Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A4M	11638	2021-05-07	2020-08-20	1.22	1.13	1.29	1.2	0.010	1.37	0.0	0.09	13.82	0.01	0.001	2.43	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	6i5A	4413	2021-05-03	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.57	0.0	0.04	16.02	0.00	2.335	4.19	2.22	2.0	98.0	0.0	2.12	1.23	0.29	0.87	4.33	1206	153	1	0	0	0	0	logfile
✘	5MM2	3528	2021-05-03	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.49	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	6Z9F	11122	2021-05-04	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.75	48.0	0.10	15.49	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.62	0.0	0.04	15.13	0.01	2.154	5.53	3.05	1.8	98.2	0.0	4.99	0.85	0.82	0.83	8.66	41020	4152	72	0	32	4172	0	logfile
✔	7A5V	11657	2021-05-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.54	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.7	0.005	0.83	0.0	0.05	14.30	0.01	0.000	5.73	0.43	1.2	98.8	0.0	1.51	0.43	0.68	0.84	6.61	21155	2275	30	0	85	1015	0	logfile
✔	6MST	9232	2021-05-03	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.007	0.62	0.0	0.04	15.73	0.00	2.200	7.36	0.66	3.0	97.0	0.0	-3.51	1.22	0.68	0.90	7.12	5172	648	12	0	0	0	0	logfile
✔	6R4R	4727	2021-05-03	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.83	0.0	0.05	17.25	0.01	2.106	16.34	1.36	8.6	91.4	0.0	-4.86	4.01	0.31	0.68	4.00	4312	539	7	0	0	0	0	logfile
✘	7EFD	31084	2021-05-04	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	7EFC	31083	2021-05-04	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	6Y1A	10669	2021-05-03	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.003	0.66	0.0	0.04	11.03	0.00	2.095	10.42	0.00	5.7	94.3	0.0	-4.88	1.53	0.58	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6S61	10101	2021-05-03	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.80	0.00	1.796	3.96	0.65	1.2	98.8	0.0	4.22	0.68	0.77	0.87	8.65	71060	4128	72	0	30	3854	32904	logfile
✘	7D1T	30547	2021-05-07	2020-09-15	1.95	1.88	1.89	1.9	0.019	1.80	31.0	0.10	18.25	0.02	1.200	3.31	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6CVM	7770	2021-05-06	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.93	0.0	0.07	10.11	0.01	2.053	3.57	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.003	0.59	0.0	0.04	13.78	0.00	2.034	6.03	0.83	2.5	97.5	0.0	0.67	0.36	0.84	0.92	6.94	37062	4084	12	0	20	4194	0	logfile
✔	6QJM	4564	2021-05-03	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.004	0.63	0.0	0.06	13.75	0.00	2.163	7.30	0.00	7.1	92.9	0.0	-2.51	1.60	0.34	0.74	3.67	846	111	3	0	0	0	0	logfile
✔	6ZRF	11380	2021-05-03	2020-07-13	3.6	3.66	1.95	3.6	0.017	1.09	0.0	0.05	13.29	0.00	1.993	39.08	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.6	0.005	0.81	0.0	0.05	14.25	0.00	2.030	27.23	0.00	12.1	87.9	0.0	-5.82	0.50	0.69	0.81	3.06	2220	300	12	0	0	0	0	logfile
✔	6YL3	10835	2021-05-06	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.81	0.0	0.05	16.26	0.01	1.730	5.48	1.50	4.1	95.7	0.2	-0.18	0.53	0.79	0.84	7.05	150156	9552	84	0	24	3672	73044	logfile
✔	6GKM	0024	2021-05-04	2018-05-21	3.87	4.06	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.21	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.003	0.72	0.0	0.04	14.00	0.00	2.050	23.16	0.32	9.3	90.7	0.0	-0.13	1.84	0.62	0.82	2.27	10562	689	4	28	2	0	4402	logfile
✔	6SAG	10130	2021-05-07	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6RiU	4898	2021-05-03	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.69	0.0	0.03	17.16	0.00	2.076	12.13	1.32	3.9	96.1	0.0	0.15	1.58	0.60	0.75	1.05	2882	182	2	0	0	0	1430	logfile
✘	7D1U	30548	2021-05-07	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile

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