Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VUW	43542	2024-02-15	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.52	0.0	0.04	16.49	0.00	2.153	8.86	1.43	3.3	96.7	0.0	-0.70	0.31	0.65	0.82	3.30	13055	1560	10	0	5	0	0	logfile
✔	8VK3	43299	2024-02-28	2024-01-08	3.21	3.09	—	3.0	0.003	0.72	0.0	0.04	14.00	0.00	1.591	6.88	0.05	2.2	97.8	0.0	1.48	0.87	0.86	3.39	3.0	0.005	0.67	0.0	0.04	15.59	0.00	2.072	8.57	1.16	2.5	97.5	0.0	1.46	0.96	0.90	0.90	3.32	148852	18672	20	0	12	0	0	logfile
✔	8VK4	43304	2024-02-28	2024-01-08	3.56	3.79	—	3.4	0.004	0.74	0.0	0.04	14.06	0.00	1.718	9.02	0.05	2.8	97.2	0.0	1.34	0.90	0.86	2.76	3.4	0.003	0.62	0.0	0.04	15.57	0.00	2.131	8.96	1.32	2.8	97.2	0.0	1.76	0.43	0.91	0.88	2.58	149304	18688	28	0	44	0	0	logfile
✔	8VJK	43284	2024-02-23	2024-01-07	2.92	3.34	3.08	3.0	0.003	0.69	0.0	0.04	14.13	0.00	1.955	5.07	0.05	1.9	98.1	0.0	2.22	0.89	0.89	3.55	3.0	0.007	0.62	0.0	0.04	15.40	0.00	2.060	6.04	0.80	2.1	97.9	0.0	1.90	0.35	0.91	0.93	3.60	143248	17920	12	0	28	0	0	logfile
✔	8VE0	43160	2024-02-13	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.002	0.54	0.0	0.05	14.87	0.00	2.195	7.99	1.71	1.5	98.5	0.0	1.32	0.36	0.74	0.81	3.46	3527	466	6	0	2	0	0	logfile
✔	8VDC	43146	2024-02-24	2023-12-14	3.5	3.36	3.50	3.3	0.006	0.75	0.0	0.05	13.43	0.01	2.377	1.34	0.00	2.1	97.9	0.0	-1.87	0.80	0.85	3.14	3.3	0.004	0.54	0.0	0.04	15.11	0.00	2.223	4.26	1.08	2.3	97.7	0.0	0.96	1.47	0.81	0.86	2.68	47064	5736	24	0	0	0	0	logfile
✔	8VD8	43145	2024-02-25	2023-12-14	3.2	2.93	3.17	3.1	0.007	0.81	0.0	0.05	13.73	0.01	2.181	0.80	0.00	1.9	98.1	0.0	-0.87	0.66	0.83	3.38	3.1	0.004	0.60	0.0	0.04	16.85	0.00	2.133	5.98	2.97	2.4	97.6	0.0	0.53	0.69	0.65	0.84	3.00	47880	5832	24	0	0	0	0	logfile
✔	8VDE	43147	2024-02-17	2023-12-14	3.4	3.79	3.62	3.7	0.006	0.86	0.0	0.05	13.48	0.01	2.235	1.81	0.09	3.4	96.6	0.0	-1.45	0.59	0.79	2.60	3.7	0.005	0.66	0.0	0.04	16.66	0.00	2.122	9.67	2.20	3.5	96.5	0.0	0.70	0.89	0.61	0.85	1.94	70177	8643	27	0	0	0	0	logfile
✔	8VC2	43130	2024-02-15	2023-12-13	3.98	4.39	3.99	4.4	0.006	0.84	0.0	0.04	14.09	0.01	2.353	2.91	0.31	2.4	97.6	0.0	-0.98	0.57	0.71	1.08	4.4	0.004	0.96	1.0	0.04	16.35	0.01	2.236	10.63	4.64	2.7	97.3	0.0	1.52	2.23	0.56	0.73	1.08	11796	1516	8	0	4	0	0	logfile
✔	8VC1	43129	2024-02-15	2023-12-13	2.85	3.23	2.92	3.2	0.012	1.46	0.0	0.06	17.03	0.01	2.196	4.03	0.30	2.1	97.9	0.0	-1.02	0.59	0.82	3.63	3.2	0.003	0.51	0.0	0.03	16.24	0.00	2.232	8.98	1.34	1.4	98.6	0.0	4.06	0.45	0.56	0.80	2.26	13128	1564	8	0	32	0	0	logfile
✔	8RFH	19121	2024-02-15	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.77	0.0	0.05	16.04	0.00	2.201	17.23	2.13	3.3	96.7	0.0	0.36	1.00	0.82	0.76	0.99	11802	1460	4	0	2	0	0	logfile
✔	8RED	19083	2024-02-20	2023-12-10	3.9	4.13	3.86	3.8	0.005	0.68	0.0	0.04	19.76	0.01	2.088	10.12	0.41	6.4	93.5	0.0	-0.58	0.80	0.75	1.60	3.8	0.004	0.64	0.0	0.04	19.70	0.00	1.920	11.17	3.29	6.2	93.8	0.0	0.03	1.19	0.88	0.84	1.31	28878	3617	10	105	3	0	0	logfile
✔	8XCR	38252	2024-02-13	2023-12-10	2.6	2.74	—	2.7	0.006	0.77	0.0	0.05	18.07	0.00	2.405	8.56	6.45	3.6	96.4	0.0	0.58	0.46	0.89	4.47	2.7	0.004	0.56	0.0	0.04	16.21	0.00	2.256	4.21	0.88	1.7	98.3	0.0	1.49	1.16	0.49	0.93	5.30	3360	418	2	0	2	21	0	logfile
✔	8XD2	38263	2024-02-13	2023-12-10	2.64	3.04	—	3.0	0.009	0.88	0.0	0.05	17.62	0.00	2.449	4.72	3.56	3.9	96.1	0.0	0.83	0.45	0.88	4.08	3.0	0.004	0.57	0.0	0.04	17.04	0.00	2.273	5.33	0.89	2.7	97.3	0.0	1.85	0.55	0.43	0.89	3.77	3305	416	2	0	2	9	0	logfile
✔	8REE	19084	2024-02-20	2023-12-10	3.8	4.28	4.01	4.1	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.004	0.80	0.0	0.04	19.80	0.00	1.996	17.32	3.25	7.3	92.6	0.1	-1.09	1.48	0.88	0.83	0.99	28605	3617	10	103	3	0	0	logfile
✔	8XCV	38256	2024-02-13	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.99	0.00	2.314	5.62	0.29	1.9	98.1	0.0	2.11	0.38	0.48	0.91	4.34	3310	415	2	0	1	7	0	logfile
✔	8XD6	38267	2024-02-13	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.015	1.12	1.0	0.04	16.59	0.01	0.945	8.37	1.46	1.7	98.3	0.0	1.45	0.41	0.48	0.93	4.61	3402	419	2	0	4	44	0	logfile
✔	8XCo	38249	2024-02-13	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.004	0.52	0.0	0.04	17.32	0.00	2.279	5.13	0.59	2.2	97.8	0.0	1.76	0.57	0.50	0.93	4.53	3335	416	2	0	1	14	0	logfile
✔	8REB	19081	2024-02-20	2023-12-10	3.4	3.95	3.51	4.1	0.005	0.71	0.0	0.04	19.20	0.01	2.006	10.84	0.38	6.7	93.3	0.0	-0.58	0.63	0.34	0.40	3.5	0.004	0.80	0.0	0.04	19.54	0.00	1.958	18.09	1.92	6.2	93.8	0.0	-0.55	5.23	0.88	0.83	1.09	28681	3638	10	101	3	0	0	logfile
✔	8XD4	38265	2024-02-13	2023-12-10	2.87	3.04	—	3.0	0.007	0.82	0.0	0.05	17.18	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.44	0.86	4.02	3.0	0.002	0.50	0.0	0.04	17.47	0.00	2.319	6.33	0.59	2.6	97.1	0.2	2.03	1.63	0.43	0.89	3.89	3342	418	2	0	2	11	0	logfile

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