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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5MM2 | 3528 | 2021-01-05 | 2016-12-08 | 2.7 | 12.53 | 1.51 | — | 0.011 | 1.29 | 0.0 | 0.07 | 10.78 | 0.01 | 1.325 | 19.49 | 0.54 | 12.1 | 87.0 | 0.8 | -3.96 | -0.08 | -0.03 | 0.63 | — | 0.002 | 0.70 | 0.0 | 0.05 | 10.54 | 0.00 | 2.255 | 7.20 | 0.00 | 7.2 | 92.7 | 0.1 | -1.03 | 1.31 | -0.07 | -0.03 | 0.96 | 6605 | 854 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MiX | 9132 | 2021-01-07 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.71 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | 4.6 | 0.004 | 0.83 | 0.0 | 0.04 | 14.64 | 0.01 | 2.076 | 13.90 | 0.00 | 11.8 | 88.2 | 0.0 | -2.41 | 2.43 | 0.00 | 0.09 | 0.22 | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5AJ0 | 2875 | 2021-01-13 | 2015-02-19 | 3.5 | 11.12 | — | — | 0.011 | 1.61 | 31.0 | 0.09 | 16.14 | 0.01 | 0.414 | 42.35 | 8.00 | 5.7 | 89.8 | 4.5 | 0.77 | 0.00 | 0.00 | 0.09 | — | 0.002 | 0.49 | 0.0 | 0.03 | 14.29 | 0.00 | 2.038 | 10.20 | 0.00 | 5.8 | 93.5 | 0.7 | 0.52 | 1.52 | 0.00 | 0.00 | 0.13 | 218559 | 11738 | 106 | 5776 | 355 | 0 | 0 | logfile |
✔ | 3JB8 | 6382 | 2021-01-16 | 2015-08-04 | 3.6 | 3.59 | — | 96.0 | 0.011 | 1.54 | 0.0 | 0.07 | 11.99 | 0.01 | 0.235 | 173.86 | 4.85 | 9.9 | 87.9 | 2.2 | -2.92 | 0.00 | 0.00 | 0.34 | 30.0 | 0.025 | 1.67 | 154.0 | 0.16 | 12.95 | 0.01 | 1.633 | 54.35 | 0.00 | 12.8 | 86.5 | 0.7 | -2.95 | 3.26 | 0.00 | 0.00 | 0.75 | 245880 | 33000 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X1G | 6701 | 2021-01-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | 0.002 | 0.62 | 0.0 | 0.03 | 3.04 | 0.00 | 2.649 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | 4.51 | 3.37 | 0.01 | 0.14 | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2021-01-05 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 20.10 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.4 | 0.003 | 0.60 | 0.0 | 0.03 | 16.25 | 0.00 | 2.016 | 10.05 | 0.00 | 5.2 | 94.8 | 0.0 | 3.46 | 2.63 | 0.02 | -0.08 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 5MSH | 3565 | 2021-01-05 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.57 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 2.36 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.7 | 0.010 | 1.16 | 0.0 | 0.05 | 13.51 | 0.01 | 2.172 | 17.02 | 0.00 | 8.8 | 91.2 | 0.0 | -1.05 | 2.75 | 0.05 | 0.18 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KKR | 0701 | 2021-01-05 | 2019-07-27 | 2.9 | 2.91 | — | 20.0 | 0.008 | 1.10 | 0.0 | 0.06 | 10.85 | 0.01 | 2.348 | 3.23 | 0.23 | 3.9 | 96.1 | 0.0 | -3.53 | 0.05 | 0.00 | -0.07 | 2.8 | 0.003 | 0.65 | 0.0 | 0.04 | 10.68 | 0.00 | 2.160 | 8.87 | 0.00 | 3.3 | 96.7 | 0.0 | 1.24 | 1.65 | 0.11 | 0.09 | -0.21 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6EK0 | 3883 | 2021-01-13 | 2017-09-24 | 2.9 | 3.27 | — | 40.0 | 0.012 | 1.12 | 0.0 | 0.06 | 16.25 | 0.03 | 0.883 | 4.05 | 0.81 | 9.4 | 90.4 | 0.3 | -5.00 | 0.02 | 0.00 | 0.01 | 3.2 | 0.005 | 1.05 | 0.0 | 0.05 | 18.03 | 0.01 | 1.068 | 23.79 | 0.07 | 12.3 | 87.6 | 0.1 | -2.99 | 1.87 | 0.15 | 0.21 | 0.23 | 219596 | 11719 | 128 | 5861 | 415 | 61 | 0 | logfile |
✔ | 5YWP | 6855 | 2021-01-06 | 2017-11-29 | 4.6 | 5.26 | — | 20.0 | 0.005 | 0.98 | 0.0 | 0.05 | 9.48 | 0.01 | 2.023 | 47.18 | 0.00 | 7.3 | 92.1 | 0.6 | -3.63 | 0.12 | 0.02 | — | 48.0 | 0.003 | 0.75 | 0.0 | 0.04 | 10.84 | 0.00 | 2.168 | 13.02 | 0.00 | 4.1 | 95.4 | 0.4 | -0.43 | 1.89 | 0.16 | 0.05 | — | 19561 | 2588 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2021-01-05 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 38.97 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.4 | 0.003 | 0.84 | 0.0 | 0.05 | 12.31 | 0.01 | 2.392 | 15.59 | 0.00 | 7.1 | 92.9 | 0.0 | -0.26 | 2.84 | 0.16 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KKT | 0702 | 2021-01-05 | 2019-07-27 | 2.9 | 2.94 | — | 7.1 | 0.010 | 1.16 | 0.0 | 0.06 | 10.98 | 0.01 | 2.343 | 4.23 | 0.34 | 3.6 | 96.4 | 0.0 | -3.62 | 0.12 | 0.00 | 0.17 | 2.7 | 0.003 | 0.73 | 0.0 | 0.04 | 11.08 | 0.00 | 2.084 | 11.69 | 0.00 | 4.9 | 95.1 | 0.0 | 0.32 | 0.95 | 0.18 | 0.12 | 0.54 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2021-01-05 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.22 | 1.0 | 0.07 | 17.30 | 0.01 | 2.284 | 6.58 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.35 | 0.00 | 2.075 | 10.70 | 0.00 | 7.2 | 92.8 | 0.0 | -1.74 | 1.38 | 0.19 | 0.59 | 1.46 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2021-01-05 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.35 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.002 | 0.58 | 0.0 | 0.04 | 11.45 | 0.00 | 2.353 | 4.14 | 0.00 | 2.3 | 97.7 | 0.0 | 0.55 | 2.91 | 0.21 | 0.79 | 3.78 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2021-01-06 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 18.34 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 15.93 | 0.00 | 2.186 | 7.43 | 0.00 | 3.8 | 96.2 | 0.0 | -0.56 | 0.72 | 0.21 | 0.83 | 3.19 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2021-01-08 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 2.00 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 19.39 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 12.83 | 0.00 | 2.086 | 15.16 | 0.04 | 7.2 | 92.0 | 0.9 | -1.13 | 1.92 | 0.22 | 0.27 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2021-01-05 | 2018-02-26 | 3.2 | 4.42 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 3.9 | 0.002 | 0.65 | 0.0 | 0.04 | 13.80 | 0.00 | 2.258 | 8.06 | 0.00 | 6.2 | 92.5 | 1.2 | -0.48 | 3.22 | 0.23 | 0.67 | 1.29 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 3JC2 | 3245 | 2021-01-05 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 17.88 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 13.72 | 0.00 | 2.128 | 9.13 | 0.00 | 7.2 | 91.9 | 0.9 | -0.90 | 3.33 | 0.23 | 0.47 | 1.41 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2021-01-07 | 2015-06-24 | 4.8 | 4.76 | — | 5.7 | 0.027 | 2.65 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 11.04 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.002 | 0.65 | 0.0 | 0.04 | 13.64 | 0.00 | 2.164 | 12.44 | 0.00 | 3.2 | 96.3 | 0.4 | -0.18 | 1.49 | 0.23 | 0.48 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2021-01-05 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 8.77 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.006 | 0.94 | 0.0 | 0.05 | 17.28 | 0.01 | 2.038 | 22.50 | 0.00 | 11.4 | 87.5 | 1.1 | -2.04 | 1.96 | 0.23 | 0.60 | 0.66 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |