Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2023-08-09	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2023-08-09	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.003	0.76	0.0	0.05	12.62	0.01	2.155	14.78	0.00	6.1	93.8	0.2	-0.92	2.67	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	7UR5	26705	2023-08-09	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.83	0.0	0.04	20.54	0.01	2.027	14.87	0.00	0.0	0.0	0.0	—	1.86	0.08	0.65	—	5709	0	3	270	0	0	0	logfile
✔	7URi	26713	2023-08-09	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URM	26714	2023-08-09	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	5M5H	4155	2023-08-09	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7V66	31736	2023-08-22	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	5.1	0.004	0.76	0.0	0.04	15.44	0.00	2.197	20.43	1.35	4.9	95.1	0.0	2.55	1.19	0.16	0.14	-0.14	33216	4128	24	0	0	0	0	logfile
✔	8CK0	16688	2023-08-09	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.9	0.003	0.68	0.0	0.04	17.61	0.00	2.237	10.99	0.24	4.0	96.0	0.0	2.20	0.72	0.18	0.78	1.71	3762	478	1	0	0	0	0	logfile
✔	7ASK	11895	2023-08-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	8ACC	15346	2023-08-09	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	12.05	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.63	0.0	0.04	16.85	0.00	2.244	8.63	4.61	12.7	86.5	0.9	-1.63	0.68	0.20	0.83	3.15	1779	231	2	5	0	0	0	logfile
✔	8ACB	15345	2023-08-09	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	13.94	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.002	0.55	0.0	0.04	17.52	0.00	2.192	6.89	1.70	7.8	92.2	0.0	-0.42	1.25	0.20	0.83	3.65	1815	220	2	5	0	0	0	logfile
✔	3JBS	6478	2023-08-09	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	6Z3T	11064	2023-08-09	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.90	1.0	0.07	17.55	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.005	1.17	0.0	0.04	18.69	0.01	2.149	16.73	2.14	8.6	91.4	0.0	-2.15	0.93	0.21	0.66	0.77	3608	441	4	0	21	0	0	logfile
✔	7X34	32978	2023-08-09	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.2	0.005	0.85	0.0	0.04	20.14	0.00	2.077	35.35	0.00	5.1	94.9	0.0	0.09	0.71	0.21	0.78	1.18	2762	100	2	94	0	0	0	logfile
✔	5TC1	8397	2023-08-14	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.61	0.0	0.04	16.96	0.00	2.198	7.68	0.62	4.5	95.5	0.0	-0.49	0.70	0.21	0.84	2.89	15393	1352	10	242	0	0	0	logfile
✔	7CHH	30374	2023-08-20	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.16	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.2	0.012	1.23	0.0	0.06	16.28	0.01	1.926	22.20	0.55	8.8	91.2	0.0	-2.20	1.50	0.21	0.15	0.35	29029	3704	17	0	41	0	0	logfile
✔	7QL2	14061	2023-08-09	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7LJ3	23388	2023-08-18	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	6FU8	4319	2023-08-09	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	5A8L	3099	2023-08-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile

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