Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RK9	24495	2021-09-19	2021-07-22	2.32	2.78	—	2.8	0.008	0.69	0.0	0.05	15.89	0.01	2.150	7.34	0.69	2.9	97.1	0.0	-0.56	0.69	0.89	5.05	2.8	0.009	0.72	0.0	0.05	16.57	0.01	2.100	7.76	1.94	3.2	96.8	0.0	-0.50	0.28	0.59	0.86	5.07	247500	31380	60	0	0	0	0	logfile
✔	7RK8	24494	2021-09-19	2021-07-22	2.27	2.34	—	2.3	0.004	0.61	0.0	0.05	14.03	0.00	2.161	3.94	0.00	1.9	98.1	0.0	-0.56	0.76	0.89	5.98	2.3	0.003	0.58	0.0	0.04	15.77	0.00	2.063	3.62	0.86	2.3	97.7	0.0	-0.64	0.33	0.72	0.88	5.74	246720	31020	60	0	0	0	0	logfile
✘	7RH7	24457	2021-09-06	2021-07-16	3.0	3.06	—	3.2	0.007	1.32	0.0	0.25	14.59	0.01	1.182	16.11	0.00	7.7	92.1	0.2	-0.61	0.55	0.70	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93330	6072	44	0	68	0	44390	logfile
✘	7RH6	24456	2021-09-06	2021-07-16	3.5	3.79	—	3.7	0.008	1.39	9.0	0.25	15.10	0.01	1.060	15.81	1.14	7.5	92.2	0.3	-0.59	0.66	0.72	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89469	5901	42	0	64	0	41917	logfile
✘	7RH5	24455	2021-09-06	2021-07-16	3.0	3.17	—	3.2	0.008	1.35	1.0	0.25	14.70	0.01	1.180	16.59	0.11	7.7	92.0	0.2	-0.68	0.70	0.81	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48948	6072	43	0	68	0	0	logfile
✔	7P54	13194	2021-09-02	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	6.90	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.04	16.10	0.00	2.222	6.98	0.45	2.7	97.3	0.0	4.52	1.89	0.56	0.78	1.01	6248	794	8	0	12	0	0	logfile
✔	7P5C	13198	2021-09-02	2021-07-14	3.2	3.07	3.09	3.3	0.004	0.58	0.0	0.04	14.51	0.00	2.220	6.92	0.00	2.1	97.9	0.0	2.41	0.57	0.82	2.09	3.3	0.004	0.58	0.0	0.04	15.98	0.00	2.241	6.27	0.30	1.7	98.3	0.0	4.05	0.34	0.60	0.84	1.32	6222	784	6	0	8	0	0	logfile
✔	7P5M	13201	2021-09-02	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.80	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.019	1.91	1.0	0.04	17.38	0.01	2.061	15.18	0.31	1.0	99.0	0.0	3.94	0.46	0.52	0.77	1.01	6204	788	8	0	12	0	0	logfile
✔	7P5J	13200	2021-09-02	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.71	0.0	0.04	15.91	0.01	2.264	8.49	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.010	1.31	0.0	0.04	18.42	0.01	2.050	12.06	0.30	2.2	97.8	0.0	3.19	0.48	0.52	0.77	—	6250	798	6	0	8	0	0	logfile
✔	7RB8	24399	2021-09-03	2021-07-05	3.63	3.84	3.65	3.8	0.003	0.67	0.0	0.05	14.20	0.00	1.921	8.73	0.07	5.4	94.6	0.0	-0.17	0.59	0.86	2.65	3.8	0.003	0.64	0.0	0.04	15.57	0.00	2.114	7.99	0.00	5.0	95.0	0.0	0.58	0.51	0.60	0.87	2.17	14226	1786	8	0	8	0	0	logfile
✔	7RB0	24391	2021-09-05	2021-07-05	2.98	3.22	—	3.2	0.009	0.76	0.0	0.05	13.45	0.00	2.115	12.75	0.00	4.9	95.1	0.0	-1.42	0.72	0.82	3.78	3.2	0.005	0.68	0.0	0.05	16.38	0.00	2.137	11.86	1.04	4.7	95.3	0.0	-0.33	0.50	0.76	0.85	3.21	16350	2082	6	0	0	0	0	logfile
✘	7RB9	24400	2021-09-03	2021-07-05	3.76	4.01	3.83	3.9	0.002	0.57	0.0	0.04	14.64	0.00	2.228	9.24	0.00	3.2	96.8	0.0	0.60	0.59	0.85	1.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14193	1786	7	0	6	0	0	logfile
✔	7RB2	24392	2021-09-05	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.65	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.004	0.55	0.0	0.04	15.62	0.00	2.186	6.18	0.11	2.4	97.6	0.0	0.30	3.66	0.77	0.86	3.84	16386	2082	6	0	0	0	0	logfile
✔	7P0Z	13153	2021-09-03	2021-07-01	2.43	2.02	2.18	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.21	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.47	0.0	0.03	18.25	0.00	2.223	4.02	1.34	1.2	98.8	0.0	5.81	0.57	0.82	0.86	1.74	12873	1652	7	0	0	0	0	logfile
✔	7P14	13155	2021-09-02	2021-07-01	3.66	3.82	3.50	3.8	0.006	0.80	0.0	0.04	16.89	0.00	2.295	7.18	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.011	1.29	0.0	0.04	16.62	0.00	2.178	12.54	0.25	3.8	96.2	0.0	2.73	0.43	0.62	0.79	1.57	3796	454	3	0	3	0	0	logfile
✔	7P13	13154	2021-09-03	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.6	0.003	0.48	0.0	0.03	17.14	0.00	2.005	14.47	1.59	2.4	97.6	0.0	5.03	0.51	0.83	0.87	3.65	13727	1743	7	0	0	0	154	logfile
✔	7P16	13157	2021-09-02	2021-07-01	4.3	4.40	3.53	4.3	0.003	0.63	0.0	0.04	15.19	0.00	2.178	7.29	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.004	0.68	0.0	0.04	14.57	0.00	2.161	11.41	0.00	4.1	95.9	0.0	1.03	1.47	0.65	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7P0M	13148	2021-09-04	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.40	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.003	0.51	0.0	0.04	16.47	0.00	2.016	9.38	2.29	1.8	98.2	0.0	1.61	0.26	0.96	0.89	2.23	25185	3185	19	0	45	0	0	logfile
✔	7RA8	24347	2021-09-04	2021-06-30	3.1	3.60	3.30	3.5	0.014	1.50	0.0	0.10	10.66	0.01	2.367	0.69	0.60	1.8	97.9	0.3	-0.04	0.72	0.74	3.47	3.5	0.005	0.64	0.0	0.05	13.10	0.00	2.305	4.69	0.30	2.2	97.7	0.1	0.08	1.62	0.73	0.79	2.96	24036	3405	24	0	54	0	0	logfile
✔	7P09	13146	2021-09-04	2021-06-29	2.7	3.13	—	3.1	0.003	0.52	0.0	0.04	13.21	0.00	1.839	6.50	0.00	1.4	98.6	0.0	0.76	0.77	0.85	3.34	3.1	0.003	0.56	0.0	0.04	16.00	0.00	1.933	8.37	1.40	1.7	98.3	0.0	0.85	0.45	0.78	0.87	2.74	25091	3185	13	0	21	0	0	logfile

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