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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7A4M | 11638 | 2022-07-10 | 2020-08-20 | 1.22 | 1.13 | 1.28 | 1.2 | 0.010 | 1.38 | 0.0 | 0.09 | 13.82 | 0.01 | 0.001 | 3.09 | 1.18 | 1.8 | 98.2 | 0.0 | 2.86 | 0.40 | 0.57 | 8.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76248 | 4128 | 24 | 0 | 48 | 2640 | 36216 | logfile |
✔ | 6i5A | 4413 | 2022-07-02 | 2018-11-13 | 2.3 | 2.34 | 1.50 | 2.3 | 0.012 | 1.84 | 1.0 | 0.10 | 14.16 | 0.01 | 2.431 | 6.70 | 0.74 | 1.3 | 97.4 | 1.3 | -0.89 | 0.26 | 0.84 | 3.95 | 2.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.349 | 2.93 | 4.44 | 2.0 | 98.0 | 0.0 | 2.46 | 1.23 | 0.30 | 0.88 | 4.22 | 1206 | 153 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5MM2 | 3528 | 2022-07-03 | 2016-12-08 | 2.7 | 12.53 | 1.51 | — | 0.011 | 1.29 | 0.0 | 0.07 | 10.78 | 0.01 | 1.325 | 19.80 | 0.54 | 12.1 | 87.0 | 0.8 | -3.96 | -0.08 | -0.03 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6605 | 854 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PY2 | 13708 | 2022-07-02 | 2021-10-08 | 2.59 | 2.64 | 1.53 | 2.7 | 0.015 | 1.83 | 0.0 | 0.08 | 17.26 | 0.01 | 2.423 | 1.71 | 2.00 | 9.1 | 90.9 | 0.0 | -5.22 | 0.45 | 0.84 | 6.05 | 2.8 | 0.004 | 0.86 | 0.0 | 0.05 | 18.18 | 0.00 | 2.155 | 2.93 | 4.00 | 5.2 | 94.8 | 0.0 | -3.95 | 1.38 | 0.50 | 0.88 | 5.97 | 2152 | 316 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z9F | 11122 | 2022-07-05 | 2020-06-03 | 1.56 | 1.61 | 1.61 | 1.6 | 0.015 | 1.74 | 48.0 | 0.10 | 15.51 | 0.01 | 1.782 | 5.46 | 3.66 | 1.7 | 98.3 | 0.0 | 2.70 | 0.68 | 0.69 | 8.63 | 1.6 | 0.002 | 0.57 | 0.0 | 0.04 | 15.00 | 0.00 | 2.179 | 5.54 | 3.05 | 1.8 | 98.2 | 0.0 | 4.97 | 0.98 | 0.84 | 0.85 | 8.54 | 41020 | 4152 | 72 | 0 | 32 | 4172 | 0 | logfile |
✔ | 7R5o | 14332 | 2022-07-07 | 2022-02-11 | 1.58 | 1.60 | 1.62 | 1.6 | 0.020 | 2.16 | 73.0 | 0.21 | 13.63 | 0.01 | 1.924 | 5.51 | 0.62 | 1.2 | 98.8 | 0.0 | 1.54 | 0.84 | 0.91 | 8.10 | 1.6 | 0.002 | 0.57 | 0.0 | 0.04 | 14.14 | 0.00 | 2.142 | 2.12 | 0.00 | 1.8 | 98.2 | 0.0 | 5.16 | 0.31 | 0.87 | 0.91 | 8.29 | 38520 | 4152 | 72 | 0 | 24 | 3384 | 0 | logfile |
✘ | 7A5V | 11657 | 2022-07-04 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 13.53 | 0.02 | 0.000 | 2.47 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✔ | 6ZN2 | 11309 | 2022-07-03 | 2020-07-06 | 4.3 | 2.35 | 1.71 | 4.5 | 0.004 | 0.93 | 0.0 | 0.04 | 15.06 | 0.01 | 2.001 | 23.20 | 6.35 | 4.3 | 95.7 | 0.0 | -1.42 | 0.74 | 0.77 | — | 4.5 | 0.003 | 0.80 | 0.0 | 0.04 | 14.82 | 0.01 | 2.052 | 20.64 | 0.08 | 4.2 | 95.8 | 0.0 | -1.47 | 1.48 | 0.73 | 0.74 | — | 11320 | 1412 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7MXE | 24072 | 2022-07-05 | 2021-05-19 | 3.7 | 3.77 | 1.71 | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 11.02 | 0.00 | 1.698 | 4.40 | 0.35 | 3.4 | 96.6 | 0.0 | -3.38 | 0.73 | 0.85 | 2.71 | 3.7 | 0.006 | 0.72 | 0.0 | 0.05 | 14.19 | 0.00 | 2.131 | 5.78 | 0.62 | 7.1 | 92.9 | 0.0 | -1.60 | 0.62 | 0.76 | 0.90 | 2.70 | 22149 | 2632 | 51 | 0 | 128 | 0 | 0 | logfile |
✔ | 6MST | 9232 | 2022-07-03 | 2018-10-18 | 2.7 | 2.92 | 1.72 | 2.8 | 0.006 | 0.85 | 0.0 | 0.05 | 7.68 | 0.00 | 2.294 | 1.43 | 0.00 | 1.9 | 98.1 | 0.0 | -4.58 | 0.73 | 0.90 | 7.42 | 2.9 | 0.003 | 0.51 | 0.0 | 0.04 | 15.52 | 0.00 | 2.221 | 6.65 | 0.22 | 2.2 | 97.8 | 0.0 | -3.50 | 1.60 | 0.68 | 0.90 | 6.90 | 5172 | 648 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2022-07-03 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 16.98 | 0.01 | 2.114 | 17.42 | 0.68 | 10.9 | 89.1 | 0.0 | -4.75 | 3.88 | 0.31 | 0.68 | 3.78 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2022-07-04 | 2021-03-21 | 1.77 | 1.79 | 1.83 | 1.9 | 0.033 | 3.16 | 60.0 | 0.09 | 15.47 | 0.02 | 0.000 | 2.38 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.71 | 0.78 | 5.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20020 | 2400 | 20 | 0 | 20 | 780 | 0 | logfile |
✘ | 7EFC | 31083 | 2022-07-04 | 2021-03-21 | 1.7 | 1.76 | 1.83 | 1.9 | 0.032 | 3.16 | 80.0 | 0.09 | 15.03 | 0.02 | 0.000 | 3.39 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.73 | 0.80 | 6.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20020 | 2400 | 20 | 0 | 20 | 780 | 0 | logfile |
✔ | 7QK5 | 14038 | 2022-07-03 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.67 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 18.34 | 0.01 | 2.238 | 4.68 | 2.74 | 3.7 | 96.3 | 0.0 | -1.87 | 1.49 | 0.36 | 0.83 | 7.41 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✔ | 6Y1A | 10669 | 2022-07-02 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.04 | 11.27 | 0.00 | 2.048 | 15.89 | 0.00 | 9.8 | 90.2 | 0.0 | -4.83 | 1.55 | 0.57 | 0.76 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2022-07-04 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.57 | 0.0 | 0.03 | 14.82 | 0.00 | 1.798 | 5.19 | 0.65 | 1.8 | 98.2 | 0.0 | 4.54 | 0.74 | 0.79 | 0.89 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✔ | 7QJW | 14024 | 2022-07-03 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.85 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.002 | 0.61 | 0.0 | 0.05 | 15.46 | 0.00 | 2.213 | 3.70 | 0.51 | 3.0 | 97.0 | 0.0 | -1.53 | 1.60 | 0.39 | 0.77 | 4.34 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 7P6A | 13223 | 2022-07-03 | 2021-07-15 | 1.9 | 1.91 | 1.88 | 1.9 | 0.004 | 0.72 | 0.0 | 0.06 | 12.30 | 0.01 | 2.247 | 3.33 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.51 | 0.86 | 7.13 | 1.9 | 0.003 | 0.65 | 0.0 | 0.05 | 14.09 | 0.00 | 2.291 | 4.28 | 0.00 | 4.7 | 95.3 | 0.0 | -2.61 | 0.82 | 0.55 | 0.89 | 7.80 | 4166 | 540 | 10 | 0 | 0 | 76 | 0 | logfile |
✔ | 7QEQ | 13937 | 2022-07-04 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.009 | 0.61 | 0.0 | 0.04 | 12.54 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.247 | 2.92 | 1.13 | 1.8 | 98.2 | 0.0 | 4.07 | 0.99 | 0.82 | 0.92 | 4.18 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✘ | 7D1T | 30547 | 2022-07-02 | 2020-09-15 | 1.95 | 1.88 | 1.89 | 1.9 | 0.020 | 1.91 | 31.0 | 0.10 | 18.53 | 0.02 | 1.200 | 3.45 | 2.40 | 1.9 | 97.9 | 0.2 | -0.93 | 0.77 | 0.85 | 6.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |