Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P51	17436	2024-07-20	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.006	0.80	0.0	0.04	15.01	0.00	2.120	10.75	1.05	4.0	95.9	0.1	0.82	1.70	0.89	0.85	1.75	12389	1574	1	0	0	0	0	logfile
✔	8P4X	17429	2024-07-19	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	2.8	0.002	0.53	0.0	0.04	15.08	0.00	2.286	2.59	1.08	1.4	98.6	0.0	0.62	0.37	0.68	0.84	3.87	8756	1052	6	0	4	84	0	logfile
✔	8JHF	36264	2024-07-21	2023-05-23	3.68	3.48	3.63	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.003	0.56	0.0	0.03	27.69	0.00	2.144	8.41	1.87	4.2	95.7	0.1	1.09	0.39	0.80	0.82	0.68	14703	1029	12	320	2	0	0	logfile
✔	8JHK	36271	2024-07-23	2023-05-23	4.76	3.55	4.44	3.3	0.006	0.94	0.0	0.05	14.92	0.01	2.041	36.60	0.00	11.8	88.2	0.0	-3.03	0.76	0.76	—	3.4	0.003	0.76	0.0	0.05	14.99	0.01	2.068	21.28	0.00	7.2	92.8	0.0	-1.47	0.54	0.76	0.75	—	20512	2509	3	0	0	0	0	logfile
✔	8P50	17435	2024-07-21	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	3.9	0.003	0.68	0.0	0.04	13.99	0.00	1.858	7.85	0.14	4.0	95.9	0.1	0.56	1.31	0.61	0.02	—	13714	1735	3	0	2	0	0	logfile
✔	8JHG	36265	2024-07-21	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.2	0.004	0.60	0.0	0.03	26.84	0.00	2.151	9.36	1.62	6.0	94.0	0.0	0.78	1.34	0.81	0.84	1.11	14829	1040	12	320	2	0	0	logfile
✔	8P53	17445	2024-07-22	2023-05-23	2.7	2.29	2.79	2.0	0.004	0.65	0.0	0.04	13.22	0.00	1.943	8.14	0.11	3.2	96.8	0.0	-0.24	0.79	0.81	3.54	2.0	0.004	0.63	0.0	0.04	16.54	0.00	1.969	9.09	2.40	3.5	96.5	0.0	0.55	1.03	0.80	0.82	3.04	16299	2071	8	0	4	0	0	logfile
✔	8P52	17440	2024-07-23	2023-05-23	3.6	3.64	—	3.4	0.002	0.63	0.0	0.04	13.73	0.01	2.166	3.44	0.00	5.6	94.4	0.0	-2.19	0.78	0.55	1.88	3.4	0.003	0.65	0.0	0.04	15.43	0.00	2.103	8.94	1.62	4.2	95.8	0.0	0.20	1.53	0.85	0.74	1.39	22783	2914	1	0	0	0	0	logfile
✔	8P4i	17409	2024-07-28	2023-05-22	3.83	4.09	—	4.0	0.012	1.73	13.0	0.09	14.63	0.01	2.265	0.43	1.50	4.8	94.9	0.2	-2.25	0.75	0.86	3.52	4.0	0.004	0.74	2.0	0.05	15.93	0.00	2.042	5.60	2.48	6.3	93.7	0.0	-1.36	0.56	0.76	0.87	2.85	42976	5389	17	0	0	0	0	logfile
✔	8SXJ	40854	2024-07-22	2023-05-22	4.0	4.15	4.01	4.2	0.019	1.76	7.0	0.09	13.38	0.02	2.555	0.19	1.10	7.0	92.3	0.7	-1.09	0.63	0.78	—	4.2	0.003	0.74	0.0	0.04	16.22	0.00	2.163	10.07	3.24	5.0	94.9	0.0	-0.55	1.18	0.65	0.82	—	19050	2415	12	0	0	0	0	logfile
✔	8JH4	36253	2024-07-28	2023-05-22	3.2	3.52	3.35	3.2	0.005	0.76	1.0	0.05	19.43	0.01	1.977	9.27	0.17	3.0	96.9	0.1	-0.84	0.74	0.65	1.97	3.2	0.003	0.58	0.0	0.04	20.53	0.00	2.008	9.52	0.88	3.4	96.6	0.0	0.95	0.80	0.86	0.82	2.20	44415	4671	29	354	9	0	0	logfile
✔	8JH5	36254	2024-07-19	2023-05-22	3.7	3.92	3.73	3.9	0.006	0.96	0.0	0.05	9.93	0.01	2.319	3.06	0.00	5.9	94.1	0.0	-5.76	0.61	0.83	2.59	3.9	0.002	0.69	0.0	0.04	14.25	0.00	2.266	6.19	1.81	3.0	97.0	0.0	-0.12	1.32	0.60	0.83	1.06	7734	988	6	0	2	0	0	logfile
✔	8SXN	40855	2024-07-22	2023-05-22	4.04	4.34	4.06	4.1	0.012	1.26	0.0	0.06	12.20	0.01	2.369	2.31	0.05	3.0	95.8	1.1	-0.38	0.87	0.82	—	4.1	0.003	0.64	0.0	0.04	14.01	0.00	2.149	10.58	0.00	6.4	93.2	0.3	0.11	1.87	0.87	0.83	—	17708	2200	6	0	4	0	0	logfile
✔	8SXH	40852	2024-07-22	2023-05-22	3.94	4.17	3.93	4.1	0.003	0.46	0.0	0.04	13.70	0.00	1.996	7.04	0.00	4.2	95.8	0.0	1.11	0.80	0.77	1.36	4.1	0.003	0.60	0.0	0.04	15.63	0.00	2.095	10.27	1.58	3.8	96.2	0.0	0.91	0.48	0.80	0.77	1.30	19719	2604	12	0	21	0	0	logfile
✔	8JH3	36252	2024-07-28	2023-05-22	3.7	3.96	3.80	3.6	0.005	0.71	0.0	0.04	19.21	0.00	1.149	8.81	0.35	3.2	96.7	0.1	-0.79	0.73	0.60	1.47	3.7	0.007	0.80	0.0	0.04	20.43	0.01	1.912	16.35	1.43	5.4	94.6	0.0	0.02	0.91	0.84	0.76	1.61	43416	4655	29	313	9	0	0	logfile
✔	8P4K	17410	2024-07-25	2023-05-22	3.8	3.61	4.17	3.8	0.020	2.62	0.0	0.10	9.97	0.01	2.351	1.00	0.00	1.0	99.0	0.0	0.04	0.30	0.42	1.07	3.6	0.003	1.08	0.0	0.04	13.47	0.00	1.954	16.26	1.08	4.5	95.5	0.0	-0.05	0.82	0.37	0.52	0.93	29211	1797	3	0	0	0	14643	logfile
✔	8SXF	40850	2024-07-20	2023-05-22	3.92	4.19	3.95	4.0	0.002	0.48	0.0	0.04	15.08	0.00	2.063	9.57	0.00	3.7	96.3	0.0	1.25	0.79	0.72	0.88	4.0	0.002	0.57	0.0	0.04	16.52	0.00	2.189	11.86	2.09	2.9	97.1	0.0	1.28	0.53	0.80	0.74	0.54	11321	1471	5	0	6	0	0	logfile
✔	8SXG	40851	2024-07-20	2023-05-22	4.14	4.41	4.12	4.2	0.002	0.50	0.0	0.04	14.01	0.00	1.889	8.99	0.00	3.3	96.7	0.0	0.78	0.83	0.74	—	4.2	0.002	0.56	0.0	0.04	14.49	0.00	2.136	12.06	0.00	3.3	96.7	0.0	0.73	0.48	0.83	0.76	—	11372	1477	5	0	6	0	0	logfile
✔	8SXE	40849	2024-07-19	2023-05-22	3.55	3.79	3.56	3.8	0.002	0.47	0.0	0.04	14.58	0.00	2.089	6.48	0.00	3.6	96.4	0.0	0.44	0.75	0.76	1.64	3.7	0.004	0.60	0.0	0.04	16.62	0.00	2.177	9.24	2.27	5.4	94.6	0.0	0.57	0.50	0.76	0.77	1.47	8285	1094	6	0	7	0	0	logfile
✔	8JH7	36258	2024-07-19	2023-05-22	3.2	2.35	3.28	2.1	0.003	0.77	0.0	0.05	13.57	0.01	2.240	6.25	0.00	5.0	95.0	0.0	-1.48	0.74	0.73	2.56	2.1	0.004	0.70	0.0	0.04	16.26	0.00	2.188	12.63	2.65	5.4	94.6	0.0	0.08	1.06	0.75	0.76	2.55	7663	988	4	0	0	0	0	logfile

• ← previous
• Page 65 of 478
• next →