Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2021-08-07	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.64	0.0	0.03	18.57	0.00	1.968	10.68	0.00	4.2	95.8	0.0	1.93	2.66	0.04	0.07	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2021-08-07	2017-01-04	4.25	3.96	—	20.0	0.014	1.57	0.0	0.07	9.56	0.01	2.323	2.36	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.009	1.39	0.0	0.05	14.14	0.01	2.117	18.91	0.00	7.0	92.8	0.2	-1.38	2.05	0.05	0.17	—	4287	551	2	0	0	0	0	logfile
✔	6EK0	3883	2021-08-18	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.004	0.85	1.0	0.04	17.77	0.01	1.187	16.66	2.54	8.5	91.4	0.0	-2.50	1.48	0.12	0.16	0.09	219596	11719	128	5861	415	61	0	logfile
✔	6KKR	0701	2021-08-07	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.69	0.0	0.04	12.81	0.00	2.153	10.40	2.27	3.4	96.6	0.0	0.87	1.66	0.12	0.11	-0.13	8416	1074	4	0	24	0	0	logfile
✔	5YWP	6855	2021-08-09	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	40.0	0.003	0.73	0.0	0.04	10.99	0.00	2.132	13.41	0.00	4.2	95.4	0.4	-0.71	1.30	0.13	0.03	—	19561	2588	10	0	0	0	0	logfile
✔	6KKT	0702	2021-08-07	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.23	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	20.0	0.012	1.28	0.0	0.04	12.32	0.00	1.528	11.69	1.25	2.9	97.1	0.0	0.60	0.59	0.14	0.05	0.53	8416	1074	4	0	24	0	0	logfile
✔	5M5H	4155	2021-08-07	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.93	0.0	0.05	12.47	0.01	2.287	16.05	0.00	7.9	92.1	0.0	-1.02	2.84	0.15	0.15	—	1086	132	1	0	0	0	0	logfile
✔	7ASK	11895	2021-08-08	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.6	9.7	-6.07	0.17	0.51	—	4.3	0.021	1.21	1.0	0.05	15.43	0.01	1.974	20.95	0.00	19.2	79.5	1.3	-3.38	2.20	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	7BHQ	12190	2021-08-08	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.33	0.00	3.0	97.0	0.0	1.03	0.20	0.47	0.97	3.0	0.017	1.53	1.0	0.04	17.16	0.01	1.631	24.30	0.12	4.1	95.9	0.0	0.27	0.90	0.20	0.45	1.17	7402	1010	5	0	0	0	0	logfile
✔	5TC1	8397	2021-08-08	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.005	0.63	0.0	0.04	17.04	0.00	2.182	7.25	0.45	5.4	94.6	0.0	-0.60	0.72	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	6Z3T	11064	2021-08-07	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.58	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.004	1.14	0.0	0.04	19.66	0.00	2.224	13.17	2.94	8.4	91.6	0.0	-1.78	0.98	0.21	0.65	1.10	3608	441	4	0	21	0	0	logfile
✔	3JAU	6366	2021-08-09	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.69	0.0	0.04	13.59	0.00	2.083	12.58	0.00	4.6	95.0	0.4	-0.68	1.47	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	3JBS	6478	2021-08-07	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.67	0.0	0.04	17.78	0.00	2.328	6.55	1.97	1.7	98.3	0.0	1.16	1.33	0.21	0.80	3.51	1401	175	1	0	0	0	0	logfile
✔	7CHH	30374	2021-08-10	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.86	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.4	0.009	0.98	1.0	0.05	16.08	0.01	2.074	14.32	0.06	5.4	94.6	0.0	-1.31	1.42	0.22	0.13	0.43	29029	3704	17	0	41	0	0	logfile
✔	5A8L	3099	2021-08-08	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.010	1.15	1.0	0.04	17.67	0.01	1.967	18.83	0.38	9.6	89.1	1.3	-2.56	1.91	0.23	0.62	0.31	12264	624	9	347	0	0	0	logfile
✔	3JC2	3245	2021-08-07	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.028	2.38	2.0	0.05	17.84	0.00	1.835	21.05	0.00	5.3	94.0	0.6	-1.16	3.32	0.24	0.53	1.43	3911	482	4	0	32	0	0	logfile
✔	6FU8	4319	2021-08-07	2018-02-26	3.2	4.42	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.73	0.0	0.04	15.97	0.00	2.217	11.73	0.00	10.0	88.8	1.2	-2.85	3.17	0.24	0.68	1.82	1364	82	1	0	0	0	711	logfile
✔	6FLQ	4275	2021-08-10	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	0.94	1.0	0.04	16.93	0.01	2.051	14.94	0.62	8.5	91.4	0.1	-1.49	2.13	0.25	0.20	-0.02	30201	3868	10	91	3	0	0	logfile
✔	6KFK	9974	2021-08-09	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.90	0.0	0.05	13.17	0.00	2.067	19.71	0.01	9.3	89.8	0.9	-1.76	2.41	0.25	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	6RED	4850	2021-08-10	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.99	0.0	0.05	16.22	0.01	1.891	20.83	2.47	4.9	95.0	0.1	-1.40	1.53	0.25	0.17	0.32	33899	4503	25	0	10	0	0	logfile

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