Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y66	38968	2024-07-18	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.60	0.0	0.04	16.42	0.00	2.131	8.60	4.17	2.8	97.2	0.0	1.91	0.35	0.46	0.69	1.26	3606	467	2	0	1	0	0	logfile
✔	8Y65	38966	2024-07-18	2024-02-01	3.51	3.77	3.42	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.003	0.60	0.0	0.04	15.18	0.00	2.222	10.41	1.60	3.4	96.6	0.0	1.93	0.35	0.44	0.57	0.74	3565	467	2	0	1	0	0	logfile
✔	8RV2	19522	2024-07-22	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.24	0.00	1.967	9.09	2.74	3.1	96.8	0.0	0.57	0.35	0.78	0.82	1.88	17248	2178	10	0	9	0	0	logfile
✔	8VV3	43548	2024-07-20	2024-01-30	2.61	2.94	2.71	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.004	0.62	0.0	0.04	16.90	0.00	2.192	11.99	4.81	4.7	95.3	0.0	2.57	1.16	0.59	0.75	2.16	12172	1548	8	0	4	0	0	logfile
✔	8VUZ	43545	2024-07-19	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.71	0.0	0.04	17.50	0.00	2.080	14.58	6.85	7.0	92.9	0.1	0.04	0.40	0.78	0.85	1.79	6626	869	4	0	0	0	0	logfile
✔	8VUW	43542	2024-07-21	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.55	0.0	0.04	16.59	0.00	2.155	9.66	1.15	4.1	95.9	0.0	-0.52	0.35	0.64	0.82	3.24	13055	1560	10	0	5	0	0	logfile
✔	8RTT	19496	2024-07-22	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.317	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.005	0.80	1.0	0.05	16.81	0.00	1.842	8.37	2.15	2.9	97.1	0.0	0.85	0.38	0.79	0.87	1.77	18155	2274	16	0	14	0	0	logfile
✔	8RU2	19503	2024-07-21	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.61	0.0	0.04	18.22	0.00	1.991	11.11	3.17	3.9	96.0	0.2	0.33	1.33	0.72	0.76	0.69	14773	1849	8	0	6	0	0	logfile
✔	8RU0	19501	2024-07-20	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.57	0.0	0.05	16.36	0.00	1.984	6.62	1.93	3.3	96.6	0.1	0.40	1.31	0.63	0.83	2.13	11660	1476	8	0	11	0	0	logfile
✔	8VUE	43529	2024-07-25	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.002	0.62	0.0	0.04	16.01	0.00	2.158	9.33	2.37	3.2	96.8	0.0	0.13	1.71	0.78	0.83	2.27	21501	2754	15	0	3	0	0	logfile
✔	8RT4	19478	2024-07-27	2024-01-25	2.46	3.75	2.46	3.2	0.008	0.67	0.0	0.05	12.45	0.00	2.224	5.56	0.00	2.3	97.7	0.0	0.59	0.81	0.89	4.39	3.2	0.006	0.77	0.0	0.04	14.50	0.00	2.175	10.31	1.43	1.8	98.2	0.0	0.82	0.73	0.78	0.89	3.46	38458	5054	42	0	0	0	0	logfile
✔	8RT9	19483	2024-07-22	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.67	0.0	0.04	16.61	0.00	2.183	11.60	2.21	1.9	98.1	0.0	3.05	0.72	0.71	0.88	2.63	17866	2395	10	0	0	0	0	logfile
✔	8RTD	19488	2024-07-27	2024-01-25	4.33	7.17	4.43	4.3	0.007	1.13	1.0	0.05	5.17	0.01	1.418	1.51	0.00	5.3	94.7	0.1	-0.16	0.45	0.53	—	4.3	0.002	0.60	0.0	0.04	3.89	0.00	2.169	4.90	0.00	3.9	96.1	0.0	2.19	2.62	0.61	0.74	—	40078	8254	34	0	0	0	0	logfile
✔	8RTB	19485	2024-07-21	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.005	0.82	0.0	0.05	16.06	0.00	2.078	19.87	2.74	5.1	94.9	0.0	-0.17	2.55	0.70	0.84	1.17	14132	1804	9	0	0	0	0	logfile
✔	8RT5	19479	2024-07-22	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.005	0.92	0.0	0.06	16.28	0.00	2.159	19.46	1.54	1.0	99.0	0.0	0.34	3.12	0.90	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8Y1A	38829	2024-07-25	2024-01-24	2.8	2.97	2.85	2.9	0.010	1.01	0.0	0.07	16.23	0.01	2.013	3.57	11.34	6.6	93.2	0.2	-3.08	0.62	0.66	3.09	2.9	0.003	0.74	2.0	0.05	15.59	0.01	2.140	5.39	4.22	5.1	94.9	0.0	-0.79	1.21	0.74	0.84	2.75	29541	3624	21	0	93	0	0	logfile
✔	8Y1G	38835	2024-07-25	2024-01-24	2.99	3.22	3.09	3.1	0.010	0.98	0.0	0.06	16.47	0.01	2.222	4.94	12.14	8.0	92.0	0.0	-4.04	0.66	0.67	2.48	3.1	0.004	0.63	0.0	0.05	15.20	0.01	2.141	8.18	3.94	5.9	94.1	0.0	-1.36	1.22	0.74	0.81	2.31	29541	3624	21	0	93	0	0	logfile
✔	8VSP	43501	2024-07-20	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.066	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.53	0.0	0.04	13.94	0.00	2.257	6.76	1.87	3.5	96.5	0.0	2.45	0.56	0.78	0.79	2.92	11388	1476	12	0	3	0	0	logfile
✔	8Y1H	38836	2024-07-25	2024-01-24	3.16	3.42	3.30	3.2	0.006	0.94	0.0	0.05	17.12	0.01	2.224	6.06	15.19	8.0	92.0	0.0	-4.56	0.62	0.55	1.14	3.2	0.003	0.67	1.0	0.05	15.53	0.00	1.994	11.71	5.39	7.5	92.5	0.0	-2.11	1.29	0.70	0.70	1.02	29541	3624	21	0	93	0	0	logfile
✔	8Y1D	38832	2024-07-26	2024-01-24	2.7	2.85	2.79	2.8	0.011	1.04	1.0	0.07	17.06	0.01	2.238	6.62	13.49	10.0	89.9	0.0	-3.70	0.54	0.53	2.78	2.8	0.003	0.64	0.0	0.04	15.44	0.00	2.149	7.48	3.73	6.4	93.6	0.0	-1.40	1.25	0.71	0.84	2.58	34921	4314	23	0	93	0	0	logfile

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