Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MZJ	9303	2021-01-05	2018-11-05	4.8	5.06	—	4.4	0.014	1.51	0.0	0.08	8.06	0.00	2.352	0.86	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.008	1.00	0.0	0.06	8.68	0.01	2.129	12.80	0.00	15.9	84.0	0.1	-2.90	2.29	0.76	0.82	—	12653	2088	10	0	149	0	0	logfile
✔	6JXR	9895	2021-01-05	2019-04-24	3.7	3.95	—	3.9	0.007	1.02	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.003	0.68	0.0	0.04	13.24	0.00	2.175	10.13	0.00	6.3	93.6	0.1	-0.02	2.52	0.67	0.79	2.58	8437	1073	8	0	0	0	0	logfile
✔	6R6B	4734	2021-01-05	2019-03-26	3.5	4.29	3.51	3.9	0.010	1.36	1.0	0.07	12.49	0.01	1.771	6.90	1.97	8.6	91.1	0.4	-5.15	0.70	0.70	2.25	3.9	0.003	0.88	0.0	0.04	12.98	0.00	2.093	13.85	0.00	6.8	93.1	0.1	0.11	4.26	0.73	0.84	0.95	11416	1452	10	0	0	0	0	logfile
✔	6MSM	9230	2021-01-05	2018-10-16	3.2	3.50	—	3.7	0.012	1.58	1.0	0.22	13.97	0.01	1.955	7.53	0.39	4.2	95.8	0.0	-2.75	0.53	0.75	2.57	3.7	0.003	0.77	0.0	0.07	14.25	0.00	2.007	6.36	0.00	2.8	97.2	0.0	0.93	0.77	0.61	0.82	2.50	9703	1181	3	0	27	0	0	logfile
✔	6PYH	20524	2021-01-05	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.13	0.55	18.1	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.64	0.0	0.04	13.59	0.00	2.032	13.35	0.00	7.9	92.0	0.1	-2.27	0.69	0.83	0.81	—	13187	1648	3	0	0	0	0	logfile
✔	6oT0	20190	2021-01-05	2019-05-02	3.84	4.10	—	4.4	0.019	1.34	0.0	0.07	14.65	0.01	2.191	3.15	0.79	6.3	93.7	0.0	-3.15	0.53	0.75	0.80	4.4	0.004	0.77	0.0	0.04	14.16	0.00	2.044	19.09	0.09	8.0	92.0	0.0	-1.57	1.35	0.56	0.78	0.95	10572	1345	7	0	1	0	0	logfile
✔	5ooF	3839	2021-01-05	2017-08-07	3.4	3.53	3.41	3.5	0.015	1.54	0.0	0.08	11.80	0.02	2.010	2.86	0.00	6.3	91.0	2.7	-1.40	0.71	0.85	2.69	3.5	0.007	0.79	0.0	0.05	13.83	0.00	2.004	8.67	0.00	4.3	95.1	0.5	-0.19	2.16	0.70	0.86	2.58	14640	1855	10	0	10	0	0	logfile
✔	6RQJ	4983	2021-01-05	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.34	0.00	2.041	10.88	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	3.7	0.004	0.65	0.0	0.04	13.59	0.00	2.180	9.84	0.06	5.4	94.6	0.0	-0.66	0.54	0.89	0.85	2.25	14971	1899	6	0	2	0	0	logfile
✔	6R69	4733	2021-01-05	2019-03-26	3.65	4.14	3.57	3.7	0.005	0.90	0.0	0.04	14.42	0.01	2.191	12.95	0.15	9.8	89.8	0.4	-3.99	0.75	0.76	0.73	3.8	0.003	0.81	0.0	0.04	13.73	0.01	2.145	11.95	0.07	7.3	92.7	0.0	0.61	0.94	0.76	0.81	0.97	12541	1629	10	0	0	0	0	logfile
✔	6RZB	10061	2021-01-05	2019-06-13	4.1	4.19	3.09	4.2	0.014	1.87	5.0	0.12	17.68	0.01	2.096	9.24	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.003	0.73	0.0	0.04	14.66	0.00	1.965	15.57	0.00	2.5	97.5	0.0	0.19	1.48	0.68	0.82	—	8001	1001	5	1	3	0	0	logfile
✔	6HRF	0260	2021-01-05	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.006	0.80	0.0	0.05	14.46	0.00	2.270	6.57	0.25	6.7	93.3	0.0	-3.47	3.76	0.37	0.77	3.84	3522	462	6	0	0	0	0	logfile
✔	6oGZ	20060	2021-01-05	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.003	0.60	0.0	0.04	14.83	0.00	2.160	8.92	0.08	3.4	96.6	0.0	-1.97	1.44	0.46	0.85	2.32	74962	9081	14	35	2	0	0	logfile
✔	3JAD	6344	2021-01-05	2015-06-08	3.9	2.16	—	3.8	0.013	1.36	0.0	0.07	9.02	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.003	0.76	0.0	0.04	12.02	0.00	2.123	16.91	0.00	4.7	95.3	0.0	0.57	1.28	0.70	0.77	0.37	12705	1685	10	0	15	0	0	logfile
✔	5o09	3726	2021-01-05	2017-05-16	3.6	3.66	—	3.7	0.014	1.49	32.0	0.10	13.27	0.01	0.180	18.36	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.004	0.77	0.0	0.04	14.14	0.00	2.093	19.01	0.03	5.5	94.5	0.0	-0.83	1.68	0.60	0.74	1.49	67424	8648	40	16	0	0	0	logfile
✔	6CoZ	7545	2021-01-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.004	0.88	0.0	0.04	6.14	0.00	2.319	9.28	0.00	17.9	82.1	0.0	-2.45	1.69	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6RZA	10060	2021-01-05	2019-06-13	4.5	4.56	4.30	4.5	0.014	1.87	16.0	0.12	17.50	0.01	2.089	9.29	6.90	4.4	94.9	0.6	-2.20	0.60	0.71	—	4.5	0.014	0.83	0.0	0.05	15.03	0.01	1.835	26.72	0.06	6.5	93.5	0.1	-0.94	2.62	0.60	0.71	—	14908	1867	9	2	6	0	0	logfile
✔	5ooE	3838	2021-01-05	2017-08-07	3.6	3.72	3.50	3.7	0.016	1.60	0.0	0.07	11.01	0.02	1.939	3.24	0.00	4.8	93.2	2.0	-1.39	0.68	0.85	2.69	3.7	0.003	0.63	0.0	0.04	13.43	0.00	2.065	9.27	0.00	3.3	96.7	0.0	0.75	2.67	0.68	0.85	2.85	14310	1810	10	0	10	0	0	logfile
✔	3JAF	6346	2021-01-05	2015-06-08	3.8	2.26	—	3.8	0.015	1.30	0.0	0.41	10.07	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.22	0.0	0.13	12.50	0.00	2.177	16.38	0.00	3.1	96.9	0.0	0.39	1.83	0.72	0.81	1.19	13865	1710	10	0	15	0	0	logfile
✔	6DLU	7957	2021-01-05	2018-06-02	3.75	3.84	—	3.8	0.010	0.87	0.0	0.05	9.95	0.00	1.944	12.31	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.63	0.0	0.04	12.76	0.00	2.010	8.82	0.00	5.1	94.9	0.0	-0.02	1.38	0.32	0.81	1.42	11991	1481	4	0	4	0	0	logfile
✔	6E7B	8997	2021-01-05	2018-07-25	3.5	3.67	3.28	3.7	0.008	0.79	0.0	0.04	11.53	0.00	2.009	5.71	0.14	6.5	93.5	0.0	-4.13	0.56	0.76	2.80	3.6	0.003	0.66	0.0	0.04	13.51	0.00	2.002	15.77	0.00	3.4	96.6	0.0	-1.02	0.98	0.57	0.79	2.44	6774	854	4	0	4	0	0	logfile

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