Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PKP	17751	2023-08-12	2023-06-27	3.2	4.15	3.27	3.5	0.006	0.67	0.0	0.04	17.68	0.01	2.193	11.76	0.52	2.7	97.3	0.0	0.64	0.87	0.81	1.59	3.5	0.003	0.63	0.0	0.04	17.63	0.00	2.115	12.78	0.27	2.7	97.3	0.0	1.55	0.54	0.90	0.86	1.44	64691	8135	20	0	1	0	0	logfile
✔	8PHP	17670	2023-08-25	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.002	0.51	0.0	0.04	15.75	0.00	2.185	6.11	1.09	1.9	98.1	0.0	2.08	1.36	0.75	0.90	2.84	40812	4968	24	0	0	0	0	logfile
✔	8PHo	17669	2023-08-21	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.002	0.50	0.0	0.04	16.96	0.00	2.202	2.96	0.78	0.4	99.6	0.0	1.21	0.50	0.72	0.85	4.41	32172	3804	12	0	0	720	0	logfile
✔	8JoL	36459	2023-08-10	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	17.24	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.83	0.0	0.04	16.02	0.00	1.975	9.53	1.43	3.5	96.5	0.0	0.45	2.18	0.62	0.88	1.90	8513	1087	5	0	4	0	0	logfile
✔	8JNS	36450	2023-08-18	2023-06-06	4.2	5.01	4.21	3.5	0.010	1.52	0.0	0.08	17.90	0.01	1.390	39.59	17.81	12.8	86.4	0.8	-4.88	0.88	0.76	—	3.5	0.004	0.78	0.0	0.04	13.26	0.00	1.800	16.55	0.00	5.3	94.7	0.0	0.09	1.22	0.91	0.86	—	24168	2985	15	0	12	0	0	logfile
✔	8T2U	40988	2023-08-10	2023-06-06	3.1	3.94	3.08	3.5	0.014	1.65	0.0	0.08	17.06	0.01	1.807	30.14	4.62	8.1	91.6	0.2	-2.18	0.85	0.77	1.42	3.6	0.004	0.74	0.0	0.05	16.84	0.00	1.871	22.60	0.29	7.6	92.3	0.1	-1.59	0.54	0.83	0.72	1.25	6552	822	8	0	21	2	0	logfile
✔	8Jo0	36451	2023-08-19	2023-06-06	3.6	4.68	3.50	3.5	0.009	1.48	1.0	0.08	20.62	0.01	1.813	62.06	27.27	13.8	84.9	1.3	-4.82	0.84	0.71	0.75	3.6	0.003	0.84	0.0	0.04	16.36	0.00	1.922	13.55	0.06	4.8	95.2	0.0	0.09	3.15	0.88	0.84	1.44	27362	3382	20	0	14	0	0	logfile
✔	8T2V	40989	2023-08-13	2023-06-06	3.4	4.28	3.49	3.7	0.016	1.93	1.0	0.10	17.05	0.01	1.751	11.21	5.50	9.1	90.0	1.0	-1.99	0.91	0.84	2.12	3.7	0.003	0.72	0.0	0.04	16.81	0.00	1.979	10.43	0.00	6.3	93.5	0.1	-0.63	1.15	0.91	0.84	2.10	13134	1664	10	0	34	6	0	logfile
✔	8JLZ	36409	2023-08-10	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.79	0.0	0.04	13.38	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.003	0.56	0.0	0.04	15.11	0.00	2.129	6.41	0.25	2.4	97.6	0.0	0.27	0.35	0.79	0.79	2.31	7730	1015	5	0	1	0	0	logfile
✔	8T1o	40973	2023-08-13	2023-06-02	3.3	3.56	3.30	3.5	0.003	0.59	0.0	0.04	14.79	0.00	2.146	8.73	0.00	3.0	96.9	0.1	0.93	0.60	0.69	1.99	3.5	0.004	0.58	0.0	0.04	16.24	0.00	2.146	9.05	0.20	3.3	96.7	0.1	0.77	0.96	0.70	0.84	1.91	13800	1727	6	0	1	0	0	logfile
✔	8T1F	40962	2023-08-16	2023-06-02	3.49	3.75	3.60	3.7	0.007	1.37	0.0	0.06	14.05	0.01	2.171	4.71	0.85	11.6	87.7	0.6	-5.59	0.62	0.82	3.07	3.7	0.003	0.78	0.0	0.04	15.92	0.00	2.125	10.83	0.31	9.5	90.2	0.2	-1.34	1.17	0.68	0.85	2.23	20790	2542	8	0	8	0	0	logfile
✔	8T1D	40960	2023-08-16	2023-06-02	3.35	3.74	3.50	3.7	0.027	1.47	0.0	0.21	12.15	0.01	2.170	6.09	0.72	12.2	87.1	0.6	-5.63	0.57	0.77	2.57	3.7	0.004	1.07	0.0	0.09	15.79	0.00	1.971	16.99	0.54	11.6	87.9	0.6	-2.21	0.76	0.57	0.80	1.98	20338	2502	8	0	4	0	0	logfile
✔	8JKB	36367	2023-08-14	2023-06-01	3.27	4.57	3.29	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.004	0.81	0.0	0.04	15.44	0.00	2.132	14.34	0.37	3.9	96.1	0.0	-1.64	0.93	0.90	0.85	2.01	17169	2220	15	0	0	0	0	logfile
✔	8P83	17540	2023-08-23	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	8P82	17539	2023-08-18	2023-05-31	3.36	4.33	3.37	3.4	0.013	1.11	2.0	0.09	12.80	0.01	2.221	0.89	0.07	3.8	96.0	0.2	-0.97	0.84	0.70	0.97	3.4	0.002	0.64	0.0	0.04	14.65	0.00	2.109	6.13	0.11	2.6	97.4	0.0	1.76	1.81	0.85	0.70	0.93	25156	3192	4	0	6	0	0	logfile
✔	8SZB	40907	2023-08-09	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.92	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.61	0.0	0.04	17.63	0.00	2.065	8.54	0.00	1.8	98.2	0.0	4.01	0.70	0.51	0.79	1.65	4962	612	12	0	6	0	0	logfile
✔	8JJ5	36340	2023-08-13	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	15.54	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.003	0.71	0.0	0.04	16.25	0.00	2.080	16.29	0.41	6.1	93.9	0.0	-0.01	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8SZA	40905	2023-08-09	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	8SYi	40874	2023-08-20	2023-05-25	2.94	3.75	3.00	3.4	0.004	0.64	0.0	0.04	20.53	0.01	2.138	6.87	6.06	7.7	91.9	0.3	-1.52	0.89	0.87	2.21	3.5	0.005	0.67	0.0	0.04	19.90	0.01	2.096	8.77	5.49	7.9	91.9	0.3	-0.82	0.59	0.87	0.89	2.03	29500	3537	12	91	3	0	0	logfile
✔	8P6A	17462	2023-08-09	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.003	0.65	0.0	0.04	17.37	0.00	2.146	11.22	0.00	3.1	96.9	0.0	2.99	0.85	0.57	0.81	1.29	3337	432	1	0	0	0	0	logfile

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