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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8RRR | 19462 | 2024-07-19 | 2024-01-23 | 3.4 | 3.47 | 2.39 | 3.7 | 0.006 | 0.83 | 0.0 | 0.05 | 15.10 | 0.00 | 2.315 | 9.82 | 0.64 | 9.4 | 90.6 | 0.0 | -4.20 | 0.43 | 0.79 | 5.28 | 3.7 | 0.007 | 0.77 | 0.0 | 0.06 | 15.56 | 0.00 | 2.223 | 11.23 | 4.89 | 11.2 | 88.8 | 0.0 | -4.28 | 1.53 | 0.42 | 0.79 | 5.21 | 4925 | 735 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2024-07-20 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.070 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.004 | 0.66 | 0.0 | 0.04 | 13.65 | 0.01 | 2.108 | 15.31 | 2.60 | 5.3 | 94.7 | 0.0 | -0.81 | 1.13 | 0.68 | 0.67 | 2.47 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XZD | 38793 | 2024-07-20 | 2024-01-21 | 3.47 | 2.63 | 3.52 | 2.8 | 0.018 | 1.68 | 10.0 | 0.15 | 16.41 | 0.01 | 2.052 | 12.09 | 5.31 | 3.0 | 96.8 | 0.1 | 2.42 | 0.80 | 0.75 | 2.60 | 2.4 | 0.005 | 0.74 | 0.0 | 0.04 | 17.29 | 0.00 | 2.084 | 11.06 | 2.15 | 4.1 | 95.9 | 0.0 | 1.13 | 1.12 | 0.79 | 0.82 | 3.05 | 6436 | 791 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8XZF | 38794 | 2024-07-19 | 2024-01-21 | 3.0 | 2.18 | — | 2.9 | 0.007 | 0.72 | 1.0 | 0.05 | 12.98 | 0.00 | 1.326 | 9.31 | 0.51 | 4.3 | 95.5 | 0.2 | -2.36 | 0.79 | 0.81 | 4.27 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.60 | 0.00 | 2.094 | 9.70 | 2.45 | 3.8 | 96.1 | 0.1 | 0.45 | 0.51 | 0.80 | 0.83 | 3.31 | 9062 | 1161 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8XZH | 38796 | 2024-07-19 | 2024-01-21 | 2.6 | 2.02 | — | 1.6 | 0.012 | 0.97 | 0.0 | 0.07 | 13.62 | 0.01 | 2.171 | 7.47 | 0.61 | 4.3 | 95.6 | 0.1 | -1.34 | 0.77 | 0.83 | 5.30 | 1.8 | 0.003 | 0.56 | 0.0 | 0.04 | 16.22 | 0.00 | 2.174 | 7.47 | 2.55 | 2.0 | 98.0 | 0.0 | 1.09 | 0.94 | 0.77 | 0.85 | 3.93 | 9048 | 1159 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XZJ | 38798 | 2024-07-19 | 2024-01-21 | 3.0 | 2.01 | — | 1.7 | 0.011 | 0.94 | 0.0 | 0.06 | 11.33 | 0.01 | 2.252 | 11.85 | 2.72 | 1.8 | 97.9 | 0.3 | 0.36 | 0.70 | 0.73 | 4.12 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.14 | 0.00 | 2.086 | 9.08 | 1.92 | 2.3 | 97.5 | 0.2 | 1.11 | 1.18 | 0.74 | 0.80 | 3.31 | 9106 | 1162 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XZG | 38795 | 2024-07-19 | 2024-01-21 | 3.2 | 3.59 | 3.31 | 3.6 | 0.008 | 0.88 | 0.0 | 0.06 | 14.04 | 0.00 | 2.173 | 9.19 | 1.56 | 6.1 | 93.8 | 0.1 | -2.72 | 0.62 | 0.77 | 2.19 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 16.01 | 0.00 | 2.207 | 5.82 | 3.76 | 3.6 | 96.4 | 0.0 | 0.02 | 0.42 | 0.56 | 0.75 | 1.32 | 7172 | 919 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XXW | 38763 | 2024-07-19 | 2024-01-19 | 3.03 | 2.29 | 3.01 | 2.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.10 | 0.01 | 2.212 | 6.09 | 0.12 | 2.0 | 98.0 | 0.0 | 1.00 | 0.80 | 0.81 | 2.71 | 2.0 | 0.003 | 0.52 | 0.0 | 0.04 | 16.39 | 0.00 | 2.222 | 6.56 | 1.93 | 1.7 | 98.3 | 0.0 | 1.49 | 0.40 | 0.79 | 0.81 | 2.60 | 7723 | 950 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2024-07-20 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 18.57 | 0.00 | 2.198 | 10.00 | 4.43 | 3.9 | 96.1 | 0.0 | 1.96 | 0.75 | 0.65 | 0.84 | 1.17 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ3 | 19431 | 2024-07-20 | 2024-01-17 | 3.21 | 3.47 | 3.25 | 3.5 | 0.009 | 0.81 | 0.0 | 0.05 | 14.58 | 0.00 | 2.149 | 9.58 | 0.00 | 6.2 | 93.8 | 0.0 | -0.39 | 0.61 | 0.85 | 2.21 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.39 | 0.00 | 2.225 | 6.42 | 1.58 | 4.2 | 95.8 | 0.0 | 1.78 | 0.73 | 0.53 | 0.80 | 0.98 | 11375 | 1432 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XW1 | 38727 | 2024-07-19 | 2024-01-15 | 4.49 | 4.73 | 4.24 | 4.6 | 0.005 | 0.82 | 0.0 | 0.05 | 14.01 | 0.01 | 2.139 | 20.22 | 0.19 | 7.2 | 92.8 | 0.0 | -0.07 | 0.59 | 0.82 | — | 4.6 | 0.003 | 0.66 | 0.0 | 0.04 | 13.95 | 0.00 | 2.153 | 13.05 | 0.00 | 5.9 | 94.1 | 0.0 | 1.16 | 1.07 | 0.58 | 0.82 | — | 5082 | 634 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XW4 | 38730 | 2024-07-19 | 2024-01-15 | 3.84 | 4.08 | 3.72 | 4.0 | 0.006 | 0.87 | 0.0 | 0.05 | 14.64 | 0.00 | 1.751 | 14.90 | 0.00 | 10.8 | 89.2 | 0.0 | -0.84 | 0.54 | 0.78 | 1.09 | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 17.09 | 0.00 | 2.283 | 12.53 | 3.81 | 8.5 | 91.5 | 0.0 | 0.21 | 0.52 | 0.54 | 0.77 | 1.13 | 5027 | 619 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XVX | 38721 | 2024-07-20 | 2024-01-15 | 3.32 | 3.60 | 3.32 | 3.6 | 0.007 | 0.76 | 0.0 | 0.05 | 14.52 | 0.01 | 2.136 | 11.14 | 0.00 | 10.0 | 90.0 | 0.0 | -0.50 | 0.66 | 0.81 | 2.26 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.39 | 0.01 | 2.177 | 7.86 | 2.66 | 7.9 | 92.1 | 0.0 | 0.60 | 0.36 | 0.63 | 0.81 | 1.36 | 11110 | 1392 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XVZ | 38724 | 2024-07-19 | 2024-01-15 | 3.78 | 3.95 | 3.77 | 3.8 | 0.011 | 1.05 | 0.0 | 0.05 | 13.53 | 0.01 | 1.969 | 17.84 | 0.00 | 16.2 | 83.5 | 0.3 | -2.09 | 0.67 | 0.81 | 2.88 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 15.63 | 0.01 | 2.150 | 12.57 | 2.93 | 12.4 | 87.3 | 0.2 | -0.41 | 1.17 | 0.63 | 0.77 | 1.75 | 8690 | 1223 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XVY | 38723 | 2024-07-20 | 2024-01-15 | 3.71 | 3.97 | 3.78 | 3.9 | 0.004 | 0.81 | 0.0 | 0.05 | 14.04 | 0.01 | 2.128 | 15.85 | 0.17 | 9.8 | 90.2 | 0.0 | -0.57 | 0.64 | 0.80 | 1.49 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.168 | 13.68 | 2.54 | 8.2 | 91.8 | 0.0 | 0.41 | 0.56 | 0.64 | 0.80 | 1.15 | 10923 | 1361 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XW0 | 38725 | 2024-07-20 | 2024-01-15 | 3.11 | 3.37 | 2.97 | 3.4 | 0.005 | 0.91 | 0.0 | 0.05 | 19.55 | 0.01 | 2.126 | 10.61 | 0.83 | 9.7 | 90.3 | 0.0 | -0.53 | 0.60 | 0.81 | 2.07 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.63 | 0.00 | 2.202 | 9.56 | 1.57 | 8.4 | 91.6 | 0.0 | 0.34 | 1.13 | 0.65 | 0.84 | 1.67 | 11320 | 1392 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8XW2 | 38728 | 2024-07-20 | 2024-01-15 | 3.59 | 3.94 | 3.75 | 3.9 | 0.005 | 0.76 | 0.0 | 0.05 | 13.68 | 0.01 | 2.169 | 11.00 | 0.00 | 5.2 | 94.8 | 0.0 | 0.69 | 0.65 | 0.81 | 2.45 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.74 | 0.00 | 2.186 | 8.35 | 1.61 | 4.6 | 95.4 | 0.0 | 1.30 | 0.47 | 0.66 | 0.81 | 1.85 | 10150 | 1268 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XW3 | 38729 | 2024-07-20 | 2024-01-15 | 3.63 | 3.91 | 3.69 | 3.9 | 0.005 | 0.73 | 0.0 | 0.04 | 13.29 | 0.00 | 2.085 | 8.25 | 0.00 | 4.6 | 95.4 | 0.0 | 1.53 | 0.66 | 0.83 | 2.11 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 15.24 | 0.00 | 2.099 | 8.15 | 1.61 | 3.8 | 96.2 | 0.0 | 1.79 | 0.46 | 0.64 | 0.82 | 1.80 | 10150 | 1268 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XV5 | 38692 | 2024-07-18 | 2024-01-14 | 3.7 | 2.43 | 3.72 | 2.9 | 0.005 | 0.90 | 0.0 | 0.05 | 9.70 | 0.01 | 2.280 | 3.19 | 0.00 | 4.4 | 95.6 | 0.0 | -3.67 | 0.68 | 0.71 | 3.33 | 2.1 | 0.005 | 0.71 | 0.0 | 0.05 | 14.94 | 0.00 | 2.091 | 11.17 | 3.00 | 3.4 | 96.6 | 0.0 | 0.88 | 0.67 | 0.69 | 0.72 | 3.17 | 3122 | 388 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8XV9 | 38693 | 2024-07-18 | 2024-01-14 | 3.8 | 2.50 | 3.79 | 2.0 | 0.008 | 0.94 | 0.0 | 0.05 | 12.31 | 0.01 | 2.402 | 2.22 | 0.00 | 5.5 | 94.5 | 0.0 | -3.53 | 0.58 | 0.61 | 1.87 | 2.7 | 0.004 | 0.75 | 0.0 | 0.04 | 17.17 | 0.00 | 2.073 | 12.03 | 2.70 | 3.9 | 96.1 | 0.0 | 1.17 | 1.32 | 0.60 | 0.64 | 1.45 | 3147 | 388 | 2 | 0 | 1 | 0 | 0 | logfile |