Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2021-05-03	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.65	0.0	0.03	17.35	0.00	1.952	10.68	0.00	6.2	93.8	0.0	2.03	2.65	0.04	0.05	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2021-05-03	2017-01-04	4.25	3.96	—	20.0	0.014	1.57	0.0	0.07	9.56	0.01	2.323	2.36	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.73	0.0	0.05	12.88	0.01	2.202	14.07	0.00	8.1	91.9	0.0	-0.94	2.00	0.04	0.17	—	4287	551	2	0	0	0	0	logfile
✔	6KKR	0701	2021-05-03	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.70	0.0	0.04	12.46	0.00	2.166	9.75	1.70	3.5	96.5	0.0	0.80	1.66	0.11	0.10	0.21	8416	1074	4	0	24	0	0	logfile
✔	6EK0	3883	2021-05-13	2017-09-24	2.9	3.27	—	40.0	0.012	1.17	0.0	0.06	16.22	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.003	0.85	0.0	0.04	17.81	0.01	1.161	18.81	2.80	10.0	90.0	0.0	-2.46	2.06	0.13	0.18	-0.07	219596	11719	128	5861	415	61	0	logfile
✔	5YWP	6855	2021-05-04	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	40.0	0.003	0.72	0.0	0.04	10.94	0.00	2.115	12.74	0.00	4.0	95.6	0.4	-0.53	1.28	0.14	0.05	—	19561	2588	10	0	0	0	0	logfile
✔	5M5H	4155	2021-05-03	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.97	0.0	0.05	12.81	0.01	2.312	22.01	0.00	10.3	89.7	0.0	-1.07	2.79	0.15	0.15	—	1086	132	1	0	0	0	0	logfile
✔	6KKT	0702	2021-05-03	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.23	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	2.8	0.003	0.71	0.0	0.04	12.73	0.00	2.148	9.52	1.59	3.6	96.4	0.0	1.18	0.88	0.17	0.10	0.55	8416	1074	4	0	24	0	0	logfile
✔	7ASK	11895	2021-05-04	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.6	9.7	-6.07	0.17	0.51	—	4.3	0.015	1.17	2.0	0.05	15.48	0.01	2.032	18.82	0.00	17.4	80.8	1.7	-3.46	2.19	0.19	0.59	—	12285	1523	1	0	2	0	0	logfile
✔	6Z3T	11064	2021-05-03	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.85	1.0	0.07	17.42	0.01	2.284	6.58	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.09	0.0	0.04	18.48	0.00	2.287	10.42	2.41	7.9	92.1	0.0	-1.19	0.93	0.20	0.63	1.75	3608	441	4	0	21	0	0	logfile
✔	5TC1	8397	2021-05-04	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.61	0.0	0.04	17.00	0.00	2.147	7.57	1.16	4.8	95.2	0.0	-0.44	0.74	0.20	0.84	2.88	15393	1352	10	242	0	0	0	logfile
✔	3JAU	6366	2021-05-06	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.68	0.0	0.04	14.19	0.00	2.172	15.65	0.00	3.3	96.2	0.4	-0.13	1.45	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	3JBS	6478	2021-05-03	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.62	0.0	0.04	18.60	0.00	2.365	7.24	1.32	1.7	98.3	0.0	0.92	1.83	0.22	0.80	3.26	1401	175	1	0	0	0	0	logfile
✔	5A8L	3099	2021-05-04	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	1.00	0.0	0.05	18.32	0.01	2.008	23.69	2.09	12.9	86.3	0.8	-2.58	1.97	0.23	0.63	0.47	12264	624	9	347	0	0	0	logfile
✔	6KFK	9974	2021-05-07	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.87	0.0	0.05	13.11	0.00	2.083	19.62	0.01	9.4	89.6	1.0	-1.60	2.00	0.24	0.30	—	65076	8844	22	0	0	0	0	logfile
✔	6RED	4850	2021-05-06	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	28.0	0.004	0.72	0.0	0.04	15.84	0.01	1.893	15.59	1.88	4.3	95.6	0.1	-0.47	1.91	0.24	0.15	0.18	33899	4503	25	0	10	0	0	logfile
✔	7CHH	30374	2021-05-05	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.86	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.004	0.72	0.0	0.04	16.15	0.01	2.118	12.04	0.29	4.4	95.6	0.0	-1.09	1.55	0.24	0.15	0.40	29029	3704	17	0	41	0	0	logfile
✔	3JC2	3245	2021-05-03	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.007	1.00	0.0	0.04	17.15	0.01	2.128	14.08	0.24	7.2	91.9	0.9	-1.24	2.40	0.24	0.60	1.86	3911	482	4	0	32	0	0	logfile
✔	6FU8	4319	2021-05-03	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.74	0.0	0.04	15.61	0.00	2.157	15.40	0.00	10.0	88.8	1.2	-2.23	3.26	0.25	0.69	2.23	1364	82	1	0	0	0	711	logfile
✔	6SXo	10344	2021-05-04	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.69	0.00	2.122	10.12	0.58	3.7	96.3	0.0	-1.27	0.75	0.26	0.76	1.90	14894	973	8	326	0	0	0	logfile
✔	6X0U	21984	2021-05-03	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.42	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.004	0.68	0.0	0.04	17.99	0.01	2.223	7.50	0.58	3.7	96.3	0.0	0.64	0.87	0.26	0.78	2.48	3091	398	4	0	0	0	0	logfile

• Page 1 of 244
• next →