Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Jio	36322	2024-07-19	2023-05-27	3.3	2.64	3.35	2.1	0.002	0.52	0.0	0.04	8.53	0.00	2.220	9.16	3.78	8.5	91.4	0.1	-4.63	0.67	0.63	1.37	2.1	0.004	0.79	0.0	0.05	13.44	0.00	2.110	16.11	4.19	11.4	88.4	0.2	-2.88	1.25	0.70	0.69	1.42	8698	1120	3	0	0	0	0	logfile
✔	8JiF	36311	2024-07-21	2023-05-26	2.28	3.16	2.24	2.8	0.005	1.14	0.0	0.05	17.82	0.01	1.676	18.52	12.43	8.7	88.5	2.9	-2.44	0.74	0.73	4.13	2.8	0.003	0.62	0.0	0.04	16.41	0.00	2.099	6.40	3.05	7.0	92.5	0.5	-0.67	0.73	0.76	0.89	4.50	14630	1831	5	0	1	0	0	logfile
✔	8JiA	36304	2024-07-20	2023-05-26	3.9	3.78	3.74	3.3	0.005	1.06	0.0	0.06	12.52	0.01	2.306	6.26	0.33	7.1	92.6	0.2	-3.20	0.75	0.78	0.95	3.3	0.003	0.68	0.0	0.04	14.06	0.00	2.198	14.01	1.98	6.9	92.9	0.2	-0.55	0.51	0.75	0.80	0.81	9587	1327	7	0	2	0	0	logfile
✔	8JiM	36318	2024-07-19	2023-05-26	2.98	2.35	—	3.2	0.007	0.91	0.0	0.05	13.51	0.00	2.232	10.37	0.41	5.8	94.2	0.1	-1.91	0.75	0.79	2.75	3.2	0.003	0.66	0.0	0.04	16.26	0.00	2.132	7.10	2.13	3.7	96.3	0.0	-0.57	1.00	0.76	0.83	2.52	9051	1144	6	0	2	1	0	logfile
✔	8Jii	36312	2024-07-20	2023-05-26	3.17	2.37	—	3.4	0.006	0.84	0.0	0.05	14.12	0.00	1.963	7.59	0.10	4.6	95.4	0.0	-1.97	0.74	0.78	3.14	3.4	0.003	0.58	0.0	0.04	15.56	0.00	2.180	5.70	1.83	4.6	95.4	0.0	-0.82	0.30	0.76	0.82	2.47	9083	1144	6	0	3	1	0	logfile
✔	8SZ4	40901	2024-07-18	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.62	0.0	0.04	13.44	0.00	2.056	6.68	0.42	2.8	97.2	0.0	1.78	2.06	0.43	0.67	1.03	4346	259	1	0	0	0	2184	logfile
✔	8Ji0	36303	2024-07-18	2023-05-25	3.0	3.17	2.87	3.1	0.009	1.20	8.0	0.09	16.50	0.01	1.905	10.06	6.46	8.9	90.4	0.6	-1.71	0.66	0.72	3.00	3.1	0.003	0.68	0.0	0.05	17.07	0.00	2.092	9.67	3.35	7.1	92.9	0.0	-0.74	1.27	0.66	0.74	3.08	3934	498	2	0	0	0	0	logfile
✔	8JHR	36285	2024-07-18	2023-05-25	3.52	3.75	3.52	3.7	0.007	0.74	0.0	0.05	17.69	0.00	2.208	10.96	0.29	2.6	97.4	0.0	1.78	0.61	0.82	1.53	3.7	0.003	0.66	0.0	0.04	17.77	0.00	2.167	9.46	5.78	2.3	97.7	0.0	2.29	0.35	0.61	0.81	0.87	3302	430	2	0	1	0	0	logfile
✔	8SYG	40873	2024-07-25	2023-05-25	2.6	2.75	2.57	2.8	0.013	1.79	0.0	0.08	12.96	0.02	2.578	0.00	0.00	2.3	97.7	0.0	1.34	0.62	0.81	6.98	2.8	0.004	0.60	0.0	0.04	15.73	0.01	2.417	1.74	1.28	2.1	97.9	0.0	2.30	1.24	0.65	0.84	5.78	29932	1876	14	0	0	0	14714	logfile
✔	8SYi	40874	2024-07-25	2023-05-25	2.94	3.75	3.00	3.4	0.004	0.64	0.0	0.04	20.72	0.01	2.138	6.87	6.06	7.7	91.9	0.3	-1.52	0.89	0.87	2.21	3.5	0.005	0.81	1.0	0.05	19.97	0.01	1.832	8.47	3.75	6.9	92.9	0.2	-0.82	0.58	0.87	0.90	1.96	29500	3537	12	91	3	0	0	logfile
✔	8P6A	17462	2024-07-18	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.004	0.62	0.0	0.04	17.51	0.00	2.145	10.33	3.46	2.1	97.9	0.0	2.89	0.86	0.58	0.82	1.18	3337	432	1	0	0	0	0	logfile
✔	8JHU	36294	2024-07-19	2023-05-25	3.1	3.30	3.08	3.3	0.003	0.59	0.0	0.04	15.64	0.01	2.200	10.88	0.82	5.4	94.1	0.5	-0.27	0.69	0.84	2.83	3.3	0.006	0.63	0.0	0.04	16.05	0.00	2.116	11.64	2.33	7.0	93.0	0.0	-0.13	0.38	0.71	0.87	3.43	6554	811	1	0	0	0	0	logfile
✔	8SYo	40886	2024-07-20	2023-05-25	2.94	2.44	—	2.1	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.77	0.76	2.68	2.0	0.005	0.77	0.0	0.05	17.07	0.00	2.174	13.83	2.57	3.4	96.6	0.0	1.22	1.28	0.78	0.78	2.49	10069	1259	3	0	0	0	0	logfile
✔	8SYM	40884	2024-07-18	2023-05-25	3.2	2.36	3.28	1.9	0.004	0.54	0.0	0.04	13.67	0.00	2.253	8.35	0.00	1.8	98.2	0.0	1.78	0.77	0.78	2.57	1.9	0.005	0.60	0.0	0.04	16.45	0.00	2.173	11.36	1.20	1.6	98.4	0.0	1.86	0.41	0.78	0.79	2.41	4486	560	2	0	0	0	0	logfile
✔	8SYP	40889	2024-07-21	2023-05-25	2.6	3.28	2.65	3.1	0.006	0.98	0.0	0.05	27.37	0.01	2.273	4.40	0.59	3.1	96.9	0.0	-0.62	0.85	0.88	2.66	3.1	0.004	0.60	0.0	0.04	27.47	0.00	2.091	8.10	1.77	3.2	96.8	0.0	1.70	0.37	0.82	0.85	2.74	15472	1199	12	294	0	0	0	logfile
✔	8SYN	40885	2024-07-20	2023-05-25	2.94	2.38	2.98	2.0	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.71	0.70	2.87	2.0	0.004	0.70	0.0	0.05	16.38	0.00	2.144	11.71	2.39	2.4	97.6	0.0	1.25	1.16	0.74	0.75	2.82	10069	1259	3	0	0	0	0	logfile
✔	8SXT	40858	2024-07-19	2023-05-24	3.3	2.61	3.32	3.0	0.003	0.60	0.0	0.04	17.79	0.00	2.039	11.35	0.45	3.7	96.1	0.1	0.31	0.74	0.76	2.14	2.2	0.003	0.63	0.0	0.04	18.49	0.00	2.015	12.05	4.22	4.0	95.8	0.1	0.68	0.62	0.75	0.79	2.03	6382	726	5	18	2	0	0	logfile
✔	8SXU	40859	2024-07-19	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	1.8	0.003	0.69	0.0	0.04	18.39	0.00	2.028	20.15	4.52	4.8	95.2	0.0	-0.52	0.65	0.66	0.65	0.42	6207	726	2	10	0	0	0	logfile
✔	8JHB	36261	2024-07-19	2023-05-23	3.3	2.35	3.35	2.1	0.003	0.75	0.0	0.05	14.03	0.00	2.146	6.34	0.11	4.7	95.3	0.0	-0.77	0.72	0.71	1.81	2.1	0.002	0.60	0.0	0.04	16.14	0.00	2.078	10.70	1.50	4.2	95.8	0.0	0.28	0.41	0.72	0.72	1.70	8648	1093	5	0	0	0	0	logfile
✔	8JHi	36266	2024-07-19	2023-05-23	3.2	3.84	3.46	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.003	0.66	0.0	0.04	15.86	0.00	2.139	12.84	2.59	5.2	94.8	0.0	0.07	0.45	0.62	0.80	1.60	8562	1077	5	0	0	0	0	logfile

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