0.00	2.253	2.66	1.79	1.4	98.6	0.0	1.40	0.96	0.72	0.80	3.74	31140	5178	24	0	57	0	0	logfile
✔	8VXY	43643	2024-07-20	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.005	0.70	0.0	0.05	18.33	0.00	2.095	19.61	0.94	6.2	93.8	0.0	-0.75	1.40	0.66	0.69	0.98	12324	1406	5	62	1	0	0	logfile
✔	8Y94	39069	2024-07-19	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.004	0.70	0.0	0.04	15.08	0.00	2.170	12.53	3.78	3.4	96.6	0.0	0.85	1.15	0.59	0.79	1.00	9032	1130	2	0	0	0	0	logfile
✔	8VXQ	43629	2024-07-26	2024-02-05	3.1	3.71	3.15	3.6	0.004	0.71	1.0	0.03	18.79	0.01	2.202	3.22	0.37	6.7	93.2	0.0	1.68	0.65	0.78	1.03	3.6	0.003	0.58	0.0	0.03	19.12	0.00	2.172	7.00	3.48	6.6	93.2	0.2	2.44	0.37	0.63	0.78	1.02	31572	4158	18	0	0	0	0	logfile
✔	8Y7E	39013	2024-07-24	2024-02-04	4.66	8.34	13.59	40.0	0.023	1.39	0.0	0.09	15.11	0.01	2.073	10.06	3.83	3.1	96.9	0.0	-1.68	0.32	0.10	—	10.0	0.004	0.77	0.0	0.05	14.11	0.01	2.026	21.13	0.04	4.1	95.9	0.0	-0.38	2.18	0.41	0.30	—	26949	3426	19	80	4	0	0	logfile
✔	8VXC	43616	2024-07-20	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.003	0.63	0.0	0.04	17.35	0.00	2.163	13.66	1.79	3.7	96.3	0.0	0.29	0.60	0.75	0.73	1.52	9390	1139	3	22	0	0	0	logfile
✔	8VX9	43613	2024-07-20	2024-02-03	2.65	2.17	2.70	1.9	0.004	0.62	0.0	0.04	13.77	0.00	2.221	11.85	0.08	4.1	95.9	0.0	-0.43	0.74	0.70	2.71	2.0	0.005	0.71	0.0	0.05	16.57	0.01	2.175	16.26	1.51	4.8	95.2	0.0	-0.40	3.18	0.74	0.71	2.06	11244	1433	2	0	0	0	0	logfile
✔	8VXA	43615	2024-07-20	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.59	0.0	0.04	18.25	0.00	2.104	11.74	2.22	2.7	97.3	0.0	1.09	0.57	0.78	0.77	2.26	9431	1139	3	24	0	0	0	logfile
✔	8Y6U	39001	2024-07-26	2024-02-03	3.97	4.45	3.93	2.8	0.003	0.57	0.0	0.04	17.75	0.00	2.200	14.50	0.00	3.5	96.5	0.0	-1.04	0.88	0.84	1.01	2.8	0.003	0.61	0.0	0.04	18.81	0.00	2.123	14.84	0.83	4.1	95.9	0.0	-0.42	1.74	0.88	0.85	1.03	33869	3953	11	137	0	0	0	logfile
✔	8Y6P	38994	2024-07-20	2024-02-03	3.9	4.26	4.01	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.003	0.76	0.0	0.05	17.15	0.00	2.154	15.96	4.74	8.1	91.1	0.7	-1.04	2.24	0.82	0.79	1.23	9977	1228	1	0	0	0	0	logfile
✔	8VWP	43593	2024-07-21	2024-02-02	3.21	3.46	3.23	3.5	0.012	1.50	4.0	0.09	10.39	0.01	2.359	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.004	0.61	0.0	0.05	13.48	0.00	2.265	2.38	1.22	2.8	97.2	0.0	0.34	0.49	0.76	0.89	4.18	14820	2012	8	0	4	0	0	logfile

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