Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o5P	3749	2021-05-01	2017-06-02	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	355320	44820	300	0	60	0	0	logfile
✔	6MZi	9055	2021-05-02	2018-11-05	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	360060	46080	240	0	0	0	0	logfile
✔	6Y97	10733	2021-05-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.72	0.0	0.04	13.37	0.01	2.110	18.44	0.21	6.8	93.2	0.0	0.43	1.27	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6XDG	22137	2021-05-03	2020-06-10	3.9	4.70	—	4.4	0.004	0.68	0.0	0.04	12.89	0.00	2.127	18.92	0.00	9.8	89.8	0.4	-3.87	0.86	0.76	1.61	4.4	0.003	0.79	0.0	0.04	15.61	0.01	2.160	16.38	0.45	7.5	92.2	0.3	-1.71	0.76	0.87	0.78	1.10	8004	1043	6	0	4	0	0	logfile
✘	6XQN	22290	2021-05-03	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.69	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9433	1290	10	0	1	0	0	logfile
✔	6WYJ	21966	2021-05-03	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.58	0.0	0.04	14.64	0.00	2.306	4.76	0.64	1.5	98.5	0.0	2.31	1.19	0.62	0.80	1.59	2949	398	1	0	0	0	0	logfile
✔	6WB2	21585	2021-05-03	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.65	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.53	0.0	0.04	11.45	0.00	2.201	10.46	0.17	3.8	96.2	0.0	-0.04	0.66	0.87	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6WAZ	21582	2021-05-03	2020-03-26	4.1	4.33	—	4.2	0.004	0.80	0.0	0.06	14.85	0.01	1.931	9.92	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	14.26	0.00	2.193	9.92	0.00	6.6	93.4	0.0	-0.98	1.32	0.83	0.84	—	8537	955	4	54	0	0	0	logfile
✔	6VMS	21243	2021-05-03	2020-01-28	3.8	3.48	—	3.7	0.023	0.96	0.0	0.09	11.06	0.00	2.082	5.60	0.00	2.3	97.7	0.0	-0.27	0.57	0.71	1.53	3.6	0.004	0.89	0.0	0.04	15.99	0.01	2.130	13.40	0.10	4.2	95.8	0.0	0.37	1.32	0.65	0.85	2.20	8953	1135	5	0	1	0	0	logfile
✘	6WTi	21897	2021-05-03	2020-05-02	2.38	2.42	—	2.5	0.009	1.16	5.0	0.07	18.54	0.01	1.179	8.72	11.79	4.6	95.3	0.1	-3.48	0.60	0.74	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9980	1207	8	0	14	0	0	logfile
✔	6VZ1	21481	2021-05-03	2020-02-27	3.2	3.35	—	3.4	0.016	1.51	0.0	0.06	19.74	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.67	0.0	0.04	17.39	0.00	2.179	8.30	0.14	5.3	94.7	0.0	-0.55	0.99	0.57	0.84	2.37	7112	822	4	0	6	0	0	logfile
✔	6NTS	0510	2021-05-03	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.28	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.41	0.00	1.738	7.03	0.00	2.5	97.5	0.0	0.88	2.54	0.92	0.84	1.32	9956	1240	5	0	3	0	0	logfile
✔	6WCZ	21618	2021-05-03	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.55	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.003	0.76	0.0	0.04	15.24	0.01	2.015	15.82	0.47	7.0	93.0	0.0	-1.20	1.77	0.83	0.77	—	9894	1231	2	0	2	0	0	logfile
✔	6Y9A	10734	2021-05-03	2020-03-06	4.2	5.61	—	5.7	0.004	0.82	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.45	—	5.6	0.003	0.79	0.0	0.05	13.42	0.01	2.175	17.52	0.00	5.9	94.1	0.0	-0.14	1.50	0.56	0.67	—	5948	776	4	0	0	0	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	6TQF	10550	2021-05-03	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.004	0.61	0.0	0.04	15.93	0.00	1.979	2.48	0.09	3.6	96.4	0.0	-3.82	0.38	0.73	0.90	2.78	10426	1268	4	0	14	0	0	logfile
✘	6VYi	21461	2021-05-03	2020-02-26	3.0	3.28	—	3.2	0.012	1.20	0.0	0.05	18.80	0.00	2.157	10.51	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6916	812	4	0	4	0	0	logfile
✔	6P2J	20238	2021-05-03	2019-05-21	3.0	3.34	—	3.5	0.017	2.24	7.0	0.12	15.76	0.02	2.508	3.45	2.05	6.1	93.1	0.9	-3.61	0.52	0.72	2.73	3.4	0.003	0.75	0.0	0.04	17.29	0.01	2.210	9.05	3.15	5.8	94.2	0.0	0.48	0.75	0.54	0.75	1.70	7015	816	4	0	2	0	0	logfile
✔	6TQE	10549	2021-05-03	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.60	0.00	2.026	4.71	0.00	3.6	96.4	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	6Y3Y	10676	2021-05-03	2020-02-19	3.39	3.74	3.39	3.7	0.007	0.93	0.0	0.06	9.64	0.01	2.297	4.49	0.33	10.5	89.5	0.0	-4.44	0.80	0.83	4.70	3.7	0.003	0.65	0.0	0.05	12.88	0.00	2.220	11.72	0.33	8.6	91.4	0.0	-2.04	1.54	0.81	0.85	3.92	5854	664	12	0	34	0	0	logfile

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