Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2022-07-02	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2022-07-03	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.19	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.009	1.40	0.0	0.05	13.33	0.01	2.113	15.84	0.00	6.4	93.4	0.2	-0.82	2.65	0.04	0.13	—	4287	551	2	0	0	0	0	logfile
✔	6KKR	0701	2022-07-03	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.99	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.77	0.0	0.04	13.11	0.00	2.105	13.63	2.15	4.1	95.9	0.0	0.35	1.64	0.12	0.11	0.38	8416	1074	4	0	24	0	0	logfile
✔	5M5H	4155	2022-07-02	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7ASK	11895	2022-07-03	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.61	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.28	3.0	0.05	15.61	0.01	1.982	20.29	0.00	19.5	78.9	1.6	-3.52	1.30	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	7CHH	30374	2022-07-06	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.17	0.0	0.05	15.96	0.01	1.918	20.25	0.00	6.6	93.4	0.0	-1.77	1.33	0.21	0.12	0.40	29029	3704	17	0	41	0	0	logfile
✔	5TC1	8397	2022-07-04	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.60	0.0	0.04	17.02	0.00	2.198	6.97	0.54	4.7	95.3	0.0	-0.54	0.71	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	7U10	26273	2022-07-03	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.06	0.01	2.203	12.01	3.17	7.3	92.7	0.0	-3.34	2.75	0.21	0.56	3.09	3429	405	6	0	12	0	0	logfile
✔	7BHQ	12190	2022-07-03	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	2.1	0.020	1.62	1.0	0.05	16.56	0.00	1.850	17.30	0.24	3.6	96.4	0.0	0.60	0.82	0.21	0.52	1.38	7402	1010	5	0	0	0	0	logfile
✔	5A8L	3099	2022-07-03	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	0.91	0.0	0.03	16.17	0.01	1.948	15.58	0.38	8.5	90.6	1.0	-1.53	1.40	0.22	0.61	0.47	12264	624	9	347	0	0	0	logfile
✔	7LJ3	23388	2022-07-05	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.010	0.89	0.0	0.03	19.65	0.01	1.899	9.15	4.21	5.0	94.9	0.2	2.05	1.40	0.22	0.78	1.86	25714	2564	12	225	0	0	0	logfile
✔	3JBS	6478	2022-07-02	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✔	6FU8	4319	2022-07-02	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7FG3	31577	2022-07-03	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	24.09	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	6KFK	9974	2022-07-04	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.30	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.96	0.0	0.05	12.82	0.00	2.072	21.35	0.00	8.3	90.8	0.9	-1.45	2.85	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	6RED	4850	2022-07-06	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.95	1.0	0.04	16.14	0.01	1.576	21.96	2.38	4.8	95.0	0.2	-1.22	0.93	0.24	0.15	0.26	33899	4503	25	0	10	0	0	logfile
✔	6FLQ	4275	2022-07-06	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	1.04	1.0	0.04	16.84	0.01	1.605	17.76	0.04	8.4	91.5	0.1	-1.51	1.95	0.24	0.17	0.16	30201	3868	10	91	3	0	0	logfile
✔	3JC2	3245	2022-07-03	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✔	7KU5	23034	2022-07-02	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.038	3.67	0.0	0.08	18.32	0.01	2.079	18.87	0.00	11.6	88.4	0.0	-1.92	1.16	0.25	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7QL2	14061	2022-07-02	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.005	0.63	0.0	0.05	12.52	0.01	2.550	1.75	2.96	9.0	91.0	0.0	-3.01	0.80	0.25	0.74	5.06	2286	150	3	0	0	0	1179	logfile

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