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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VHA | 21201 | 2024-02-13 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 13.37 | 0.00 | 2.246 | 12.62 | 0.00 | 12.4 | 87.6 | 0.0 | -4.31 | 3.37 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 1oED | 1044 | 2024-02-13 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 224.94 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.005 | 1.06 | 0.0 | 0.05 | 16.10 | 0.01 | 2.206 | 23.77 | 2.08 | 2.6 | 97.4 | 0.0 | 1.81 | 2.72 | 0.59 | 0.38 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZ9 | 20528 | 2024-02-13 | 2019-07-31 | 3.65 | 3.90 | — | 3.9 | 0.009 | 1.21 | 0.0 | 0.06 | 12.97 | 0.01 | 2.205 | 3.30 | 0.00 | 6.9 | 93.1 | 0.0 | -3.88 | 0.65 | 0.67 | 2.19 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 15.24 | 0.00 | 2.198 | 7.10 | 3.73 | 4.0 | 96.0 | 0.0 | -0.09 | 1.14 | 0.68 | 0.71 | 0.55 | 7773 | 1196 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VVo | 32146 | 2024-02-13 | 2021-11-06 | 4.1 | 2.82 | 3.93 | 4.0 | 0.014 | 1.88 | 0.0 | 0.09 | 15.54 | 0.01 | 2.158 | 9.28 | 3.81 | 4.5 | 95.5 | 0.1 | -1.84 | 0.70 | 0.74 | — | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 13.90 | 0.00 | 2.108 | 12.73 | 0.00 | 3.8 | 96.2 | 0.0 | 0.24 | 0.64 | 0.69 | 0.69 | — | 7942 | 1059 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2024-02-13 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.88 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.079 | 6.11 | 24.0 | 0.43 | 24.10 | 0.05 | 1.656 | 300.95 | 53.33 | 52.7 | 4.0 | 43.3 | -10.74 | 2.56 | 0.43 | 0.58 | 3.10 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✘ | 7N6B | 24206 | 2024-02-13 | 2021-06-08 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5942 | 757 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2024-02-13 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.20 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.37 | 0.00 | 1.255 | 8.18 | 2.21 | 2.8 | 97.2 | 0.0 | -0.06 | 0.47 | 0.64 | 0.80 | 1.91 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2024-02-13 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.20 | 0.00 | 1.385 | 8.28 | 2.58 | 2.5 | 97.5 | 0.0 | 0.26 | 0.44 | 0.69 | 0.82 | 1.79 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-02-13 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 8EiR | 28162 | 2024-02-13 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.01 | 2.339 | 3.32 | 1.87 | 2.1 | 97.9 | 0.0 | -0.05 | 0.57 | 0.84 | 0.91 | 4.28 | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EK1 | 31165 | 2024-02-13 | 2021-04-03 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.75 | — | — | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53500 | 6720 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2024-02-13 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.012 | 2.01 | 0.0 | 0.08 | 11.31 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.007 | 1.19 | 0.0 | 0.05 | 10.55 | 0.01 | 2.168 | 17.65 | 0.00 | 23.0 | 76.9 | 0.1 | -4.03 | 1.19 | 0.82 | 0.76 | — | 7307 | 1393 | 16 | 0 | 23 | 0 | 0 | logfile |
✔ | 6XMF | 22257 | 2024-02-13 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 21.16 | 0.00 | 2.246 | 8.60 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 21.65 | 0.00 | 2.143 | 14.52 | 3.97 | 9.8 | 90.2 | 0.0 | -0.65 | 0.46 | 0.72 | 0.77 | 2.59 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 7D9T | 30620 | 2024-02-13 | 2020-10-14 | 4.1 | 4.18 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 11.03 | 0.00 | 2.230 | 6.74 | 0.00 | 3.9 | 96.1 | 0.0 | -1.91 | 0.84 | 0.81 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 11.36 | 0.00 | 2.145 | 7.66 | 0.00 | 3.1 | 96.9 | 0.0 | 1.11 | 0.44 | 0.85 | 0.81 | — | 7451 | 1079 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iL3 | 35526 | 2024-02-13 | 2023-03-01 | 3.86 | 4.17 | 3.88 | 3.9 | 0.009 | 1.39 | 0.0 | 0.08 | 18.38 | 0.01 | 2.362 | 6.55 | 8.75 | 10.6 | 89.4 | 0.0 | -5.16 | 0.80 | 0.71 | 1.53 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 17.96 | 0.00 | 2.160 | 12.13 | 4.29 | 7.1 | 92.9 | 0.0 | -2.23 | 1.37 | 0.81 | 0.72 | 1.74 | 5172 | 665 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2024-02-13 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EWi | 28646 | 2024-02-13 | 2022-10-23 | 3.5 | 2.81 | 3.63 | 2.1 | 0.003 | 0.53 | 0.0 | 0.04 | 12.21 | 0.00 | 2.153 | 14.61 | 5.25 | 5.7 | 94.2 | 0.1 | -0.22 | 0.68 | 0.66 | 0.83 | 1.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.47 | 0.00 | 2.124 | 16.75 | 3.78 | 5.9 | 94.0 | 0.1 | -0.13 | 0.46 | 0.68 | 0.65 | 0.66 | 55708 | 7100 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7T4K | 25678 | 2024-02-13 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 14.85 | 0.00 | 2.197 | 7.41 | 1.65 | 1.6 | 98.4 | 0.0 | 1.49 | 0.85 | 0.71 | 0.85 | 1.80 | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LN6 | 0925 | 2024-02-13 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 12.49 | 0.00 | 2.035 | 6.53 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | 3.0 | 0.005 | 0.61 | 0.0 | 0.05 | 15.84 | 0.00 | 2.025 | 6.66 | 1.97 | 2.5 | 97.5 | 0.0 | 0.12 | 1.32 | 0.66 | 0.84 | 3.35 | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LN9 | 0928 | 2024-02-13 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.89 | 0.00 | 1.273 | 10.11 | 4.06 | 4.7 | 95.3 | 0.0 | -0.48 | 0.51 | 0.62 | 0.76 | 1.24 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |