Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5MM2	3528	2021-01-05	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.49	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	0.002	0.70	0.0	0.05	10.54	0.00	2.255	7.20	0.00	7.2	92.7	0.1	-1.03	1.31	-0.07	-0.03	0.96	6605	854	3	0	0	0	0	logfile
✔	6MiX	9132	2021-01-07	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.71	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	4.6	0.004	0.83	0.0	0.04	14.64	0.01	2.076	13.90	0.00	11.8	88.2	0.0	-2.41	2.43	0.00	0.09	0.22	43120	5348	4	0	0	0	0	logfile
✔	5AJ0	2875	2021-01-13	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	0.002	0.49	0.0	0.03	14.29	0.00	2.038	10.20	0.00	5.8	93.5	0.7	0.52	1.52	0.00	0.00	0.13	218559	11738	106	5776	355	0	0	logfile
✔	3JB8	6382	2021-01-16	2015-08-04	3.6	3.59	—	96.0	0.011	1.54	0.0	0.07	11.99	0.01	0.235	173.86	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	30.0	0.025	1.67	154.0	0.16	12.95	0.01	1.633	54.35	0.00	12.8	86.5	0.7	-2.95	3.26	0.00	0.00	0.75	245880	33000	180	0	0	0	0	logfile
✔	5X1G	6701	2021-01-05	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	0.002	0.62	0.0	0.03	3.04	0.00	2.649	0.00	0.00	0.0	100.0	0.0	4.51	3.37	0.01	0.14	—	155	31	1	0	0	0	0	logfile
✔	5M6S	3451	2021-01-05	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.60	0.0	0.03	16.25	0.00	2.016	10.05	0.00	5.2	94.8	0.0	3.46	2.63	0.02	-0.08	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2021-01-05	2017-01-04	4.25	3.96	—	20.0	0.014	1.57	0.0	0.07	9.56	0.01	2.323	2.36	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.010	1.16	0.0	0.05	13.51	0.01	2.172	17.02	0.00	8.8	91.2	0.0	-1.05	2.75	0.05	0.18	—	4287	551	2	0	0	0	0	logfile
✔	6KKR	0701	2021-01-05	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.65	0.0	0.04	10.68	0.00	2.160	8.87	0.00	3.3	96.7	0.0	1.24	1.65	0.11	0.09	-0.21	8416	1074	4	0	24	0	0	logfile
✔	6EK0	3883	2021-01-13	2017-09-24	2.9	3.27	—	40.0	0.012	1.12	0.0	0.06	16.25	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.005	1.05	0.0	0.05	18.03	0.01	1.068	23.79	0.07	12.3	87.6	0.1	-2.99	1.87	0.15	0.21	0.23	219596	11719	128	5861	415	61	0	logfile
✔	5YWP	6855	2021-01-06	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	48.0	0.003	0.75	0.0	0.04	10.84	0.00	2.168	13.02	0.00	4.1	95.4	0.4	-0.43	1.89	0.16	0.05	—	19561	2588	10	0	0	0	0	logfile
✔	5M5H	4155	2021-01-05	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.4	0.003	0.84	0.0	0.05	12.31	0.01	2.392	15.59	0.00	7.1	92.9	0.0	-0.26	2.84	0.16	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6KKT	0702	2021-01-05	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.23	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	2.7	0.003	0.73	0.0	0.04	11.08	0.00	2.084	11.69	0.00	4.9	95.1	0.0	0.32	0.95	0.18	0.12	0.54	8416	1074	4	0	24	0	0	logfile
✔	6Z3T	11064	2021-01-05	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.22	1.0	0.07	17.30	0.01	2.284	6.58	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	0.72	0.0	0.04	15.35	0.00	2.075	10.70	0.00	7.2	92.8	0.0	-1.74	1.38	0.19	0.59	1.46	3608	441	4	0	21	0	0	logfile
✔	3JBS	6478	2021-01-05	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.002	0.58	0.0	0.04	11.45	0.00	2.353	4.14	0.00	2.3	97.7	0.0	0.55	2.91	0.21	0.79	3.78	1401	175	1	0	0	0	0	logfile
✔	5TC1	8397	2021-01-06	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.003	0.56	0.0	0.04	15.93	0.00	2.186	7.43	0.00	3.8	96.2	0.0	-0.56	0.72	0.21	0.83	3.19	15393	1352	10	242	0	0	0	logfile
✔	6KFK	9974	2021-01-08	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.003	0.78	0.0	0.04	12.83	0.00	2.086	15.16	0.04	7.2	92.0	0.9	-1.13	1.92	0.22	0.27	—	65076	8844	22	0	0	0	0	logfile
✔	6FU8	4319	2021-01-05	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	3.9	0.002	0.65	0.0	0.04	13.80	0.00	2.258	8.06	0.00	6.2	92.5	1.2	-0.48	3.22	0.23	0.67	1.29	1364	82	1	0	0	0	711	logfile
✔	3JC2	3245	2021-01-05	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.73	0.0	0.04	13.72	0.00	2.128	9.13	0.00	7.2	91.9	0.9	-0.90	3.33	0.23	0.47	1.41	3911	482	4	0	32	0	0	logfile
✔	3JAU	6366	2021-01-07	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.65	0.0	0.04	13.64	0.00	2.164	12.44	0.00	3.2	96.3	0.4	-0.18	1.49	0.23	0.48	—	114900	14700	180	0	0	0	0	logfile
✔	5A8L	3099	2021-01-05	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.006	0.94	0.0	0.05	17.28	0.01	2.038	22.50	0.00	11.4	87.5	1.1	-2.04	1.96	0.23	0.60	0.66	12264	624	9	347	0	0	0	logfile

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