Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2021-05-04	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.70	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.002	0.61	0.0	0.04	15.16	0.00	2.184	3.79	1.82	1.8	98.2	0.0	5.05	0.43	0.66	0.79	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7A6B	11669	2021-05-04	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.33	0.01	1.893	4.57	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.003	0.71	0.0	0.04	14.86	0.00	2.134	3.56	1.79	1.8	98.2	0.0	4.63	0.40	0.73	0.84	9.03	41494	4152	72	0	32	3854	0	logfile
✔	7K3V	22657	2021-05-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.004	0.80	0.0	0.04	14.89	0.01	2.009	2.36	0.00	1.2	98.8	0.0	4.04	0.21	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	6Z9F	11122	2021-05-04	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.75	48.0	0.10	15.49	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.62	0.0	0.04	15.13	0.01	2.154	5.53	3.05	1.8	98.2	0.0	4.99	0.85	0.82	0.83	8.66	41020	4152	72	0	32	4172	0	logfile
✔	7A5V	11657	2021-05-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.54	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.7	0.005	0.83	0.0	0.05	14.30	0.01	0.000	5.73	0.43	1.2	98.8	0.0	1.51	0.43	0.68	0.84	6.61	21155	2275	30	0	85	1015	0	logfile
✔	6W6P	21562	2021-05-03	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.41	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.006	0.82	0.0	0.05	16.37	0.01	1.942	5.92	8.84	10.2	89.7	0.1	-2.03	1.16	0.78	0.86	2.62	133554	5058	51	4378	4	0	0	logfile
✔	7K00	22586	2021-05-06	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.33	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.005	0.78	0.0	0.04	15.30	0.01	1.822	7.88	2.97	3.8	96.1	0.0	0.04	0.87	0.71	0.86	4.90	149338	5585	117	4555	331	7248	0	logfile
✔	7C7S	30301	2021-05-04	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.72	0.01	2.153	7.81	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.70	0.0	0.04	15.80	0.01	2.163	9.05	3.22	4.2	95.8	0.0	-0.18	0.58	0.83	0.81	2.65	10915	1355	4	0	9	0	0	logfile
✔	6Xi8	22191	2021-05-03	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.006	1.30	0.0	0.05	17.72	0.01	2.095	19.86	0.97	9.2	90.8	0.0	-2.43	1.33	0.69	0.63	0.22	5022	636	4	0	2	0	0	logfile
✔	6ZGL	11210	2021-05-04	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.004	0.63	0.0	0.04	15.87	0.00	2.106	5.97	1.12	1.2	98.8	0.0	3.10	0.38	0.74	0.82	7.24	15760	1848	24	0	0	964	0	logfile
✔	6S61	10101	2021-05-03	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.80	0.00	1.796	3.96	0.65	1.2	98.8	0.0	4.22	0.68	0.77	0.87	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6TAX	10429	2021-05-06	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.47	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.80	0.00	2.088	9.58	0.13	7.3	92.7	0.0	0.07	1.92	0.88	0.80	1.95	35235	4349	1	0	71	0	0	logfile
✔	6YL3	10835	2021-05-06	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.81	0.0	0.05	16.26	0.01	1.730	5.48	1.50	4.1	95.7	0.2	-0.18	0.53	0.79	0.84	7.05	150156	9552	84	0	24	3672	73044	logfile
✔	7LT3	23510	2021-05-05	2021-02-18	4.6	3.52	—	4.3	0.012	1.33	34.0	0.08	16.13	0.01	2.017	24.92	1.63	10.7	89.2	0.1	-2.30	0.59	0.56	—	2.0	0.004	0.85	0.0	0.05	15.01	0.01	2.081	21.28	0.00	5.8	94.1	0.0	-0.72	1.88	0.60	0.66	—	93244	11261	22	122	42	0	0	logfile
✔	7KoD	22972	2021-05-03	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.87	0.00	1.855	1.87	0.08	0.9	99.1	0.0	5.18	0.59	0.88	0.94	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	7JSX	22462	2021-05-06	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.73	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.69	0.0	0.05	14.48	0.00	2.145	8.01	0.69	2.5	97.5	0.0	0.89	0.64	0.81	0.88	6.21	38813	4832	40	0	0	1141	0	logfile
✔	6YBQ	10771	2021-05-06	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.67	0.0	0.05	15.94	0.00	2.181	4.78	0.41	2.6	97.4	0.0	0.29	0.96	0.83	0.89	5.90	34092	4289	36	0	12	871	0	logfile
✔	7LJC	23390	2021-05-03	2021-01-28	3.0	2.23	—	2.1	0.040	1.14	0.0	0.23	9.18	0.01	2.282	5.07	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.004	0.75	0.0	0.04	14.73	0.01	2.094	14.89	2.23	2.7	97.3	0.0	0.44	1.64	0.79	0.83	3.18	8544	1040	6	0	14	0	0	logfile
✔	7LD0	23278	2021-05-06	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	8.80	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	2.0	0.005	0.79	0.0	0.04	17.17	0.01	2.000	11.45	0.41	5.0	95.0	0.0	-0.64	0.62	0.77	0.76	0.97	36976	4720	8	0	0	0	0	logfile
✔	6UVN	20908	2021-05-05	2019-11-03	3.1	2.62	—	2.0	0.010	0.84	1.0	0.05	14.35	0.00	2.114	18.82	0.52	8.1	91.8	0.1	-3.87	0.89	0.81	2.57	2.0	0.003	0.59	0.0	0.04	15.69	0.00	1.922	12.81	0.29	5.4	94.6	0.0	-0.96	0.51	0.89	0.81	2.08	29487	3461	14	61	83	0	0	logfile

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