Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y19	38828	2024-07-25	2024-01-24	2.3	2.48	2.41	2.5	0.006	0.83	0.0	0.06	14.35	0.01	2.279	1.52	6.19	4.3	95.7	0.0	-1.92	0.57	0.64	4.23	2.5	0.003	0.66	0.0	0.05	14.54	0.00	2.204	3.37	3.11	3.8	96.2	0.0	-0.18	1.22	0.75	0.86	3.99	29541	3624	21	0	93	0	0	logfile
✔	8Y1B	38830	2024-07-25	2024-01-24	2.8	3.01	2.88	3.0	0.007	0.85	0.0	0.07	15.65	0.01	2.273	3.23	9.92	6.0	94.0	0.0	-3.12	0.63	0.67	2.78	3.0	0.004	0.64	0.0	0.05	14.99	0.01	1.960	5.40	4.13	5.4	94.6	0.0	-0.85	0.52	0.75	0.86	2.34	29541	3624	21	0	93	0	0	logfile
✔	8Y1D	38832	2024-07-26	2024-01-24	2.7	2.85	2.79	2.8	0.011	1.04	1.0	0.07	17.06	0.01	2.238	6.62	13.49	10.0	89.9	0.0	-3.70	0.54	0.53	2.78	2.8	0.003	0.64	0.0	0.04	15.44	0.00	2.149	7.48	3.73	6.4	93.6	0.0	-1.40	1.25	0.71	0.84	2.58	34921	4314	23	0	93	0	0	logfile
✔	8Y1F	38834	2024-07-25	2024-01-24	2.8	3.01	2.88	3.0	0.005	0.76	0.0	0.05	14.27	0.01	2.272	2.00	6.87	4.6	95.3	0.0	-2.79	0.65	0.72	3.57	3.0	0.003	0.58	0.0	0.04	14.18	0.00	2.143	4.21	3.11	3.9	96.1	0.0	-0.52	0.51	0.75	0.87	3.15	29541	3624	21	0	93	0	0	logfile
✔	8Y1A	38829	2024-07-25	2024-01-24	2.8	2.97	2.85	2.9	0.010	1.01	0.0	0.07	16.23	0.01	2.013	3.57	11.34	6.6	93.2	0.2	-3.08	0.62	0.66	3.09	2.9	0.003	0.74	2.0	0.05	15.59	0.01	2.140	5.39	4.22	5.1	94.9	0.0	-0.79	1.21	0.74	0.84	2.75	29541	3624	21	0	93	0	0	logfile
✔	8Y1E	38833	2024-07-27	2024-01-24	2.7	2.89	2.81	2.9	0.010	1.07	0.0	0.07	17.71	0.01	2.244	7.62	15.59	11.3	88.6	0.2	-4.10	0.54	0.52	2.18	2.8	0.004	0.73	0.0	0.05	16.28	0.00	2.125	9.69	5.26	8.2	91.8	0.0	-2.03	0.78	0.68	0.79	1.94	37611	4659	24	0	93	0	0	logfile
✔	8VSP	43501	2024-07-20	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.066	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.53	0.0	0.04	13.94	0.00	2.257	6.76	1.87	3.5	96.5	0.0	2.45	0.56	0.78	0.79	2.92	11388	1476	12	0	3	0	0	logfile
✔	8RRR	19462	2024-07-19	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.007	0.77	0.0	0.06	15.56	0.00	2.223	11.23	4.89	11.2	88.8	0.0	-4.28	1.53	0.42	0.79	5.21	4925	735	10	0	0	0	0	logfile
✔	8VRW	43488	2024-07-20	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.070	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.004	0.66	0.0	0.04	13.65	0.01	2.108	15.31	2.60	5.3	94.7	0.0	-0.81	1.13	0.68	0.67	2.47	10413	1272	9	0	0	0	0	logfile
✔	8XZG	38795	2024-07-19	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	3.6	0.003	0.55	0.0	0.04	16.01	0.00	2.207	5.82	3.76	3.6	96.4	0.0	0.02	0.42	0.56	0.75	1.32	7172	919	5	0	0	0	0	logfile
✔	8XZF	38794	2024-07-19	2024-01-21	3.0	2.18	—	2.9	0.007	0.72	1.0	0.05	12.98	0.00	1.326	9.31	0.51	4.3	95.5	0.2	-2.36	0.79	0.81	4.27	2.9	0.003	0.60	0.0	0.04	15.60	0.00	2.094	9.70	2.45	3.8	96.1	0.1	0.45	0.51	0.80	0.83	3.31	9062	1161	7	0	1	0	0	logfile
✔	8XZD	38793	2024-07-20	2024-01-21	3.47	2.63	3.52	2.8	0.018	1.68	10.0	0.15	16.41	0.01	2.052	12.09	5.31	3.0	96.8	0.1	2.42	0.80	0.75	2.60	2.4	0.005	0.74	0.0	0.04	17.29	0.00	2.084	11.06	2.15	4.1	95.9	0.0	1.13	1.12	0.79	0.82	3.05	6436	791	3	0	1	0	0	logfile
✔	8XZH	38796	2024-07-19	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.003	0.56	0.0	0.04	16.22	0.00	2.174	7.47	2.55	2.0	98.0	0.0	1.09	0.94	0.77	0.85	3.93	9048	1159	6	0	0	0	0	logfile
✔	8XZJ	38798	2024-07-19	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.003	0.61	0.0	0.04	15.14	0.00	2.086	9.08	1.92	2.3	97.5	0.2	1.11	1.18	0.74	0.80	3.31	9106	1162	6	0	0	0	0	logfile
✔	8XXW	38763	2024-07-19	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.52	0.0	0.04	16.39	0.00	2.222	6.56	1.93	1.7	98.3	0.0	1.49	0.40	0.79	0.81	2.60	7723	950	6	0	4	0	0	logfile
✔	8RQ3	19431	2024-07-20	2024-01-17	3.21	3.47	3.25	3.5	0.009	0.81	0.0	0.05	14.58	0.00	2.149	9.58	0.00	6.2	93.8	0.0	-0.39	0.61	0.85	2.21	3.5	0.003	0.55	0.0	0.04	16.39	0.00	2.225	6.42	1.58	4.2	95.8	0.0	1.78	0.73	0.53	0.80	0.98	11375	1432	1	0	0	0	0	logfile
✔	8RQ4	19433	2024-07-20	2024-01-17	3.45	3.84	3.57	3.8	0.007	0.72	0.0	0.05	18.58	0.00	2.209	11.02	0.64	4.5	95.5	0.0	1.28	0.61	0.78	1.01	3.8	0.003	0.58	0.0	0.04	18.57	0.00	2.198	10.00	4.43	3.9	96.1	0.0	1.96	0.75	0.65	0.84	1.17	11210	1402	2	0	3	0	0	logfile
✔	8XW4	38730	2024-07-19	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.77	0.0	0.04	17.09	0.00	2.283	12.53	3.81	8.5	91.5	0.0	0.21	0.52	0.54	0.77	1.13	5027	619	1	0	0	0	0	logfile
✔	8XW2	38728	2024-07-20	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.66	0.0	0.04	15.74	0.00	2.186	8.35	1.61	4.6	95.4	0.0	1.30	0.47	0.66	0.81	1.85	10150	1268	2	0	0	0	0	logfile
✔	8XW1	38727	2024-07-19	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.66	0.0	0.04	13.95	0.00	2.153	13.05	0.00	5.9	94.1	0.0	1.16	1.07	0.58	0.82	—	5082	634	1	0	0	0	0	logfile

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