Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J5A	35984	2023-08-23	2023-04-21	1.19	1.12	1.22	1.2	0.014	1.48	0.0	0.08	13.93	0.01	1.560	8.49	3.21	0.6	99.4	0.0	3.37	0.51	0.66	8.67	1.2	0.003	0.57	0.0	0.03	14.11	0.00	1.975	14.59	2.56	1.8	98.2	0.0	5.37	0.22	0.69	0.82	8.60	56208	4128	24	0	24	3384	17040	logfile
✔	7A6A	11668	2023-08-20	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7N5D	24186	2023-08-16	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	8CTE	26988	2023-08-24	2022-05-14	2.9	1.86	2.80	1.5	0.003	0.53	1.0	0.04	11.34	0.00	2.214	5.55	2.34	1.6	98.3	0.1	2.02	0.78	0.75	3.53	1.4	0.003	0.54	0.0	0.04	15.01	0.00	2.104	7.16	1.53	1.8	98.1	0.1	1.87	0.57	0.82	0.81	3.91	38844	4984	21	0	16	0	0	logfile
✔	7T2G	25612	2023-08-10	2021-12-04	2.5	1.71	—	1.4	0.009	1.14	0.0	0.05	12.09	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.004	0.81	0.0	0.04	15.33	0.00	2.126	11.11	1.57	2.7	97.3	0.0	0.65	0.36	0.80	0.81	4.61	6922	898	4	0	3	8	0	logfile
✔	7K3V	22657	2023-08-24	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	21.25	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.05	14.91	0.01	1.971	1.78	0.00	1.2	98.8	0.0	3.72	0.35	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7VUH	32128	2023-08-11	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.4	0.005	0.70	0.0	0.04	15.83	0.00	2.031	14.94	0.11	6.0	94.0	0.0	-1.28	0.38	0.72	0.73	2.42	8302	1042	5	0	1	0	0	logfile
✔	7MDW	23782	2023-08-09	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	7N5G	24189	2023-08-09	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	8oR0	17114	2023-08-15	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	1.5	0.004	0.72	0.0	0.04	16.60	0.00	2.020	13.34	0.36	4.7	95.3	0.0	-0.12	1.69	0.70	0.65	0.89	18823	2489	8	0	3	0	0	logfile
✔	7UDS	26458	2023-08-14	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	13.46	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.71	0.0	0.05	15.60	0.00	2.095	11.66	0.54	4.8	95.2	0.0	-0.41	1.13	0.75	0.73	2.24	17032	2094	32	0	53	0	0	logfile
✔	7M4Y	23670	2023-08-23	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.28	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.83	0.0	0.05	16.57	0.01	1.633	4.85	3.93	3.2	96.7	0.1	0.24	0.30	0.79	0.77	3.86	139817	5511	80	4453	200	1044	0	logfile
✔	7UWJ	26833	2023-08-09	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.05	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.69	0.0	0.04	15.07	0.00	2.209	10.86	1.00	5.8	94.2	0.0	-2.11	0.45	0.68	0.65	1.84	5314	664	6	0	6	0	0	logfile
✔	7UWN	26837	2023-08-11	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.59	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.05	16.70	0.00	2.117	15.57	0.51	6.0	94.0	0.0	-1.14	0.33	0.66	0.64	0.94	10602	1325	12	0	11	0	0	logfile
✔	7K3W	22658	2023-08-24	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✔	7FiJ	31599	2023-08-09	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	8FKX	29260	2023-08-22	2022-12-21	2.59	2.79	2.72	1.7	0.003	0.55	0.0	0.04	13.14	0.00	1.961	1.77	0.01	1.2	98.8	0.0	1.69	0.79	0.82	3.59	1.6	0.006	0.58	0.0	0.04	14.18	0.00	1.866	5.16	1.15	2.2	97.8	0.0	1.73	1.14	0.80	0.87	3.25	138643	10793	67	2472	65	0	0	logfile
✔	7M4X	23669	2023-08-23	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7oUF	13075	2023-08-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.56	0.0	0.04	17.36	0.00	1.686	6.25	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.84	0.01	1.946	10.18	1.99	2.3	97.7	0.0	0.00	1.74	0.79	0.80	2.77	15094	1664	16	80	10	12	0	logfile
✔	7XJG	33226	2023-08-13	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile

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