Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Lii	4053	2023-08-08	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7YDQ	33756	2023-08-09	2022-07-04	4.04	4.32	4.02	4.4	0.011	0.82	0.0	0.04	17.28	0.01	2.262	10.34	0.57	3.2	96.8	0.0	1.21	0.46	0.63	—	4.4	0.003	0.72	0.0	0.04	14.00	0.00	2.257	10.03	0.19	3.6	96.4	0.0	0.89	0.55	0.55	0.69	—	4778	598	1	0	1	0	0	logfile
✔	7WSo	32762	2023-08-09	2022-01-30	3.03	3.25	—	3.3	0.014	1.29	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.004	0.65	0.0	0.04	14.22	0.00	2.324	4.31	0.00	3.6	96.4	0.0	-0.35	1.27	0.66	0.84	3.03	6204	780	4	0	0	0	0	logfile
✔	7WPZ	32693	2023-08-09	2022-01-24	3.8	3.48	—	3.6	0.013	1.41	1.0	0.11	9.57	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.002	0.56	0.0	0.04	13.59	0.00	2.222	4.23	0.00	2.2	97.8	0.0	1.68	1.38	0.78	0.79	2.18	5756	787	8	0	15	0	0	logfile
✔	6YW7	10960	2023-08-09	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6W8o	21576	2023-08-09	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.1	0.005	0.97	0.0	0.05	17.25	0.00	2.031	19.32	0.75	6.9	93.1	0.0	-0.03	1.18	0.55	0.78	1.50	6332	832	2	0	0	0	0	logfile
✔	7LMS	23441	2023-08-09	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	4.0	0.002	0.59	0.0	0.04	14.69	0.00	2.183	6.65	0.38	1.5	98.5	0.0	0.72	1.43	0.74	0.82	2.22	4947	613	4	0	1	0	0	logfile
✘	7SAX	24958	2023-08-09	2021-09-23	3.0	2.60	2.97	3.0	0.007	0.66	0.0	0.04	13.54	0.00	2.174	5.46	0.00	3.3	96.7	0.0	1.22	0.58	0.85	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5305	689	7	0	0	0	0	logfile
✔	7Y4S	33606	2023-08-09	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.59	0.0	0.04	15.07	0.00	2.245	9.12	0.69	2.5	97.5	0.0	2.64	1.58	0.73	0.79	2.96	4940	686	2	0	0	0	0	logfile
✔	7DA5	30623	2023-08-09	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.04	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.004	0.78	0.0	0.04	16.11	0.00	2.233	8.41	0.91	5.1	94.9	0.0	0.00	1.49	0.49	0.71	2.09	4013	591	2	0	0	0	0	logfile
✔	6XLK	22246	2023-08-09	2020-06-28	3.3	3.63	—	3.5	0.008	0.76	0.0	0.05	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.003	0.53	0.0	0.04	20.59	0.00	2.270	8.09	0.41	1.5	98.5	0.0	0.58	0.43	0.79	0.85	2.20	5456	536	6	46	4	0	0	logfile
✔	7NCK	12269	2023-08-09	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.003	0.58	0.0	0.05	15.74	0.00	2.151	7.19	0.37	4.3	95.7	0.0	-2.05	0.92	0.33	0.71	2.63	5430	384	6	0	0	0	2778	logfile
✔	7S1Z	24813	2023-08-09	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.004	0.63	0.0	0.04	14.70	0.00	2.159	10.34	0.18	9.3	90.7	0.0	-0.08	0.47	0.47	0.69	1.74	6416	944	2	0	0	0	0	logfile
✔	7RHY	24471	2023-08-09	2021-07-19	3.91	4.12	4.00	4.0	0.005	0.80	0.0	0.05	21.78	0.01	2.404	3.31	0.80	2.0	98.0	0.0	-1.06	0.74	0.76	2.28	4.1	0.004	0.64	0.0	0.04	23.26	0.00	2.317	5.99	0.40	4.7	95.3	0.0	1.39	0.90	0.74	0.78	1.86	6350	301	2	49	0	0	2957	logfile
✔	7N0K	24107	2023-08-09	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	7SAU	24957	2023-08-09	2021-09-23	3.0	2.41	2.77	2.7	0.005	0.61	0.0	0.04	13.77	0.01	2.122	6.13	0.15	5.1	94.9	0.0	0.64	0.61	0.84	3.01	2.7	0.003	0.55	0.0	0.04	17.55	0.00	2.131	7.16	1.21	4.5	95.5	0.0	2.39	0.54	0.60	0.84	2.26	6317	791	7	0	0	0	0	logfile
✔	7CKR	30391	2023-08-09	2020-07-18	3.0	3.32	—	3.4	0.009	1.22	9.0	0.09	17.22	0.01	1.896	18.09	11.04	8.0	91.9	0.2	-2.89	0.45	0.60	2.22	3.3	0.003	0.78	0.0	0.05	17.05	0.01	2.178	14.60	3.58	4.1	95.9	0.0	0.75	1.85	0.53	0.73	1.92	4094	597	3	0	1	0	0	logfile
✔	8EF9	28075	2023-08-09	2022-09-08	2.4	2.51	2.38	2.5	0.013	0.84	0.0	0.05	18.48	0.01	1.958	9.51	0.00	5.8	94.0	0.2	-0.41	0.69	0.76	2.68	2.6	0.003	0.58	0.0	0.04	19.92	0.00	1.894	12.52	0.97	6.2	93.8	0.0	0.25	0.35	0.70	0.79	2.70	5240	599	4	26	2	0	0	logfile
✔	7CKo	30389	2023-08-09	2020-07-18	2.95	3.28	—	3.3	0.012	1.32	10.0	0.13	16.64	0.01	1.964	11.96	12.88	9.1	90.8	0.2	-2.69	0.47	0.62	2.15	3.3	0.004	0.84	0.0	0.04	16.28	0.01	2.084	9.99	4.29	5.0	95.0	0.0	-0.14	2.24	0.47	0.70	1.77	4029	591	3	0	1	0	0	logfile
✔	8DT3	27690	2023-08-09	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.67	0.0	0.04	13.45	0.00	2.125	10.67	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.66	0.0	0.05	15.28	0.00	2.083	12.94	0.00	8.0	92.0	0.0	-0.49	0.39	0.79	0.85	2.73	3821	485	4	0	3	0	0	logfile

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