Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o1o	0454	2021-05-04	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.80	0.0	0.07	14.08	0.00	1.992	33.13	0.00	0.0	0.0	0.0	—	1.72	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6UET	20756	2021-05-03	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	23.04	0.01	1.754	50.46	0.00	0.0	0.0	0.0	—	0.81	0.64	0.78	—	3869	0	1	119	1	0	1291	logfile
✔	6PoM	20416	2021-05-03	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.009	1.22	0.0	0.06	21.37	0.01	1.941	56.69	0.00	0.0	0.0	0.0	—	1.76	0.72	0.79	—	4937	0	2	230	0	0	0	logfile
✔	6X64	22069	2021-05-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.010	1.26	0.0	0.05	5.50	0.00	2.101	11.47	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6oEH	20020	2021-05-06	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.6	0.007	1.05	0.0	0.04	5.10	0.00	2.207	12.83	0.00	0.0	0.0	0.0	—	0.56	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6LHV	0900	2021-05-04	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.60	—	4.4	0.009	1.32	0.0	0.04	6.43	0.00	2.066	51.11	0.00	0.0	0.0	0.0	—	3.59	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6X5i	22051	2021-05-03	2020-05-26	4.3	4.27	—	4.0	0.061	2.86	210.0	0.20	32.25	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.56	210.0	0.12	26.72	0.00	1.559	66.82	0.00	0.0	0.0	0.0	—	3.36	0.68	0.74	—	4480	70	70	0	280	0	0	logfile
✔	4UQ8	2676	2021-05-05	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.93	0.00	2.133	43.42	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile
✔	6oEF	20020	2021-05-07	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.87	0.00	2.195	7.67	0.00	0.0	0.0	0.0	—	0.60	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6LHW	0901	2021-05-04	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.51	0.00	2.045	44.59	0.00	0.0	0.0	0.0	—	3.27	0.81	0.79	—	7644	0	3	0	1541	0	0	logfile
✔	6UES	20755	2021-05-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.88	0.0	0.04	21.27	0.01	1.781	36.95	0.00	0.0	0.0	0.0	—	1.34	0.88	0.82	—	3842	0	1	119	0	0	1291	logfile
✔	6QYZ	4680	2021-05-03	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	4.6	0.006	1.16	0.0	0.07	28.45	0.01	2.047	73.66	0.00	0.0	0.0	0.0	—	4.53	0.71	0.60	—	7300	0	5	345	0	0	0	logfile
✔	5G2Y	3332	2021-05-04	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.6	0.007	1.00	0.0	0.05	24.02	0.01	1.984	73.74	0.00	0.0	0.0	0.0	—	3.29	0.88	0.77	—	13494	0	1	630	0	0	0	logfile
✔	6oDJ	20021	2021-05-05	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.96	0.00	2.119	11.87	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	3J2P	5499	2021-05-03	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.87	0.0	0.04	18.05	0.01	1.834	70.02	0.73	19.0	77.8	3.2	-4.20	0.95	0.39	0.74	0.80	9890	1134	6	0	6	0	1086	logfile
✘	5A9Z	6396	2021-05-06	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	196.22	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150547	6671	58	4527	131	0	0	logfile
✔	7DA4	30622	2021-05-03	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	77.78	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	6.9	0.003	0.88	0.0	0.04	11.26	0.00	2.209	21.21	0.00	26.7	73.3	0.0	-6.49	3.06	0.43	0.63	—	507	66	3	0	0	0	0	logfile
✔	6o9J	0661	2021-05-04	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.009	1.07	5.0	0.05	17.69	0.01	1.337	31.62	1.73	24.3	73.0	2.7	-4.71	2.20	0.80	0.77	0.44	142682	5731	53	4564	0	0	0	logfile
✔	3J06	5185	2021-05-07	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	78.71	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.004	0.88	0.0	0.04	20.24	0.01	2.162	15.98	1.08	7.7	90.8	1.4	-2.88	1.29	0.56	0.80	2.03	62916	7595	98	147	0	0	0	logfile
✔	6oSM	20186	2021-05-03	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.006	1.13	0.0	0.07	15.86	0.00	2.227	22.22	1.22	26.7	73.3	0.0	-5.09	3.40	0.44	0.74	2.33	4100	600	10	0	0	0	0	logfile

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