The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MZJ | 9303 | 2021-01-05 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.014 | 1.51 | 0.0 | 0.08 | 8.06 | 0.00 | 2.352 | 0.86 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | 4.5 | 0.008 | 1.00 | 0.0 | 0.06 | 8.68 | 0.01 | 2.129 | 12.80 | 0.00 | 15.9 | 84.0 | 0.1 | -2.90 | 2.29 | 0.76 | 0.82 | — | 12653 | 2088 | 10 | 0 | 149 | 0 | 0 | logfile |
✔ | 6JXR | 9895 | 2021-01-05 | 2019-04-24 | 3.7 | 3.95 | — | 3.9 | 0.007 | 1.02 | 0.0 | 0.06 | 10.83 | 0.01 | 2.273 | 5.82 | 0.74 | 7.2 | 92.6 | 0.2 | -3.45 | 0.69 | 0.78 | 2.74 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 13.24 | 0.00 | 2.175 | 10.13 | 0.00 | 6.3 | 93.6 | 0.1 | -0.02 | 2.52 | 0.67 | 0.79 | 2.58 | 8437 | 1073 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R6B | 4734 | 2021-01-05 | 2019-03-26 | 3.5 | 4.29 | 3.51 | 3.9 | 0.010 | 1.36 | 1.0 | 0.07 | 12.49 | 0.01 | 1.771 | 6.90 | 1.97 | 8.6 | 91.1 | 0.4 | -5.15 | 0.70 | 0.70 | 2.25 | 3.9 | 0.003 | 0.88 | 0.0 | 0.04 | 12.98 | 0.00 | 2.093 | 13.85 | 0.00 | 6.8 | 93.1 | 0.1 | 0.11 | 4.26 | 0.73 | 0.84 | 0.95 | 11416 | 1452 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MSM | 9230 | 2021-01-05 | 2018-10-16 | 3.2 | 3.50 | — | 3.7 | 0.012 | 1.58 | 1.0 | 0.22 | 13.97 | 0.01 | 1.955 | 7.53 | 0.39 | 4.2 | 95.8 | 0.0 | -2.75 | 0.53 | 0.75 | 2.57 | 3.7 | 0.003 | 0.77 | 0.0 | 0.07 | 14.25 | 0.00 | 2.007 | 6.36 | 0.00 | 2.8 | 97.2 | 0.0 | 0.93 | 0.77 | 0.61 | 0.82 | 2.50 | 9703 | 1181 | 3 | 0 | 27 | 0 | 0 | logfile |
✔ | 6PYH | 20524 | 2021-01-05 | 2019-07-29 | 4.3 | 4.52 | — | 4.3 | 0.016 | 1.05 | 0.0 | 0.05 | 14.64 | 0.01 | 2.079 | 28.13 | 0.55 | 18.1 | 81.6 | 0.2 | -5.21 | 0.84 | 0.83 | — | 4.3 | 0.003 | 0.64 | 0.0 | 0.04 | 13.59 | 0.00 | 2.032 | 13.35 | 0.00 | 7.9 | 92.0 | 0.1 | -2.27 | 0.69 | 0.83 | 0.81 | — | 13187 | 1648 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oT0 | 20190 | 2021-01-05 | 2019-05-02 | 3.84 | 4.10 | — | 4.4 | 0.019 | 1.34 | 0.0 | 0.07 | 14.65 | 0.01 | 2.191 | 3.15 | 0.79 | 6.3 | 93.7 | 0.0 | -3.15 | 0.53 | 0.75 | 0.80 | 4.4 | 0.004 | 0.77 | 0.0 | 0.04 | 14.16 | 0.00 | 2.044 | 19.09 | 0.09 | 8.0 | 92.0 | 0.0 | -1.57 | 1.35 | 0.56 | 0.78 | 0.95 | 10572 | 1345 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 5ooF | 3839 | 2021-01-05 | 2017-08-07 | 3.4 | 3.53 | 3.41 | 3.5 | 0.015 | 1.54 | 0.0 | 0.08 | 11.80 | 0.02 | 2.010 | 2.86 | 0.00 | 6.3 | 91.0 | 2.7 | -1.40 | 0.71 | 0.85 | 2.69 | 3.5 | 0.007 | 0.79 | 0.0 | 0.05 | 13.83 | 0.00 | 2.004 | 8.67 | 0.00 | 4.3 | 95.1 | 0.5 | -0.19 | 2.16 | 0.70 | 0.86 | 2.58 | 14640 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6RQJ | 4983 | 2021-01-05 | 2019-05-15 | 3.5 | 4.14 | 3.49 | 3.7 | 0.006 | 0.74 | 0.0 | 0.11 | 14.34 | 0.00 | 2.041 | 10.88 | 0.06 | 6.9 | 92.9 | 0.2 | -4.28 | 0.84 | 0.75 | 2.30 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 13.59 | 0.00 | 2.180 | 9.84 | 0.06 | 5.4 | 94.6 | 0.0 | -0.66 | 0.54 | 0.89 | 0.85 | 2.25 | 14971 | 1899 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6R69 | 4733 | 2021-01-05 | 2019-03-26 | 3.65 | 4.14 | 3.57 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 14.42 | 0.01 | 2.191 | 12.95 | 0.15 | 9.8 | 89.8 | 0.4 | -3.99 | 0.75 | 0.76 | 0.73 | 3.8 | 0.003 | 0.81 | 0.0 | 0.04 | 13.73 | 0.01 | 2.145 | 11.95 | 0.07 | 7.3 | 92.7 | 0.0 | 0.61 | 0.94 | 0.76 | 0.81 | 0.97 | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RZB | 10061 | 2021-01-05 | 2019-06-13 | 4.1 | 4.19 | 3.09 | 4.2 | 0.014 | 1.87 | 5.0 | 0.12 | 17.68 | 0.01 | 2.096 | 9.24 | 5.37 | 4.2 | 95.5 | 0.3 | -2.81 | 0.68 | 0.84 | — | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.66 | 0.00 | 1.965 | 15.57 | 0.00 | 2.5 | 97.5 | 0.0 | 0.19 | 1.48 | 0.68 | 0.82 | — | 8001 | 1001 | 5 | 1 | 3 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2021-01-05 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 7.82 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.4 | 0.006 | 0.80 | 0.0 | 0.05 | 14.46 | 0.00 | 2.270 | 6.57 | 0.25 | 6.7 | 93.3 | 0.0 | -3.47 | 3.76 | 0.37 | 0.77 | 3.84 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oGZ | 20060 | 2021-01-05 | 2019-04-03 | 3.6 | 3.85 | — | 3.8 | 0.008 | 0.90 | 0.0 | 0.06 | 15.78 | 0.01 | 2.244 | 5.40 | 0.17 | 4.2 | 95.8 | 0.0 | -5.51 | 0.47 | 0.86 | 2.42 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 14.83 | 0.00 | 2.160 | 8.92 | 0.08 | 3.4 | 96.6 | 0.0 | -1.97 | 1.44 | 0.46 | 0.85 | 2.32 | 74962 | 9081 | 14 | 35 | 2 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2021-01-05 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.013 | 1.36 | 0.0 | 0.07 | 9.02 | 0.01 | 2.250 | 16.45 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.003 | 0.76 | 0.0 | 0.04 | 12.02 | 0.00 | 2.123 | 16.91 | 0.00 | 4.7 | 95.3 | 0.0 | 0.57 | 1.28 | 0.70 | 0.77 | 0.37 | 12705 | 1685 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 5o09 | 3726 | 2021-01-05 | 2017-05-16 | 3.6 | 3.66 | — | 3.7 | 0.014 | 1.49 | 32.0 | 0.10 | 13.27 | 0.01 | 0.180 | 18.36 | 1.36 | 6.3 | 92.8 | 0.8 | -4.52 | 0.53 | 0.60 | 0.71 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 14.14 | 0.00 | 2.093 | 19.01 | 0.03 | 5.5 | 94.5 | 0.0 | -0.83 | 1.68 | 0.60 | 0.74 | 1.49 | 67424 | 8648 | 40 | 16 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2021-01-05 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.04 | 6.14 | 0.00 | 2.319 | 9.28 | 0.00 | 17.9 | 82.1 | 0.0 | -2.45 | 1.69 | 0.82 | 0.76 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RZA | 10060 | 2021-01-05 | 2019-06-13 | 4.5 | 4.56 | 4.30 | 4.5 | 0.014 | 1.87 | 16.0 | 0.12 | 17.50 | 0.01 | 2.089 | 9.29 | 6.90 | 4.4 | 94.9 | 0.6 | -2.20 | 0.60 | 0.71 | — | 4.5 | 0.014 | 0.83 | 0.0 | 0.05 | 15.03 | 0.01 | 1.835 | 26.72 | 0.06 | 6.5 | 93.5 | 0.1 | -0.94 | 2.62 | 0.60 | 0.71 | — | 14908 | 1867 | 9 | 2 | 6 | 0 | 0 | logfile |
✔ | 5ooE | 3838 | 2021-01-05 | 2017-08-07 | 3.6 | 3.72 | 3.50 | 3.7 | 0.016 | 1.60 | 0.0 | 0.07 | 11.01 | 0.02 | 1.939 | 3.24 | 0.00 | 4.8 | 93.2 | 2.0 | -1.39 | 0.68 | 0.85 | 2.69 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 13.43 | 0.00 | 2.065 | 9.27 | 0.00 | 3.3 | 96.7 | 0.0 | 0.75 | 2.67 | 0.68 | 0.85 | 2.85 | 14310 | 1810 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2021-01-05 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.015 | 1.30 | 0.0 | 0.41 | 10.07 | 0.01 | 2.134 | 18.84 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.22 | 0.0 | 0.13 | 12.50 | 0.00 | 2.177 | 16.38 | 0.00 | 3.1 | 96.9 | 0.0 | 0.39 | 1.83 | 0.72 | 0.81 | 1.19 | 13865 | 1710 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2021-01-05 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.010 | 0.87 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.31 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 12.76 | 0.00 | 2.010 | 8.82 | 0.00 | 5.1 | 94.9 | 0.0 | -0.02 | 1.38 | 0.32 | 0.81 | 1.42 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6E7B | 8997 | 2021-01-05 | 2018-07-25 | 3.5 | 3.67 | 3.28 | 3.7 | 0.008 | 0.79 | 0.0 | 0.04 | 11.53 | 0.00 | 2.009 | 5.71 | 0.14 | 6.5 | 93.5 | 0.0 | -4.13 | 0.56 | 0.76 | 2.80 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 13.51 | 0.00 | 2.002 | 15.77 | 0.00 | 3.4 | 96.6 | 0.0 | -1.02 | 0.98 | 0.57 | 0.79 | 2.44 | 6774 | 854 | 4 | 0 | 4 | 0 | 0 | logfile |