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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Z4Z | 14511 | 2024-02-13 | 2022-03-06 | 4.0 | 3.29 | 3.87 | 3.9 | 0.003 | 0.75 | 1.0 | 0.05 | 14.17 | 0.01 | 2.305 | 11.39 | 0.00 | 2.1 | 97.3 | 0.6 | -4.82 | 0.61 | 0.72 | — | 3.9 | 0.003 | 0.83 | 0.0 | 0.05 | 16.80 | 0.01 | 2.243 | 12.38 | 3.96 | 14.4 | 85.3 | 0.3 | -1.76 | 0.73 | 0.58 | 0.73 | — | 4817 | 673 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TJZ | 25947 | 2024-02-18 | 2022-01-17 | 4.4 | 7.00 | 4.54 | 4.2 | 0.019 | 2.21 | 0.0 | 0.00 | 6.67 | 0.01 | 2.384 | 0.19 | 0.00 | 4.2 | 94.2 | 1.6 | -0.41 | 0.58 | 0.63 | — | 4.2 | 0.017 | 1.19 | 0.0 | 0.00 | 6.51 | 0.01 | 2.047 | 16.64 | 0.00 | 13.2 | 86.4 | 0.3 | -1.19 | 0.80 | 0.82 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZBG | 6911 | 2024-02-18 | 2018-02-11 | 4.36 | 4.83 | — | 4.5 | 0.005 | 0.70 | 0.0 | 0.04 | 13.89 | 0.00 | 2.258 | 7.73 | 4.79 | 7.0 | 92.7 | 0.3 | -2.22 | 0.69 | 0.81 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.04 | 12.60 | 0.00 | 2.195 | 14.30 | 0.00 | 5.2 | 94.8 | 0.0 | 1.46 | 0.97 | 0.70 | 0.83 | — | 21260 | 2680 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2024-02-14 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.76 | 0.0 | 0.05 | 13.33 | 0.00 | 2.167 | 26.82 | 0.00 | 4.3 | 95.7 | 0.0 | -0.87 | 2.00 | 0.75 | 0.57 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CYH | 30500 | 2024-02-13 | 2020-09-03 | 3.9 | 4.13 | — | 4.1 | 0.011 | 1.18 | 0.0 | 0.06 | 9.76 | 0.01 | 2.087 | 28.64 | 0.87 | 9.8 | 89.7 | 0.5 | -4.10 | 0.51 | 0.61 | 2.53 | 4.1 | 0.004 | 0.87 | 0.0 | 0.05 | 14.05 | 0.00 | 2.150 | 14.24 | 4.94 | 8.2 | 91.4 | 0.5 | -1.53 | 1.05 | 0.57 | 0.75 | 1.99 | 3241 | 423 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J99 | 9783 | 2024-02-18 | 2019-01-22 | 4.1 | 4.24 | — | 4.2 | 0.008 | 0.98 | 1.0 | 0.05 | 27.10 | 0.01 | 2.204 | 7.71 | 0.00 | 8.0 | 92.0 | 0.0 | -2.88 | 0.65 | 0.52 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 27.19 | 0.00 | 2.129 | 18.26 | 0.00 | 4.8 | 95.2 | 0.0 | -0.60 | 2.15 | 0.77 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✔ | 7W53 | 32313 | 2024-02-17 | 2021-11-29 | 3.2 | 2.94 | — | 3.0 | 0.007 | 0.86 | 1.0 | 0.05 | 12.62 | 0.00 | 1.769 | 6.17 | 0.63 | 3.9 | 96.1 | 0.0 | -0.67 | 0.58 | 0.76 | 3.10 | 3.0 | 0.004 | 0.59 | 0.0 | 0.04 | 15.45 | 0.00 | 1.876 | 9.06 | 1.48 | 3.6 | 96.4 | 0.0 | 0.77 | 0.82 | 0.57 | 0.78 | 2.47 | 17354 | 1109 | 6 | 0 | 0 | 0 | 8644 | logfile |
✔ | 8A03 | 15046 | 2024-02-13 | 2022-05-26 | 3.2 | 3.30 | 3.21 | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 14.18 | 0.00 | 2.399 | 3.41 | 0.00 | 2.4 | 97.6 | 0.0 | 0.63 | 0.51 | 0.84 | 2.31 | 3.3 | 0.004 | 0.53 | 0.0 | 0.05 | 16.70 | 0.00 | 2.228 | 4.13 | 3.81 | 3.1 | 96.9 | 0.0 | -0.26 | 0.39 | 0.50 | 0.87 | 2.61 | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LTo | 0976 | 2024-02-17 | 2020-01-23 | 3.1 | 3.36 | 2.98 | 3.4 | 0.007 | 1.00 | 0.0 | 0.05 | 14.55 | 0.01 | 2.318 | 2.17 | 0.00 | 7.6 | 92.4 | 0.0 | -4.14 | 0.67 | 0.81 | 2.32 | 3.5 | 0.002 | 0.61 | 0.0 | 0.04 | 16.23 | 0.00 | 2.224 | 4.82 | 1.86 | 6.7 | 93.3 | 0.0 | 0.62 | 1.59 | 0.65 | 0.80 | 2.14 | 17255 | 2156 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MGV | 9112 | 2024-02-14 | 2018-09-15 | 3.1 | 3.21 | 3.10 | 3.2 | 0.018 | 1.44 | 0.0 | 0.08 | 9.73 | 0.01 | 2.082 | 2.85 | 0.00 | 3.4 | 96.5 | 0.2 | -0.38 | 0.70 | 0.83 | 4.59 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.04 | 0.00 | 1.985 | 6.63 | 1.04 | 3.5 | 96.5 | 0.0 | 1.61 | 2.11 | 0.67 | 0.84 | 3.05 | 10150 | 1268 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVX | 10016 | 2024-02-14 | 2019-06-03 | 3.61 | 3.75 | 3.53 | 3.8 | 0.006 | 0.99 | 0.0 | 0.05 | 14.07 | 0.01 | 2.261 | 5.00 | 0.29 | 8.0 | 92.0 | 0.0 | -5.46 | 0.65 | 0.80 | 1.54 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.47 | 0.00 | 2.177 | 11.17 | 2.45 | 4.9 | 95.1 | 0.0 | -0.99 | 0.48 | 0.64 | 0.80 | 0.91 | 9627 | 1290 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SJ4 | 25153 | 2024-02-13 | 2021-10-15 | 2.86 | 3.15 | — | 3.2 | 0.002 | 0.43 | 0.0 | 0.04 | 9.56 | 0.00 | 2.278 | 3.47 | 0.93 | 1.3 | 98.7 | 0.0 | 0.95 | 0.62 | 0.72 | 3.73 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 14.69 | 0.00 | 2.249 | 6.04 | 2.78 | 2.3 | 97.7 | 0.0 | 1.55 | 0.62 | 0.60 | 0.71 | 2.67 | 3909 | 481 | 4 | 0 | 0 | 24 | 0 | logfile |
✔ | 7TJY | 25946 | 2024-02-18 | 2022-01-17 | 3.8 | 4.84 | 3.78 | 3.6 | 0.020 | 2.29 | 0.0 | 0.00 | 6.75 | 0.01 | 2.333 | 0.12 | 0.00 | 4.3 | 94.3 | 1.5 | -0.54 | 0.59 | 0.68 | — | 3.6 | 0.004 | 0.79 | 0.0 | 0.00 | 4.84 | 0.00 | 2.161 | 3.93 | 0.00 | 9.8 | 90.0 | 0.3 | 0.68 | 1.48 | 0.82 | 0.86 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A01 | 15044 | 2024-02-13 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | 3.2 | 0.002 | 0.47 | 0.0 | 0.05 | 17.00 | 0.00 | 2.265 | 4.93 | 2.22 | 2.5 | 97.5 | 0.0 | -0.45 | 0.25 | 0.47 | 0.87 | 2.60 | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UAN | 20708 | 2024-02-13 | 2019-09-11 | 3.9 | 4.03 | — | 3.9 | 0.007 | 0.95 | 0.0 | 0.06 | 16.09 | 0.01 | 2.256 | 7.56 | 1.03 | 8.1 | 91.9 | 0.0 | -5.36 | 0.76 | 0.80 | 1.99 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 17.36 | 0.00 | 2.228 | 13.78 | 3.61 | 5.1 | 94.9 | 0.0 | -1.64 | 1.22 | 0.75 | 0.78 | 1.57 | 7685 | 1007 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JBH | 9790 | 2024-02-14 | 2019-01-25 | 3.94 | 4.06 | — | 4.0 | 0.007 | 1.23 | 0.0 | 0.07 | 12.50 | 0.03 | 2.260 | 6.09 | 0.53 | 14.3 | 85.5 | 0.2 | -5.84 | 0.68 | 0.81 | 2.48 | 4.0 | 0.003 | 0.93 | 0.0 | 0.05 | 16.18 | 0.00 | 2.205 | 14.02 | 3.94 | 14.6 | 85.4 | 0.0 | -2.29 | 0.93 | 0.69 | 0.81 | 1.53 | 8592 | 1062 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TK0 | 25948 | 2024-02-18 | 2022-01-17 | 4.4 | 6.63 | 4.39 | 4.1 | 0.019 | 2.21 | 0.0 | 0.00 | 6.55 | 0.01 | 2.394 | 0.08 | 0.00 | 3.9 | 94.5 | 1.5 | -0.40 | 0.58 | 0.62 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.00 | 5.24 | 0.00 | 2.105 | 7.94 | 0.00 | 8.9 | 90.9 | 0.3 | -0.45 | 0.81 | 0.83 | 0.81 | — | 20220 | 5054 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A04 | 15047 | 2024-02-13 | 2022-05-26 | 3.2 | 3.28 | 3.22 | 3.3 | 0.004 | 0.60 | 0.0 | 0.05 | 14.53 | 0.00 | 2.113 | 4.31 | 0.00 | 1.5 | 98.5 | 0.0 | -0.52 | 0.52 | 0.85 | 3.07 | 3.3 | 0.005 | 0.59 | 0.0 | 0.05 | 16.63 | 0.00 | 2.181 | 3.77 | 2.70 | 3.7 | 96.3 | 0.0 | -0.48 | 0.29 | 0.50 | 0.86 | 3.00 | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5UZ7 | 8623 | 2024-02-13 | 2017-02-24 | 4.1 | 4.03 | — | 4.0 | 0.008 | 1.17 | 0.0 | 0.06 | 11.04 | 0.01 | 2.267 | 7.82 | 0.37 | 4.4 | 95.6 | 0.0 | -2.30 | 0.64 | 0.75 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 13.71 | 0.00 | 2.205 | 15.25 | 0.00 | 5.4 | 94.6 | 0.0 | -0.43 | 1.39 | 0.67 | 0.78 | — | 7643 | 974 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiL | 31602 | 2024-02-13 | 2021-07-31 | 3.0 | 2.84 | — | 3.6 | 0.008 | 1.05 | 2.0 | 0.06 | 18.46 | 0.01 | 2.213 | 19.35 | 8.76 | 7.7 | 91.1 | 1.2 | -1.82 | 0.71 | 0.75 | 1.53 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 18.65 | 0.00 | 2.212 | 10.75 | 6.22 | 7.1 | 92.7 | 0.2 | 1.41 | 1.54 | 0.71 | 0.76 | 0.78 | 3993 | 504 | 1 | 0 | 0 | 0 | 0 | logfile |