Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JC2	3245	2021-08-07	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.028	2.38	2.0	0.05	17.84	0.00	1.835	21.05	0.00	5.3	94.0	0.6	-1.16	3.32	0.24	0.53	1.43	3911	482	4	0	32	0	0	logfile
✔	6NT5	0502	2021-08-07	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.005	0.71	0.0	0.04	12.83	0.00	2.215	10.35	0.00	3.8	96.2	0.0	1.30	1.19	0.74	0.83	—	4586	584	2	0	0	0	0	logfile
✔	6UAN	20708	2021-08-07	2019-09-11	3.9	4.03	—	3.9	0.007	0.95	0.0	0.06	16.09	0.01	2.256	7.56	1.03	8.1	91.9	0.0	-5.36	0.76	0.80	1.99	3.9	0.004	0.77	0.0	0.04	17.19	0.00	2.215	13.25	0.64	5.4	94.6	0.0	-1.25	1.25	0.76	0.78	1.31	7685	1007	4	0	0	0	0	logfile
✔	6JBH	9790	2021-08-07	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.97	0.0	0.05	16.25	0.00	2.141	14.20	0.74	15.9	84.1	0.0	-2.40	1.02	0.68	0.81	1.94	8592	1062	4	0	0	0	0	logfile
✔	6A69	6987	2021-08-07	2018-06-27	4.11	4.21	—	4.1	0.011	1.49	0.0	0.07	11.85	0.01	2.275	7.45	1.81	13.5	86.4	0.1	-4.69	0.61	0.81	—	4.2	0.004	0.80	0.0	0.04	12.74	0.01	2.247	12.54	0.12	9.1	90.8	0.1	-1.03	0.90	0.60	0.80	—	7851	1038	2	0	1	0	0	logfile
✔	6XWR	10636	2021-08-07	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	10.98	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	3.7	0.004	0.70	0.0	0.04	13.91	0.01	2.194	11.59	0.20	3.1	96.9	0.0	1.34	1.15	0.72	0.85	1.44	9564	1278	3	0	0	0	0	logfile
✔	6PW9	20501	2021-08-07	2019-07-22	4.03	4.12	—	4.1	0.007	1.20	0.0	0.06	13.12	0.01	1.781	6.47	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.004	0.83	0.0	0.05	14.08	0.01	2.187	15.67	0.11	3.9	96.1	0.0	-1.17	2.51	0.74	0.75	—	8836	1075	5	0	3	0	0	logfile
✔	6JBJ	9791	2021-08-07	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.53	0.00	9.1	90.9	0.0	-6.19	0.65	0.82	2.03	3.7	0.005	0.79	0.0	0.04	17.99	0.01	2.060	17.86	0.59	8.4	91.6	0.0	-1.65	1.21	0.65	0.82	1.27	9166	1130	4	0	2	0	0	logfile
✔	6QNU	4609	2021-08-07	2019-02-12	3.8	3.99	—	3.9	0.004	0.91	0.0	0.06	13.91	0.01	2.324	3.68	0.61	10.0	90.0	0.0	-4.05	0.77	0.81	2.85	3.9	0.003	0.66	0.0	0.05	16.15	0.00	2.171	10.40	0.49	8.8	91.2	0.0	-2.43	1.64	0.77	0.81	2.64	7250	920	5	0	0	0	0	logfile
✔	6QNT	4608	2021-08-07	2019-02-12	3.5	3.70	—	3.7	0.004	0.85	0.0	0.05	13.95	0.01	2.329	2.96	0.15	7.7	92.3	0.0	-4.25	0.77	0.83	3.32	3.7	0.003	0.67	0.0	0.04	15.59	0.00	2.092	9.94	0.62	5.5	94.5	0.0	-1.89	0.55	0.74	0.82	3.01	5774	733	4	0	0	0	0	logfile
✔	6oSM	20186	2021-08-07	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.22	0.0	0.07	15.32	0.00	2.228	25.45	1.46	28.3	71.7	0.0	-5.24	3.40	0.45	0.75	2.88	4100	600	10	0	0	0	0	logfile
✔	6RVY	10018	2021-08-07	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.72	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.004	0.76	0.0	0.04	13.30	0.00	2.305	13.14	0.00	5.2	94.8	0.0	0.02	0.73	0.64	0.81	—	9627	1290	3	0	0	0	0	logfile
✔	6XWo	10633	2021-08-07	2020-01-24	3.39	4.01	—	3.8	0.006	0.69	0.0	0.04	13.23	0.01	2.167	9.83	0.00	6.0	94.0	0.0	-3.53	0.74	0.82	1.64	3.8	0.003	0.66	0.0	0.04	15.00	0.00	2.167	9.58	0.00	2.9	97.1	0.0	1.08	1.17	0.73	0.85	0.96	9555	1281	3	0	0	0	0	logfile
✔	6XWN	10632	2021-08-07	2020-01-24	3.47	4.19	—	3.9	0.004	0.59	0.0	0.04	15.67	0.00	2.121	10.96	8.00	3.3	96.7	0.0	-2.83	0.70	0.77	1.38	3.9	0.003	0.65	0.0	0.04	15.73	0.00	2.159	11.42	0.10	2.2	97.8	0.0	1.86	0.60	0.72	0.85	0.77	9547	1276	5	0	2	0	0	logfile
✔	6RVX	10016	2021-08-07	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.008	1.05	0.0	0.04	15.47	0.01	2.171	12.08	0.10	4.9	95.1	0.0	-1.28	1.13	0.64	0.80	0.88	9627	1290	3	0	0	0	0	logfile
✔	6NF6	9361	2021-08-07	2018-12-18	3.32	3.42	—	3.4	0.020	1.58	0.0	0.22	16.56	0.01	2.309	4.98	0.00	4.5	95.2	0.3	-2.74	0.54	0.79	2.76	3.4	0.003	0.60	0.0	0.04	16.63	0.00	2.141	13.91	0.28	4.9	95.1	0.0	2.46	0.58	0.56	0.80	2.34	6598	822	4	0	2	0	0	logfile
✔	6MGV	9112	2021-08-07	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.63	0.0	0.04	14.03	0.01	2.116	7.27	0.28	3.3	96.7	0.0	1.51	2.13	0.69	0.84	2.65	10150	1268	2	0	0	0	0	logfile
✔	5UZ7	8623	2021-08-07	2017-02-24	4.1	4.03	—	4.0	0.008	1.17	0.0	0.06	11.04	0.01	2.267	7.69	0.37	4.4	95.6	0.0	-2.30	0.64	0.75	—	4.0	0.003	0.76	0.0	0.04	13.71	0.00	2.213	14.45	0.12	4.9	95.1	0.0	-0.23	1.43	0.67	0.78	—	7643	974	5	0	0	0	0	logfile
✔	6Ni2	9375	2021-08-07	2018-12-26	4.0	4.38	—	4.1	0.009	1.31	0.0	0.07	10.25	0.01	2.245	6.60	0.00	6.7	93.1	0.1	-1.50	0.75	0.71	—	4.1	0.004	0.78	0.0	0.04	15.32	0.01	2.198	13.20	0.35	5.3	94.7	0.0	-0.15	1.41	0.75	0.72	—	5381	704	5	0	0	0	0	logfile
✔	6KKU	0703	2021-08-07	2019-07-27	3.5	3.59	—	3.6	0.009	1.06	0.0	0.06	10.69	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.68	0.0	0.04	14.56	0.00	2.211	6.35	0.45	2.4	97.6	0.0	1.33	1.31	0.61	0.82	1.48	8412	1074	4	0	20	0	0	logfile

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