Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XJH	33227	2022-05-12	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.01	0.00	2.218	7.48	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.007	0.66	0.0	0.04	15.48	0.00	2.095	7.35	0.49	2.8	97.2	0.0	0.86	0.38	0.66	0.81	2.18	7832	1027	5	0	1	0	0	logfile
✘	7XJi	33228	2022-05-12	2022-04-18	3.9	3.60	3.70	3.9	0.004	0.61	0.0	0.04	14.07	0.00	2.165	9.09	0.00	4.3	95.7	0.0	-0.25	0.61	0.78	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7851	1027	6	0	1	0	0	logfile
✔	7UPi	26667	2022-05-12	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.62	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.004	0.58	0.0	0.04	11.05	0.00	1.939	4.35	0.11	2.6	97.4	0.0	-0.29	2.21	0.91	0.90	4.11	7775	972	5	0	5	0	0	logfile
✔	7UML	26603	2022-05-13	2022-04-07	3.5	3.77	3.85	3.7	0.003	0.58	0.0	0.04	15.49	0.00	2.114	7.79	0.00	2.0	97.4	0.6	-2.75	0.66	0.69	2.52	3.7	0.009	1.12	0.0	0.04	17.55	0.01	1.978	11.79	0.58	10.4	89.1	0.5	-1.95	0.78	0.65	0.72	2.42	13227	812	7	13	0	0	6477	logfile
✔	7XD1	33132	2022-05-13	2022-03-26	3.2	2.74	3.19	3.1	0.009	0.87	0.0	0.05	26.97	0.01	2.339	2.86	1.59	1.3	98.7	0.0	-5.83	0.76	0.83	4.00	3.1	0.004	0.61	0.0	0.04	28.48	0.00	2.032	6.87	0.48	2.3	97.7	0.0	1.55	0.48	0.78	0.84	2.74	12048	760	10	294	0	0	0	logfile
✔	7XD0	33131	2022-05-14	2022-03-26	3.48	2.99	—	2.9	0.003	0.57	0.0	0.04	27.19	0.00	2.132	10.17	0.13	2.9	97.1	0.0	1.23	0.82	0.81	1.82	2.9	0.006	0.68	0.0	0.04	28.43	0.00	2.154	11.37	0.65	4.5	95.5	0.0	1.36	0.30	0.83	0.83	1.44	13222	915	12	292	0	0	0	logfile
✘	7XCT	33127	2022-05-15	2022-03-25	2.72	3.02	—	3.0	0.012	1.10	0.0	0.06	22.70	0.01	2.220	3.90	0.59	5.3	94.3	0.4	-5.11	0.73	0.82	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18633	1575	16	290	2	0	0	logfile
✔	7XCR	33126	2022-05-14	2022-03-25	2.57	2.86	—	2.8	0.007	0.96	0.0	0.05	23.88	0.01	2.228	4.19	0.90	4.3	95.6	0.2	-4.82	0.76	0.83	4.14	2.8	0.005	0.69	0.0	0.04	26.33	0.00	2.108	8.73	2.50	3.9	95.9	0.2	0.80	0.50	0.74	0.83	3.42	15400	1174	13	292	1	0	0	logfile
✔	7XC6	33113	2022-05-14	2022-03-23	2.79	2.93	2.78	3.0	0.006	0.72	0.0	0.05	17.67	0.00	2.003	7.23	7.75	7.1	92.9	0.0	-2.40	0.63	0.67	0.82	2.9	0.005	0.79	0.0	0.04	18.24	0.00	2.092	8.32	2.05	6.4	93.6	0.0	-0.08	0.81	0.75	0.91	3.41	16176	2026	5	0	0	0	0	logfile
✔	7UDB	26455	2022-05-13	2022-03-18	3.5	3.64	3.39	3.6	0.003	0.50	0.0	0.04	15.55	0.00	2.182	6.46	0.14	2.8	97.2	0.0	1.74	0.77	0.82	1.51	3.6	0.003	0.54	0.0	0.04	16.78	0.00	2.237	7.08	0.00	2.8	97.2	0.0	1.99	0.35	0.78	0.84	1.52	6472	807	3	0	0	0	0	logfile
✔	7UDC	26456	2022-05-13	2022-03-18	3.7	3.83	3.54	3.8	0.003	0.54	0.0	0.04	14.90	0.00	2.200	7.93	0.28	3.3	96.7	0.0	1.79	0.71	0.80	1.93	3.8	0.003	0.54	0.0	0.04	16.94	0.00	2.094	7.16	0.14	3.4	96.6	0.0	2.22	0.36	0.74	0.82	1.66	6425	806	3	0	0	0	0	logfile
✔	7UB5	26435	2022-05-15	2022-03-14	3.35	3.64	3.34	3.5	0.003	0.63	0.0	0.05	13.14	0.01	2.287	3.70	0.00	3.5	96.5	0.0	-0.85	0.85	0.87	3.11	3.4	0.007	0.61	0.0	0.05	14.15	0.00	2.176	5.93	0.04	4.2	95.8	0.0	-0.22	0.31	0.86	0.88	2.97	24923	3104	16	0	47	0	0	logfile
✔	7UB6	26436	2022-05-15	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.64	0.0	0.05	13.00	0.01	2.229	3.41	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.006	0.58	0.0	0.04	13.93	0.00	2.104	5.60	0.04	4.1	95.9	0.0	0.06	0.26	0.85	0.87	3.02	24762	3105	10	0	36	0	0	logfile
✔	7UB0	26433	2022-05-15	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7UAQ	26430	2022-05-12	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.16	2.0	0.07	12.64	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.005	0.84	0.0	0.05	14.98	0.00	2.126	20.16	1.08	10.3	89.7	0.0	-2.17	1.27	0.58	0.79	2.01	4362	533	8	0	10	0	0	logfile
✔	7UAP	26429	2022-05-16	2022-03-13	2.8	2.98	2.85	3.0	0.007	1.25	12.0	0.07	13.61	0.01	2.041	19.94	0.29	7.1	92.4	0.6	-2.28	0.64	0.65	1.45	3.0	0.006	0.95	1.0	0.06	16.13	0.01	1.872	16.88	2.63	7.3	92.5	0.3	-1.65	1.90	0.67	0.77	2.02	31657	3957	27	0	59	0	0	logfile
✔	7Z6H	14527	2022-05-14	2022-03-11	3.59	2.39	3.80	2.2	0.003	0.62	0.0	0.04	19.70	0.01	2.045	8.12	0.68	6.4	93.4	0.2	-0.27	0.74	0.70	1.41	2.2	0.004	0.63	0.0	0.04	19.76	0.01	2.047	8.41	0.59	7.2	92.6	0.2	-0.23	0.91	0.75	0.71	1.45	20629	2513	15	32	5	0	0	logfile
✔	7X7N	33042	2022-05-15	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.19	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	6.0	0.05	14.25	0.00	2.058	13.88	0.00	9.5	90.5	0.0	-2.57	0.77	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	7X6L	33023	2022-05-14	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.69	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.2	0.004	0.85	0.0	0.05	13.89	0.01	2.048	19.43	0.42	4.2	95.6	0.1	-1.53	1.02	0.67	0.62	1.07	21486	2781	12	0	0	0	0	logfile
✔	7X6o	33024	2022-05-14	2022-03-07	3.5	2.65	—	3.8	0.002	0.48	0.0	0.04	8.09	0.00	2.283	3.29	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.008	1.03	1.0	0.05	12.91	0.01	2.072	18.35	0.50	4.8	95.2	0.0	-1.04	1.58	0.64	0.59	1.03	21609	2787	12	0	0	0	0	logfile

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