Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A4M	11638	2022-07-10	2020-08-20	1.22	1.13	1.28	1.2	0.010	1.38	0.0	0.09	13.82	0.01	0.001	3.09	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	6i5A	4413	2022-07-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✘	5MM2	3528	2022-07-03	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.80	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	7PY2	13708	2022-07-02	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	6Z9F	11122	2022-07-05	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	5.54	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7R5o	14332	2022-07-07	2022-02-11	1.58	1.60	1.62	1.6	0.020	2.16	73.0	0.21	13.63	0.01	1.924	5.51	0.62	1.2	98.8	0.0	1.54	0.84	0.91	8.10	1.6	0.002	0.57	0.0	0.04	14.14	0.00	2.142	2.12	0.00	1.8	98.2	0.0	5.16	0.31	0.87	0.91	8.29	38520	4152	72	0	24	3384	0	logfile
✘	7A5V	11657	2022-07-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.53	0.02	0.000	2.47	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	6ZN2	11309	2022-07-03	2020-07-06	4.3	2.35	1.71	4.5	0.004	0.93	0.0	0.04	15.06	0.01	2.001	23.20	6.35	4.3	95.7	0.0	-1.42	0.74	0.77	—	4.5	0.003	0.80	0.0	0.04	14.82	0.01	2.052	20.64	0.08	4.2	95.8	0.0	-1.47	1.48	0.73	0.74	—	11320	1412	12	0	8	0	0	logfile
✔	7MXE	24072	2022-07-05	2021-05-19	3.7	3.77	1.71	3.7	0.003	0.61	0.0	0.05	11.02	0.00	1.698	4.40	0.35	3.4	96.6	0.0	-3.38	0.73	0.85	2.71	3.7	0.006	0.72	0.0	0.05	14.19	0.00	2.131	5.78	0.62	7.1	92.9	0.0	-1.60	0.62	0.76	0.90	2.70	22149	2632	51	0	128	0	0	logfile
✔	6MST	9232	2022-07-03	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.003	0.51	0.0	0.04	15.52	0.00	2.221	6.65	0.22	2.2	97.8	0.0	-3.50	1.60	0.68	0.90	6.90	5172	648	12	0	0	0	0	logfile
✔	6R4R	4727	2022-07-03	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.86	0.0	0.05	16.98	0.01	2.114	17.42	0.68	10.9	89.1	0.0	-4.75	3.88	0.31	0.68	3.78	4312	539	7	0	0	0	0	logfile
✘	7EFD	31084	2022-07-04	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	7EFC	31083	2022-07-04	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7QK5	14038	2022-07-03	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.67	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.68	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.83	7.41	10485	666	18	0	36	0	5337	logfile
✔	6Y1A	10669	2022-07-02	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6S61	10101	2022-07-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	7QJW	14024	2022-07-03	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.85	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.002	0.61	0.0	0.05	15.46	0.00	2.213	3.70	0.51	3.0	97.0	0.0	-1.53	1.60	0.39	0.77	4.34	7032	450	6	0	0	0	3588	logfile
✔	7P6A	13223	2022-07-03	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7QEQ	13937	2022-07-04	2021-12-03	1.9	2.38	1.89	2.1	0.009	0.61	0.0	0.04	12.54	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.03	0.00	2.247	2.92	1.13	1.8	98.2	0.0	4.07	0.99	0.82	0.92	4.18	19313	2268	36	0	60	305	0	logfile
✘	7D1T	30547	2022-07-02	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile

• Page 1 of 392
• next →