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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5M6S | 3451 | 2023-02-16 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.6 | 0.003 | 0.63 | 0.0 | 0.03 | 18.81 | 0.00 | 1.995 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.64 | 2.46 | 0.03 | 0.08 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 6VYB | 22748 | 2023-02-24 | 2020-02-25 | 3.2 | 3.61 | 4.19 | 10.0 | 0.014 | 1.36 | 1.0 | 0.09 | 10.35 | 0.01 | 2.299 | 0.53 | 0.13 | 2.4 | 97.5 | 0.1 | 0.50 | -0.01 | -0.01 | 0.12 | 3.4 | 0.003 | 0.66 | 0.0 | 0.05 | 12.68 | 0.00 | 2.123 | 10.83 | 0.09 | 4.0 | 96.0 | 0.1 | -0.55 | 1.03 | 0.03 | 0.09 | 0.43 | 22365 | 2875 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 5MSH | 3565 | 2023-02-17 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.56 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 3.07 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.7 | 0.004 | 0.86 | 0.0 | 0.05 | 12.82 | 0.01 | 2.120 | 16.79 | 0.00 | 6.8 | 93.0 | 0.2 | -1.06 | 2.67 | 0.05 | 0.16 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LNK | 4481 | 2023-02-24 | 2016-08-04 | 3.9 | 3.95 | 17.72 | 71.0 | 0.007 | 1.05 | 0.0 | 1.04 | 10.85 | 0.01 | 2.038 | 25.42 | 0.32 | 12.6 | 86.9 | 0.5 | -4.85 | 0.01 | 0.00 | 0.13 | 40.0 | 0.009 | 1.71 | 0.0 | 0.31 | 13.69 | 0.01 | 1.425 | 16.41 | 0.33 | 10.3 | 89.5 | 0.3 | -1.27 | 0.81 | 0.05 | 0.14 | 0.19 | 63760 | 7918 | 61 | 0 | 144 | 0 | 0 | logfile |
✔ | 6M71 | 11007 | 2023-02-18 | 2020-03-16 | 2.9 | 3.22 | 3.22 | 51.0 | 0.003 | 0.59 | 0.0 | 0.04 | 13.42 | 0.00 | 1.966 | 8.99 | 0.00 | 4.2 | 95.8 | 0.0 | -3.06 | 0.04 | 0.02 | 0.33 | 3.1 | 0.004 | 0.73 | 0.0 | 0.04 | 15.84 | 0.00 | 2.163 | 13.70 | 3.17 | 5.0 | 95.0 | 0.0 | -0.20 | 1.62 | 0.06 | 0.05 | -0.05 | 8614 | 1085 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZZ | 33318 | 2023-02-21 | 2019-11-16 | 3.1 | 3.28 | 3.51 | 36.0 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.02 | 0.00 | 0.27 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 14.00 | 0.00 | 2.048 | 10.48 | 0.12 | 3.1 | 96.9 | 0.0 | 1.34 | 2.50 | 0.07 | 0.13 | -0.03 | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7URi | 26713 | 2023-02-16 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.008 | 1.44 | 0.0 | 0.07 | 23.84 | 0.01 | 2.072 | 23.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.06 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7UR5 | 26705 | 2023-02-17 | 2022-04-21 | 2.6 | 2.89 | 2.82 | 2.9 | 0.008 | 1.48 | 0.0 | 0.11 | 25.09 | 0.01 | 2.204 | 2.44 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.58 | — | 2.9 | 0.005 | 0.83 | 0.0 | 0.04 | 20.54 | 0.01 | 2.027 | 14.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.86 | 0.08 | 0.65 | — | 5709 | 0 | 3 | 270 | 0 | 0 | 0 | logfile |
✔ | 6PB1 | 26104 | 2023-02-18 | 2019-06-12 | 2.8 | 2.98 | — | 40.0 | 0.003 | 0.79 | 0.0 | 0.06 | 8.98 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.05 | 0.02 | 0.34 | 2.9 | 0.003 | 0.65 | 0.0 | 0.04 | 14.12 | 0.00 | 2.156 | 12.00 | 2.15 | 3.2 | 96.8 | 0.0 | -0.89 | 2.36 | 0.11 | 0.20 | 0.34 | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✔ | 6ZGE | 23580 | 2023-02-26 | 2020-06-18 | 2.6 | 2.72 | 2.67 | 20.0 | 0.009 | 0.91 | 0.0 | 0.06 | 12.46 | 0.01 | 2.344 | 2.22 | 0.73 | 4.7 | 95.2 | 0.1 | -0.97 | 0.06 | 0.00 | 0.14 | 20.0 | 0.005 | 0.78 | 0.0 | 0.05 | 13.62 | 0.00 | 2.128 | 9.50 | 1.01 | 4.8 | 95.2 | 0.0 | -0.90 | 0.80 | 0.12 | 0.12 | 0.37 | 26991 | 3294 | 39 | 0 | 81 | 48 | 0 | logfile |
✔ | 6N4B | 0745 | 2023-02-18 | 2018-11-18 | 3.0 | 3.44 | — | 39.0 | 0.011 | 1.40 | 4.0 | 0.09 | 9.55 | 0.01 | 1.855 | 20.11 | 0.84 | 2.7 | 97.3 | 0.0 | -2.27 | 0.08 | 0.01 | 0.16 | 3.4 | 0.004 | 0.81 | 0.0 | 0.04 | 12.42 | 0.00 | 2.081 | 12.08 | 0.96 | 5.4 | 94.6 | 0.0 | -0.45 | 1.11 | 0.13 | 0.14 | 0.19 | 8453 | 1121 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7D77 | 32838 | 2023-02-18 | 2020-10-03 | 2.9 | 3.07 | — | 20.0 | 0.008 | 0.78 | 0.0 | 0.06 | 13.51 | 0.00 | 2.107 | 8.48 | 0.21 | 3.7 | 96.3 | 0.0 | -2.58 | 0.07 | 0.01 | 0.37 | 3.0 | 0.005 | 0.85 | 0.0 | 0.05 | 15.51 | 0.01 | 2.082 | 17.53 | 2.15 | 5.8 | 94.1 | 0.1 | -0.58 | 1.02 | 0.14 | 0.18 | 0.47 | 8785 | 1105 | 7 | 0 | 7 | 1 | 0 | logfile |
✔ | 6VXX | 24693 | 2023-02-24 | 2020-02-25 | 2.8 | 3.28 | 2.89 | 39.0 | 0.016 | 1.35 | 0.0 | 0.09 | 10.67 | 0.01 | 2.389 | 0.81 | 0.23 | 2.4 | 97.6 | 0.0 | 0.27 | 0.07 | 0.00 | 0.14 | 2.8 | 0.003 | 0.69 | 0.0 | 0.05 | 13.86 | 0.00 | 2.095 | 12.22 | 2.00 | 3.9 | 96.1 | 0.0 | -0.28 | 1.68 | 0.14 | 0.11 | 0.11 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7URM | 26714 | 2023-02-16 | 2022-04-22 | 3.0 | 3.11 | 3.56 | 2.9 | 0.009 | 1.41 | 0.0 | 0.11 | 23.67 | 0.01 | 2.440 | 0.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.14 | 0.53 | — | 3.0 | 0.007 | 1.16 | 0.0 | 0.05 | 22.87 | 0.01 | 1.983 | 29.94 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.15 | 0.54 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 6CAJ | 23209 | 2023-02-25 | 2018-01-31 | 2.8 | 3.42 | — | 70.0 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.88 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.12 | 0.02 | -0.04 | 2.9 | 0.003 | 0.73 | 0.0 | 0.04 | 14.60 | 0.01 | 2.063 | 15.80 | 3.90 | 5.9 | 94.1 | 0.0 | -1.06 | 1.40 | 0.15 | 0.14 | 0.02 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7EFo | 31087 | 2023-02-18 | 2021-03-22 | 3.85 | 4.26 | — | 38.0 | 0.010 | 1.20 | 1.0 | 0.15 | 17.15 | 0.01 | 2.071 | 58.70 | 6.18 | 7.1 | 92.8 | 0.1 | -2.21 | 0.11 | 0.02 | -0.28 | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 17.43 | 0.00 | 2.154 | 18.19 | 0.39 | 6.0 | 94.0 | 0.0 | -1.06 | 2.12 | 0.15 | 0.09 | 0.19 | 7306 | 916 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6CAJ | 26098 | 2023-02-25 | 2018-01-31 | 2.8 | 3.39 | — | 68.0 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.88 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.11 | 0.02 | -0.06 | 3.2 | 0.007 | 1.06 | 1.0 | 0.06 | 13.95 | 0.01 | 1.962 | 26.36 | 3.07 | 9.5 | 90.3 | 0.2 | -1.77 | 1.67 | 0.17 | 0.25 | 0.12 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 8C9M | 16511 | 2023-02-23 | 2023-01-23 | 3.2 | 4.11 | 2.97 | 4.1 | 0.023 | 1.43 | 0.0 | 0.11 | 9.58 | 0.01 | 2.432 | 1.40 | 0.00 | 2.7 | 96.5 | 0.9 | -0.57 | 0.34 | 0.70 | 1.19 | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 15.77 | 0.00 | 2.186 | 4.75 | 0.43 | 3.2 | 96.8 | 0.0 | 2.36 | 1.03 | 0.20 | 0.60 | 0.94 | 21480 | 1368 | 6 | 0 | 0 | 0 | 10752 | logfile |
✔ | 7SC1 | 26879 | 2023-02-27 | 2021-09-26 | 3.2 | 3.82 | 3.39 | 20.0 | 0.006 | 0.60 | 0.0 | 0.05 | 14.85 | 0.00 | 2.169 | 10.07 | 0.06 | 4.0 | 96.0 | 0.0 | -0.55 | 0.14 | 0.01 | -0.05 | 3.3 | 0.003 | 0.66 | 0.0 | 0.05 | 16.70 | 0.00 | 2.082 | 13.14 | 0.37 | 3.8 | 96.2 | 0.0 | -0.67 | 0.87 | 0.20 | 0.14 | 0.03 | 29415 | 3705 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2023-02-16 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |