Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o1o	0454	2021-01-06	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.79	0.0	0.07	14.18	0.00	1.994	33.65	0.00	0.0	0.0	0.0	—	1.72	0.76	0.75	—	15193	0	14	66	2757	0	0	logfile
✔	6PoM	20416	2021-01-05	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.79	0.01	1.928	59.11	0.00	0.0	0.0	0.0	—	1.80	0.74	0.80	—	4937	0	2	230	0	0	0	logfile
✔	6QYZ	4680	2021-01-05	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.16	0.0	0.07	28.21	0.01	2.052	71.65	0.00	0.0	0.0	0.0	—	4.55	0.73	0.67	—	7300	0	5	345	0	0	0	logfile
✔	6UET	20756	2021-01-05	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.97	0.0	0.05	22.88	0.01	1.754	51.75	0.00	0.0	0.0	0.0	—	0.81	0.64	0.78	—	3869	0	1	119	1	0	1291	logfile
✔	4UQ8	2676	2021-01-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.52	0.0	0.41	5.92	0.00	2.134	43.68	0.00	0.0	0.0	0.0	—	2.30	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6oEH	20020	2021-01-07	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.10	0.00	2.207	12.93	0.00	0.0	0.0	0.0	—	0.57	0.37	0.76	—	32900	0	14	0	6580	0	0	logfile
✔	5G2Y	3332	2021-01-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.00	0.0	0.05	23.93	0.01	1.967	73.15	0.00	0.0	0.0	0.0	—	3.27	0.88	0.77	—	13494	0	1	630	0	0	0	logfile
✔	6LHV	0900	2021-01-05	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.60	—	4.4	0.009	1.32	0.0	0.04	6.42	0.00	2.069	50.52	0.00	0.0	0.0	0.0	—	3.59	0.85	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6UES	20755	2021-01-05	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.89	0.0	0.04	21.25	0.01	1.834	37.21	0.00	0.0	0.0	0.0	—	1.33	0.87	0.82	—	3842	0	1	119	0	0	1291	logfile
✔	6oEF	20020	2021-01-07	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.88	0.00	2.195	7.70	0.00	0.0	0.0	0.0	—	0.60	0.48	0.79	—	51240	0	14	0	10248	0	0	logfile
✔	6oDJ	20021	2021-01-06	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.95	0.00	2.065	11.87	0.00	0.0	0.0	0.0	—	0.66	0.81	0.84	—	25415	0	17	0	5083	0	0	logfile
✔	6LHW	0901	2021-01-05	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.7	0.007	1.25	0.0	0.04	6.28	0.00	2.051	40.84	0.00	0.0	0.0	0.0	—	3.27	0.83	0.79	—	7644	0	3	0	1541	0	0	logfile
✔	6X5i	22051	2021-01-05	2020-05-26	4.3	4.27	—	4.0	0.061	3.17	210.0	0.20	28.86	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.57	210.0	0.14	27.11	0.00	1.555	68.00	0.00	0.0	0.0	0.0	—	4.23	0.68	0.74	—	4480	70	70	0	280	0	0	logfile
✔	3J2P	5499	2021-01-05	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.4	0.003	0.85	0.0	0.04	15.17	0.00	1.891	70.25	0.10	18.4	78.3	3.3	-3.88	1.04	0.39	0.71	1.67	9890	1134	6	0	6	0	1086	logfile
✘	5A9Z	6396	2021-01-13	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	196.22	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150547	6671	58	4527	131	0	0	logfile
✔	6o9J	0661	2021-01-11	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.009	1.11	3.0	0.05	16.92	0.01	1.174	33.19	0.11	24.0	73.2	2.8	-4.72	2.20	0.80	0.77	0.63	142682	5731	53	4564	0	0	0	logfile
✔	3J06	5185	2021-01-08	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	78.71	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.003	0.81	0.0	0.04	17.73	0.01	2.219	15.71	0.84	5.4	92.7	1.9	-2.47	1.60	0.54	0.75	2.52	62916	7595	98	147	0	0	0	logfile
✔	6oSM	20186	2021-01-05	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.006	1.14	0.0	0.06	14.13	0.00	2.238	20.19	0.00	25.3	74.7	0.0	-4.55	3.39	0.48	0.74	2.99	4100	600	10	0	0	0	0	logfile
✔	6RoW	4975	2021-01-07	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	45.07	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.003	0.67	0.0	0.04	13.63	0.00	1.911	12.50	0.05	12.4	87.4	0.1	-2.08	1.51	0.82	0.73	—	43049	3129	7	0	0	0	20156	logfile
✔	3LoS	5137	2021-01-08	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.14	0.0	0.05	15.82	0.01	2.101	22.74	0.00	19.0	77.1	3.9	-4.25	1.46	0.60	0.52	—	63712	8512	16	0	0	0	0	logfile

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