Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PQG	13593	2022-07-02	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.005	1.15	0.0	0.06	15.61	0.01	2.144	36.06	0.28	7.9	92.1	0.0	-1.40	1.22	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	7QEV	13942	2022-07-02	2021-12-03	2.9	3.46	—	3.1	0.010	0.74	0.0	0.05	13.76	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	15.95	0.00	2.153	5.61	1.17	2.9	97.1	0.0	2.25	1.67	0.79	0.86	2.57	3204	383	6	0	8	8	0	logfile
✔	7W37	32272	2022-07-02	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	13.99	0.01	1.712	5.08	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.005	0.66	0.0	0.04	15.42	0.00	1.797	10.41	0.84	6.5	93.5	0.1	0.80	0.35	0.86	0.87	1.97	106025	13527	54	0	13	0	0	logfile
✔	7PQQ	13596	2022-07-02	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.4	0.003	0.68	0.0	0.04	16.38	0.00	2.209	10.37	0.28	3.6	96.4	0.0	-1.62	0.52	0.45	0.75	2.03	3207	417	2	0	0	0	0	logfile
✔	7UHB	26511	2022-07-02	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.15	0.00	2.244	9.43	1.90	3.4	96.6	0.0	0.52	2.43	0.70	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	7QEU	13941	2022-07-02	2021-12-03	2.7	3.39	—	3.0	0.009	0.68	0.0	0.04	13.62	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.59	0.0	0.04	15.00	0.00	2.243	3.99	1.24	2.3	97.7	0.0	3.28	0.49	0.78	0.87	2.55	3002	359	6	0	6	7	0	logfile
✔	7V2o	31658	2022-07-02	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	16.74	0.00	2.203	6.85	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.006	0.67	0.0	0.04	17.13	0.00	2.073	11.29	0.18	6.5	93.4	0.1	-0.32	0.37	0.80	0.83	1.98	53005	2624	24	1487	2	0	0	logfile
✔	7W38	32273	2022-07-02	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	13.91	0.01	1.750	5.55	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.004	0.62	0.0	0.04	15.14	0.00	1.824	10.83	0.17	6.0	93.9	0.1	0.76	0.77	0.87	0.87	1.89	106178	13539	55	0	13	0	0	logfile
✔	7W39	32274	2022-07-02	2021-11-25	3.2	4.39	—	2.8	0.004	0.81	0.0	0.05	13.41	0.01	1.455	5.34	0.15	5.9	94.1	0.0	-0.76	0.83	0.81	2.04	2.8	0.003	0.59	0.0	0.04	14.69	0.00	1.888	9.91	0.21	6.0	94.0	0.0	0.80	0.33	0.86	0.84	1.68	106442	13535	56	0	21	0	0	logfile
✘	7DGR	30674	2022-07-02	2020-11-12	4.6	5.38	—	4.5	0.013	1.55	17.0	0.08	12.73	0.01	1.167	30.91	2.47	13.5	84.5	2.0	-5.61	0.72	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7VU8	32126	2022-07-02	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	11.96	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.004	0.72	0.0	0.05	16.71	0.00	2.400	7.07	5.96	6.0	94.0	0.0	-1.74	1.18	0.39	0.78	3.40	1433	170	1	0	1	0	0	logfile
✘	7S15	24794	2022-07-02	2021-09-01	3.8	4.41	—	4.2	0.006	0.80	0.0	0.05	16.03	0.00	1.222	12.66	0.00	12.0	88.0	0.0	-4.51	0.51	0.77	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3207	382	1	0	1	0	0	logfile
✔	7WX4	32876	2022-07-02	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.004	0.55	0.0	0.04	17.63	0.00	2.140	5.46	0.00	6.0	94.0	0.0	-0.17	0.44	0.42	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	7QES	13939	2022-07-02	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.28	0.00	2.162	3.90	0.91	3.1	96.9	0.0	2.67	1.25	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	7V2L	31655	2022-07-02	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.72	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.007	0.69	0.0	0.04	16.94	0.01	2.047	8.58	0.59	8.0	91.9	0.1	-0.56	0.26	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	7V2Q	31660	2022-07-02	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	15.54	0.00	2.189	6.79	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.005	0.66	0.0	0.04	16.40	0.01	2.117	10.60	0.45	6.4	93.6	0.0	-0.38	1.47	0.82	0.87	2.05	52904	2875	25	1391	2	0	0	logfile
✔	7KU5	23034	2022-07-02	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.038	3.67	0.0	0.08	18.32	0.01	2.079	18.87	0.00	11.6	88.4	0.0	-1.92	1.16	0.25	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7TMT	26002	2022-07-02	2022-01-20	3.8	4.02	—	3.9	0.005	0.65	0.0	0.04	12.45	0.00	2.109	10.93	0.19	4.7	95.2	0.1	1.20	0.86	0.85	2.16	3.9	0.007	0.81	2.0	0.04	14.28	0.01	1.730	14.44	0.46	4.2	95.7	0.1	0.78	1.26	0.86	0.85	1.84	53433	8221	32	0	1	0	0	logfile
✔	7QEo	13935	2022-07-02	2021-12-03	2.9	3.47	—	3.1	0.008	0.69	0.0	0.04	13.62	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.63	0.0	0.04	15.41	0.00	2.184	6.36	0.91	2.5	97.5	0.0	2.81	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7Z13	14439	2022-07-02	2022-02-24	3.4	3.29	—	3.3	0.003	0.66	2.0	0.04	15.72	0.00	1.997	7.37	0.13	3.8	96.1	0.0	-0.12	0.66	0.78	2.01	3.3	0.003	0.64	0.0	0.04	17.68	0.00	2.026	7.53	0.31	4.1	95.9	0.0	0.14	0.48	0.65	0.81	1.75	107381	13128	42	106	32	0	0	logfile

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