Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N5D	24186	2023-02-23	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	7UWN	26837	2023-02-19	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.62	0.0	0.04	16.48	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.003	0.62	0.0	0.04	16.58	0.00	2.124	14.56	0.26	6.0	94.0	0.0	-1.06	0.32	0.66	0.63	0.79	10602	1325	12	0	11	0	0	logfile
✔	7UDS	26458	2023-02-22	2022-03-20	3.1	2.25	3.26	1.5	0.004	0.65	0.0	0.04	13.86	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.67	0.0	0.05	15.81	0.00	2.107	10.89	0.22	4.8	95.2	0.0	-0.34	0.28	0.75	0.73	2.28	17032	2094	32	0	53	0	0	logfile
✔	7MDW	23782	2023-02-17	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.68	0.0	0.05	14.76	0.00	2.170	17.08	0.28	11.9	88.1	0.0	-3.01	1.34	0.56	0.49	1.78	3392	435	4	0	1	0	0	logfile
✔	7UTZ	26795	2023-02-24	2022-04-28	2.4	2.07	—	2.4	0.004	0.68	0.0	0.04	12.23	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.003	0.57	0.0	0.04	14.99	0.00	1.896	8.92	1.56	4.2	95.8	0.0	-0.01	0.78	0.72	0.76	3.37	23679	1536	10	0	8	0	11632	logfile
✔	7USM	26739	2023-02-20	2022-04-25	2.7	2.25	—	1.5	0.003	0.61	0.0	0.04	12.70	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.004	0.72	0.0	0.05	16.20	0.00	2.103	9.89	1.60	4.2	95.8	0.0	-0.64	0.47	0.74	0.72	2.37	11893	1521	5	0	15	0	0	logfile
✔	7FiJ	31599	2023-02-17	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	7UX1	26845	2023-02-26	2022-05-04	3.48	2.70	3.65	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.003	0.60	0.0	0.04	13.17	0.00	1.924	7.64	0.57	3.7	96.3	0.0	2.02	0.45	0.77	0.76	1.70	28931	4991	7	0	0	0	0	logfile
✔	7KBB	22788	2023-02-18	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile
✔	7UAF	26423	2023-02-22	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.80	13.0	0.10	13.79	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.003	0.60	0.0	0.04	17.00	0.00	1.994	6.71	2.16	3.6	96.4	0.0	0.15	1.19	0.83	0.83	4.11	17864	2131	22	0	58	0	0	logfile
✔	7R40	14250	2023-02-27	2022-02-08	2.9	2.41	2.92	1.5	0.003	0.71	0.0	0.05	13.90	0.01	2.324	4.76	0.00	4.8	95.2	0.0	-2.66	0.68	0.63	1.24	1.6	0.004	0.75	0.0	0.05	16.28	0.00	2.142	15.18	2.53	5.9	94.1	0.0	-1.37	0.70	0.72	0.69	1.57	30615	3840	24	0	51	0	0	logfile
✔	7S8L	24896	2023-02-18	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7oUF	13075	2023-02-21	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.56	0.0	0.04	17.36	0.00	1.686	6.18	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.84	0.01	1.946	10.11	1.99	2.3	97.7	0.0	0.00	1.74	0.79	0.80	2.77	15094	1664	16	80	10	12	0	logfile
✔	7XJG	33226	2023-02-20	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile
✔	7M4U	23666	2023-02-21	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	8CS9	26960	2023-02-23	2022-05-12	2.74	1.95	—	1.6	0.006	0.84	0.0	0.05	18.24	0.01	2.218	10.19	3.66	2.2	97.5	0.3	0.33	0.82	0.81	3.50	1.6	0.003	0.66	0.0	0.04	17.96	0.00	2.134	8.25	2.63	1.9	98.1	0.0	1.54	0.38	0.83	0.83	3.46	60944	7677	39	0	27	268	0	logfile
✔	7SiL	25143	2023-02-20	2021-10-14	2.7	1.97	—	1.5	0.004	0.68	0.0	0.05	13.57	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.004	0.60	0.0	0.04	15.99	0.00	2.177	8.17	1.70	3.0	97.0	0.0	0.52	0.39	0.77	0.78	2.92	12924	1564	8	0	34	0	0	logfile
✔	7L1Q	23115	2023-02-24	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.68	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.003	0.80	0.0	0.05	17.82	0.01	1.889	15.87	0.82	3.4	96.5	0.0	-0.23	1.90	0.73	0.73	1.36	24204	3118	13	0	13	0	0	logfile
✔	7S3H	24823	2023-02-19	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.86	0.01	2.234	3.77	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.76	0.00	2.130	12.44	1.96	2.8	97.2	0.0	-0.10	0.74	0.78	0.76	1.99	9966	1030	4	75	1	0	0	logfile
✔	7oUG	13076	2023-02-21	2021-06-11	3.1	2.33	3.12	1.7	0.004	0.74	0.0	0.04	17.59	0.01	1.769	5.66	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.66	0.0	0.04	19.44	0.00	1.919	9.41	0.48	2.1	97.9	0.0	0.04	0.63	0.78	0.79	2.36	15090	1664	16	80	10	8	0	logfile

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