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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5Lii | 4053 | 2023-08-08 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSQ | 24677 | 2023-08-09 | 2021-08-11 | 3.8 | 4.03 | 3.73 | 4.1 | 0.008 | 0.80 | 0.0 | 0.05 | 12.74 | 0.00 | 2.360 | 4.01 | 2.88 | 3.0 | 97.0 | 0.0 | -0.64 | 0.63 | 0.68 | 1.39 | 4.1 | 0.003 | 0.53 | 0.0 | 0.03 | 15.41 | 0.00 | 2.381 | 3.76 | 0.48 | 3.0 | 97.0 | 0.0 | 2.46 | 1.83 | 0.64 | 0.71 | 1.77 | 3970 | 246 | 1 | 0 | 0 | 0 | 1958 | logfile |
✔ | 8DQL | 27656 | 2023-08-09 | 2022-07-19 | 3.0 | 2.95 | 2.90 | 2.9 | 0.002 | 0.47 | 0.0 | 0.04 | 14.89 | 0.00 | 2.309 | 5.10 | 0.00 | 3.6 | 96.4 | 0.0 | 2.01 | 0.74 | 0.81 | 1.75 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.66 | 0.00 | 2.244 | 6.10 | 2.06 | 4.4 | 95.6 | 0.0 | 1.72 | 3.33 | 0.76 | 0.84 | 1.87 | 6402 | 771 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDH | 31543 | 2023-08-09 | 2021-07-16 | 3.72 | 3.93 | — | 3.8 | 0.004 | 0.73 | 0.0 | 0.05 | 14.58 | 0.00 | 2.145 | 13.20 | 0.29 | 3.8 | 96.2 | 0.0 | -2.91 | 0.72 | 0.81 | 2.27 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.26 | 0.00 | 2.200 | 12.65 | 0.58 | 2.2 | 97.8 | 0.0 | 1.14 | 0.61 | 0.71 | 0.80 | 2.01 | 6488 | 791 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6W4S | 21539 | 2023-08-09 | 2020-03-11 | 3.2 | 3.63 | — | 3.6 | 0.004 | 0.57 | 0.0 | 0.04 | 14.38 | 0.00 | 2.176 | 8.10 | 4.45 | 5.6 | 94.4 | 0.0 | -1.13 | 0.61 | 0.85 | 2.37 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 15.27 | 0.00 | 2.146 | 9.20 | 0.19 | 3.8 | 96.2 | 0.0 | 1.79 | 0.46 | 0.57 | 0.84 | 2.13 | 4986 | 650 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T32 | 25648 | 2023-08-09 | 2021-12-06 | 3.4 | 3.96 | — | 3.9 | 0.006 | 0.77 | 0.0 | 0.04 | 14.07 | 0.01 | 2.313 | 6.67 | 0.00 | 5.1 | 94.6 | 0.3 | 1.86 | 0.44 | 0.76 | 0.75 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 16.41 | 0.00 | 2.232 | 8.43 | 1.06 | 4.3 | 95.4 | 0.3 | 2.45 | 0.95 | 0.41 | 0.76 | 0.65 | 2861 | 375 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8E28 | 27828 | 2023-08-09 | 2022-08-14 | 3.1 | 3.26 | 3.15 | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 16.45 | 0.01 | 2.316 | 3.83 | 0.00 | 1.5 | 98.5 | 0.0 | -1.72 | 0.75 | 0.85 | 3.17 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 17.09 | 0.00 | 2.204 | 5.32 | 0.49 | 1.5 | 98.5 | 0.0 | 0.26 | 0.73 | 0.76 | 0.87 | 2.64 | 5789 | 690 | 2 | 15 | 0 | 0 | 0 | logfile |
✔ | 8DKW | 27492 | 2023-08-09 | 2022-07-06 | 3.09 | 3.64 | 3.05 | 3.6 | 0.006 | 0.71 | 1.0 | 0.06 | 13.84 | 0.00 | 2.097 | 8.61 | 0.41 | 6.2 | 93.8 | 0.0 | -2.92 | 0.60 | 0.83 | 3.25 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.12 | 0.00 | 2.153 | 6.55 | 0.21 | 5.5 | 94.5 | 0.0 | -0.24 | 0.34 | 0.56 | 0.83 | 2.75 | 4370 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGR | 10182 | 2023-08-09 | 2019-08-05 | 3.17 | 3.28 | 3.08 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.56 | 0.00 | 2.201 | 5.15 | 0.00 | 3.2 | 96.8 | 0.0 | -3.06 | 0.69 | 0.83 | 3.52 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.44 | 0.00 | 2.003 | 5.76 | 0.10 | 3.2 | 96.8 | 0.0 | 1.08 | 0.77 | 0.66 | 0.84 | 2.89 | 54142 | 3528 | 8 | 0 | 0 | 0 | 27330 | logfile |
✔ | 7DCR | 30640 | 2023-08-09 | 2020-10-26 | 3.15 | 3.27 | — | 3.2 | 0.005 | 0.89 | 1.0 | 0.06 | 10.49 | 0.01 | 2.260 | 4.10 | 0.63 | 3.0 | 96.7 | 0.3 | -4.71 | 0.66 | 0.78 | 3.15 | 3.2 | 0.002 | 0.59 | 0.0 | 0.04 | 13.95 | 0.00 | 2.155 | 7.76 | 0.47 | 3.3 | 96.7 | 0.0 | 0.55 | 0.69 | 0.67 | 0.81 | 2.29 | 5653 | 711 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UKJ | 20806 | 2023-08-09 | 2019-10-05 | 3.3 | 3.53 | 3.32 | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 13.71 | 0.01 | 2.114 | 6.29 | 0.79 | 4.5 | 95.1 | 0.3 | -3.21 | 0.62 | 0.81 | 3.08 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.90 | 0.00 | 2.132 | 11.50 | 0.79 | 3.5 | 96.5 | 0.0 | 0.42 | 1.54 | 0.64 | 0.83 | 2.35 | 4625 | 582 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8CK0 | 16688 | 2023-08-09 | 2023-02-14 | 3.8 | 3.83 | 3.70 | 3.8 | 0.005 | 0.80 | 0.0 | 0.05 | 16.63 | 0.01 | 2.259 | 15.81 | 0.00 | 5.3 | 94.7 | 0.0 | 0.79 | 0.17 | 0.78 | 1.47 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 17.61 | 0.00 | 2.237 | 10.99 | 0.24 | 4.0 | 96.0 | 0.0 | 2.20 | 0.72 | 0.18 | 0.78 | 1.71 | 3762 | 478 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR7 | 34048 | 2023-08-09 | 2022-08-09 | 3.8 | 4.63 | 4.40 | 4.6 | 0.008 | 1.25 | 1.0 | 0.09 | 21.39 | 0.01 | 2.385 | 7.94 | 4.74 | 16.7 | 83.3 | 0.0 | -5.36 | 0.64 | 0.60 | 0.33 | 4.6 | 0.003 | 0.73 | 0.0 | 0.04 | 20.51 | 0.01 | 2.149 | 16.66 | 0.36 | 17.0 | 83.0 | 0.0 | -2.77 | 1.49 | 0.66 | 0.64 | 1.00 | 5102 | 330 | 7 | 118 | 0 | 0 | 0 | logfile |
✔ | 8DKX | 27493 | 2023-08-09 | 2022-07-06 | 3.0 | 3.53 | 3.00 | 3.4 | 0.005 | 0.75 | 1.0 | 0.05 | 13.28 | 0.00 | 2.099 | 8.39 | 0.62 | 5.5 | 94.5 | 0.0 | -3.42 | 0.62 | 0.84 | 4.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.64 | 0.00 | 2.169 | 7.12 | 2.28 | 5.1 | 94.9 | 0.0 | -0.23 | 0.91 | 0.56 | 0.84 | 3.75 | 4370 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QL0 | 14059 | 2023-08-09 | 2021-12-19 | 3.13 | 2.96 | 2.97 | 3.1 | 0.011 | 1.87 | 0.0 | 0.09 | 12.06 | 0.01 | 2.510 | 0.00 | 0.00 | 4.0 | 96.0 | 0.0 | -2.04 | 0.39 | 0.77 | 6.02 | 3.2 | 0.003 | 0.59 | 0.0 | 0.05 | 14.36 | 0.00 | 2.094 | 6.58 | 0.00 | 1.0 | 99.0 | 0.0 | -1.73 | 1.65 | 0.41 | 0.84 | 6.04 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 7FDi | 31544 | 2023-08-09 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 14.05 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 15.25 | 0.00 | 2.085 | 11.58 | 0.30 | 2.8 | 97.2 | 0.0 | 1.10 | 1.10 | 0.61 | 0.80 | 2.44 | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7FDG | 31542 | 2023-08-09 | 2021-07-16 | 3.69 | 4.43 | — | 4.3 | 0.007 | 0.85 | 0.0 | 0.05 | 15.84 | 0.01 | 2.061 | 23.62 | 0.29 | 7.4 | 92.6 | 0.0 | -3.38 | 0.59 | 0.78 | 1.13 | 4.3 | 0.003 | 0.83 | 0.0 | 0.05 | 17.92 | 0.00 | 2.040 | 19.40 | 0.87 | 5.1 | 94.9 | 0.0 | -0.38 | 0.82 | 0.58 | 0.75 | 1.07 | 6459 | 791 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8HBV | 34644 | 2023-08-09 | 2022-10-31 | 2.51 | 2.70 | 2.51 | 2.7 | 0.009 | 0.96 | 0.0 | 0.05 | 14.34 | 0.01 | 2.209 | 8.10 | 0.00 | 2.0 | 98.0 | 0.0 | 1.54 | 0.61 | 0.88 | 4.41 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 16.74 | 0.00 | 2.228 | 6.11 | 0.59 | 2.0 | 98.0 | 0.0 | 2.56 | 1.72 | 0.59 | 0.89 | 3.85 | 3279 | 414 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 8EXR | 28660 | 2023-08-09 | 2022-10-25 | 3.8 | 4.08 | 3.96 | 4.1 | 0.026 | 1.94 | 0.0 | 0.11 | 11.54 | 0.01 | 2.016 | 3.98 | 0.00 | 2.8 | 96.9 | 0.3 | -0.66 | 0.58 | 0.68 | 1.29 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 15.99 | 0.01 | 2.122 | 14.02 | 1.06 | 4.5 | 95.5 | 0.0 | -0.80 | 1.25 | 0.54 | 0.67 | 0.54 | 5111 | 590 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 8DKM | 27490 | 2023-08-09 | 2022-07-05 | 3.39 | 3.59 | 3.11 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 12.86 | 0.00 | 2.241 | 7.23 | 0.83 | 6.4 | 93.6 | 0.0 | -0.94 | 0.62 | 0.84 | 2.67 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 15.24 | 0.00 | 2.237 | 5.97 | 0.62 | 7.3 | 92.7 | 0.0 | -0.18 | 0.35 | 0.62 | 0.87 | 2.36 | 4383 | 553 | 3 | 0 | 1 | 0 | 0 | logfile |