Table showing results for December 2020

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A91	11681	2020-12-06	2020-09-01	3.6	3.74	3.57	3.7	0.006	0.77	0.0	0.05	15.20	0.01	2.194	3.25	0.81	4.9	95.1	0.0	-2.81	0.75	0.82	2.55	3.7	0.002	0.55	0.0	0.04	14.82	0.00	2.254	5.62	0.00	2.5	97.5	0.0	-0.08	2.23	0.74	0.81	2.33	6915	839	5	0	10	0	0	logfile
✔	7JYi	22526	2020-12-06	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.04	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.003	0.64	0.0	0.04	13.40	0.00	2.115	9.10	0.00	7.9	92.0	0.1	-1.78	1.31	0.42	0.83	2.31	8807	1152	4	0	0	0	0	logfile
✔	7A5R	11648	2020-12-06	2020-08-21	3.7	3.90	3.68	3.8	0.004	0.83	0.0	0.05	13.96	0.01	2.218	3.82	0.67	7.6	92.3	0.2	-1.97	0.73	0.78	2.27	3.8	0.004	0.73	0.0	0.04	13.12	0.00	2.265	5.59	0.17	4.8	95.2	0.0	-1.14	2.29	0.75	0.79	3.10	10608	1358	8	0	4	0	0	logfile
✔	7CTT	30469	2020-12-06	2020-08-20	3.2	3.41	—	3.4	0.009	0.51	0.0	0.04	12.55	0.00	2.123	10.28	0.45	4.7	95.3	0.0	-2.80	0.71	0.76	2.65	3.4	0.003	0.55	0.0	0.04	12.65	0.00	2.170	11.15	0.00	4.2	95.8	0.0	-0.83	0.42	0.71	0.76	3.13	8912	1031	7	34	4	0	0	logfile
✔	7JPP	22418	2020-12-07	2020-08-09	3.7	3.83	—	3.8	0.007	1.18	0.0	0.06	15.25	0.01	2.061	3.32	0.00	1.6	98.4	0.0	-1.90	0.72	0.78	2.10	3.8	0.003	0.54	0.0	0.04	15.33	0.00	2.040	6.00	0.00	2.0	98.0	0.0	0.79	2.23	0.74	0.79	1.69	14872	1816	7	0	4	0	0	logfile
✔	7JPQ	22419	2020-12-07	2020-08-09	3.5	3.56	—	3.5	0.008	1.14	0.0	0.06	14.27	0.01	2.088	2.16	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.003	0.52	0.0	0.04	14.76	0.00	2.045	4.07	0.00	2.9	97.1	0.0	0.66	0.59	0.73	0.83	1.80	13863	1691	6	0	4	0	0	logfile
✔	7Jo9	22408	2020-12-07	2020-08-06	3.3	3.00	—	3.2	0.008	0.74	0.0	0.04	26.00	0.01	2.222	4.77	0.41	5.1	94.9	0.0	0.34	0.79	0.82	1.58	3.2	0.004	0.59	0.0	0.04	25.97	0.00	2.224	4.91	0.00	2.7	97.3	0.0	1.79	0.63	0.80	0.82	2.22	14994	1125	11	290	1	0	0	logfile
✔	7JoA	22409	2020-12-07	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	26.00	0.01	2.206	6.07	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.003	0.61	0.0	0.04	25.86	0.00	2.263	6.54	0.00	1.7	98.3	0.0	1.63	4.79	0.80	0.83	2.14	14994	1125	11	290	1	0	0	logfile
✔	7JK6	22363	2020-12-07	2020-07-27	4.0	4.53	3.98	4.0	0.008	1.27	0.0	0.07	14.68	0.01	1.967	5.90	0.24	4.4	95.6	0.0	-2.89	0.87	0.78	—	4.0	0.003	0.67	0.0	0.04	13.93	0.00	1.994	10.79	0.00	2.8	97.2	0.0	1.16	1.21	0.88	0.79	—	15161	1887	9	0	6	0	0	logfile
✔	7JGC	22321	2020-12-07	2020-07-18	3.4	2.25	3.47	3.6	0.010	1.41	0.0	0.43	14.83	0.01	1.879	7.22	0.15	2.4	97.6	0.0	-2.65	0.58	0.68	3.40	3.6	0.004	1.32	0.0	0.15	13.96	0.00	2.011	8.93	0.00	4.2	95.8	0.0	0.58	0.63	0.58	0.68	2.51	15017	1017	19	0	7	0	7496	logfile
✔	6ZS5	11388	2020-12-06	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.67	0.0	0.05	15.00	0.00	2.241	8.30	0.00	4.3	95.7	0.0	-1.69	1.37	0.66	0.79	2.74	2036	257	4	0	7	0	0	logfile
✔	6XRA	22293	2020-12-06	2020-07-11	3.0	3.29	—	3.3	0.012	1.88	18.0	0.11	16.52	0.01	2.189	4.66	2.61	5.6	94.4	0.0	-2.60	0.69	0.72	2.23	3.3	0.004	0.70	0.0	0.05	15.16	0.00	2.199	10.87	0.00	4.5	95.5	0.0	0.34	1.03	0.69	0.73	1.73	8808	1044	21	0	57	0	0	logfile
✔	6XQo	22291	2020-12-06	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.44	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.004	0.65	0.0	0.04	14.00	0.00	2.170	9.92	0.00	2.4	97.6	0.0	0.54	0.68	0.77	0.76	1.74	4301	560	4	0	4	0	0	logfile
✔	6XQN	22290	2020-12-06	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.69	1.45	3.7	0.003	0.59	0.0	0.04	13.60	0.00	2.184	6.41	0.00	1.6	98.4	0.0	3.52	1.38	0.68	0.73	1.34	9433	1290	10	0	1	0	0	logfile
✔	6XPE	22286	2020-12-06	2020-07-08	4.1	4.23	—	4.2	0.006	0.82	0.0	0.04	14.30	0.00	1.492	20.00	2.08	10.6	88.1	1.3	-5.36	0.60	0.84	—	4.2	0.003	0.67	0.0	0.04	13.51	0.00	2.000	10.69	0.00	5.1	94.9	0.0	0.28	2.76	0.61	0.83	—	4292	554	4	0	8	0	0	logfile
✔	6XPD	22285	2020-12-06	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.68	0.20	9.4	90.6	0.0	-3.83	0.60	0.84	1.65	3.7	0.004	0.72	0.0	0.04	13.21	0.00	2.047	9.83	0.00	5.4	94.6	0.0	1.45	1.43	0.59	0.82	2.11	4622	606	4	0	4	0	0	logfile
✔	6ZoJ	11320	2020-12-07	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.34	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.006	0.68	0.0	0.04	15.01	0.01	1.199	5.28	0.00	3.6	96.4	0.0	0.32	2.45	0.81	0.86	3.55	75783	4914	45	1704	169	0	0	logfile
✔	7CH1	30368	2020-12-06	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.39	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.002	0.57	0.0	0.04	12.75	0.00	2.254	3.74	0.00	3.3	96.7	0.0	1.89	1.22	0.68	0.86	2.99	9948	1280	6	0	6	76	0	logfile
✔	6ZLW	11276	2020-12-07	2020-07-01	2.6	2.76	—	2.7	0.008	1.09	0.0	0.06	16.44	0.01	1.859	3.79	0.48	3.7	96.1	0.2	-3.57	0.78	0.82	3.72	2.7	0.005	0.73	0.0	0.04	15.77	0.01	2.002	7.65	0.05	4.3	95.6	0.2	-0.47	1.16	0.78	0.82	3.73	74568	4887	39	1665	3	0	0	logfile
✘	7CFM	30344	2020-12-06	2020-06-27	3.0	3.21	—	3.2	0.006	0.95	0.0	0.06	10.86	0.01	1.218	8.25	0.24	3.0	97.0	0.0	-2.23	0.61	0.78	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8081	1027	5	0	4	1	0	logfile

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