Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2022-07-05	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	4.11	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.57	0.0	0.04	15.15	0.00	2.188	2.73	1.82	1.8	98.2	0.0	4.61	0.45	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7A6B	11669	2022-07-05	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.34	0.01	1.893	5.30	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.003	0.72	0.0	0.04	14.99	0.01	2.129	4.05	1.79	1.8	98.2	0.0	4.24	0.42	0.76	0.86	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7N5D	24186	2022-07-04	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.41	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.62	0.0	0.04	15.99	0.00	2.173	6.76	1.81	1.7	98.3	0.0	2.42	0.65	0.82	0.82	3.12	20593	2612	14	0	7	0	0	logfile
✔	7RRP	24665	2022-07-04	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	3.20	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.72	0.0	0.04	14.38	0.01	2.040	2.21	0.00	1.8	98.2	0.0	3.84	0.41	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7K3V	22657	2022-07-07	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	3.06	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	2.14	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7K3W	22658	2022-07-07	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.63	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.97	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7N5G	24189	2022-07-02	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7MDW	23782	2022-07-03	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.69	0.0	0.05	14.82	0.00	2.157	18.28	0.56	11.4	88.6	0.0	-3.10	1.35	0.56	0.49	1.70	3392	435	4	0	1	0	0	logfile
✔	7UDS	26458	2022-07-04	2022-03-20	3.1	2.25	3.26	1.5	0.004	0.65	0.0	0.04	13.86	0.00	2.015	10.80	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.005	0.69	0.0	0.05	15.87	0.00	2.003	11.84	0.38	4.7	95.3	0.0	-0.43	1.13	0.76	0.72	2.48	17032	2094	32	0	53	0	0	logfile
✔	7ZGU	14713	2022-07-07	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.86	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	1.6	0.004	0.81	0.0	0.04	17.57	0.01	2.082	14.38	0.80	7.2	92.8	0.0	-1.15	0.99	0.71	0.73	1.70	38940	4854	12	0	6	0	0	logfile
✔	7R40	14250	2022-07-06	2022-02-08	2.9	2.41	2.92	1.5	0.003	0.71	0.0	0.05	13.90	0.01	2.324	4.84	0.00	4.8	95.2	0.0	-2.66	0.68	0.63	1.24	1.6	0.004	0.76	0.0	0.05	16.28	0.01	2.084	15.13	2.56	6.1	93.9	0.0	-1.37	0.69	0.72	0.70	1.46	30615	3840	24	0	51	0	0	logfile
✔	6Z9F	11122	2022-07-05	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	5.54	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7VX7	32170	2022-07-05	2021-11-12	3.6	2.45	—	1.8	0.010	1.26	1.0	0.07	9.43	0.01	1.349	4.79	0.11	3.8	95.9	0.3	-1.25	0.54	0.44	0.90	1.6	0.005	0.76	0.0	0.05	13.73	0.01	2.081	13.12	0.40	4.7	95.2	0.1	-0.62	0.86	0.64	0.62	1.22	24717	3162	3	0	0	0	0	logfile
✔	7SiM	25144	2022-07-03	2021-10-14	2.7	2.00	—	1.6	0.005	0.69	0.0	0.05	13.44	0.00	2.302	7.94	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.006	0.87	0.0	0.04	15.91	0.00	2.210	9.55	1.11	1.6	98.4	0.0	0.40	0.93	0.75	0.76	3.19	12826	1564	8	0	28	0	0	logfile
✔	7LD0	23278	2022-07-07	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	9.07	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	1.6	0.004	0.78	0.0	0.04	16.98	0.00	2.053	10.80	0.33	4.9	95.1	0.0	-0.30	0.60	0.77	0.77	0.86	36976	4720	8	0	0	0	0	logfile
✔	7R5o	14332	2022-07-07	2022-02-11	1.58	1.60	1.62	1.6	0.020	2.16	73.0	0.21	13.63	0.01	1.924	5.51	0.62	1.2	98.8	0.0	1.54	0.84	0.91	8.10	1.6	0.002	0.57	0.0	0.04	14.14	0.00	2.142	2.12	0.00	1.8	98.2	0.0	5.16	0.31	0.87	0.91	8.29	38520	4152	72	0	24	3384	0	logfile
✔	7KBB	22788	2022-07-03	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	15.05	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.008	1.17	0.0	0.05	14.56	0.01	2.104	16.16	0.00	6.4	93.6	0.0	-0.45	1.23	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	7o6E	12738	2022-07-06	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	7VD8	31910	2022-07-07	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7Z1Z	14453	2022-07-07	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.006	0.82	0.0	0.05	18.28	0.01	2.072	15.77	0.34	3.9	96.1	0.0	-0.07	0.74	0.68	0.68	1.51	35605	4031	36	140	12	0	0	logfile

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