Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5XMi	6733	2021-08-08	2017-05-15	3.9	3.93	—	3.9	0.009	1.29	3.0	0.07	13.03	0.01	2.342	1.57	1.10	8.9	88.6	2.5	-3.05	0.61	0.63	0.60	3.9	0.011	1.04	0.0	0.04	17.12	0.01	2.076	19.20	0.74	8.6	91.1	0.3	-1.04	1.86	0.65	0.68	0.64	14969	1914	11	0	5	0	0	logfile
✔	6iFY	9658	2021-08-08	2018-09-21	3.8	4.00	—	3.9	0.005	1.03	3.0	0.06	15.92	0.01	1.733	12.33	0.81	10.7	89.0	0.3	-5.14	0.71	0.73	1.09	3.9	0.004	0.77	0.0	0.04	17.66	0.00	2.101	21.08	0.71	9.2	90.7	0.1	-2.58	1.72	0.72	0.75	0.86	19085	2253	11	62	1	0	0	logfile
✔	6iFU	9657	2021-08-08	2018-09-21	3.05	3.12	—	3.1	0.012	1.40	0.0	0.08	13.49	0.01	2.207	7.65	1.42	13.9	85.4	0.7	-4.96	0.67	0.80	3.58	3.1	0.009	1.04	1.0	0.04	16.95	0.00	2.049	15.35	0.33	12.5	87.2	0.3	-1.76	1.69	0.69	0.82	2.33	18750	2201	10	62	0	0	0	logfile
✔	5X5F	6707	2021-08-09	2017-02-15	4.2	4.29	—	4.2	0.011	1.72	6.0	0.08	14.74	0.01	1.433	32.45	5.99	13.0	85.5	1.4	-3.79	0.66	0.57	—	4.2	0.003	0.99	0.0	0.05	12.72	0.01	2.099	19.27	0.00	12.3	87.5	0.2	-2.28	1.23	0.71	0.70	—	26422	3423	3	0	0	0	0	logfile
✔	6RVY	10018	2021-08-07	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.72	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.004	0.76	0.0	0.04	13.30	0.00	2.305	13.14	0.00	5.2	94.8	0.0	0.02	0.73	0.64	0.81	—	9627	1290	3	0	0	0	0	logfile
✔	6iFL	9654	2021-08-08	2018-09-20	3.16	3.26	—	3.2	0.010	1.27	0.0	0.07	13.06	0.01	2.201	6.56	1.10	12.2	87.4	0.4	-4.69	0.74	0.81	3.15	3.2	0.004	0.75	0.0	0.04	16.54	0.00	2.102	14.57	0.33	10.7	89.3	0.0	-1.49	2.45	0.76	0.84	2.20	18845	2193	10	70	0	0	0	logfile
✔	6iFR	9656	2021-08-08	2018-09-21	3.4	3.49	—	3.4	0.007	1.16	3.0	0.06	12.48	0.01	1.558	8.77	1.13	12.0	87.7	0.3	-5.42	0.75	0.80	3.14	3.4	0.003	0.69	0.0	0.04	16.11	0.00	2.061	14.88	0.43	10.0	89.9	0.0	-2.11	1.36	0.76	0.82	2.17	19219	2216	11	70	4	0	0	logfile
✔	3JD8	6640	2021-08-08	2016-05-01	4.43	4.58	—	4.4	0.018	1.55	5.0	0.24	16.78	0.02	1.335	75.85	11.82	11.9	79.6	8.5	-3.29	0.54	0.62	—	4.4	0.004	0.94	0.0	0.08	12.33	0.00	2.102	19.30	0.00	8.3	90.7	1.1	-0.52	1.31	0.57	0.73	—	8050	1133	1	0	25	0	0	logfile
✔	6K4Y	9916	2021-08-10	2019-05-27	3.79	3.88	—	3.9	0.008	0.99	0.0	0.06	14.87	0.01	2.242	8.93	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	3.8	0.006	0.77	0.0	0.05	17.93	0.01	2.030	12.24	0.47	7.7	92.3	0.0	-1.20	1.59	0.71	0.78	1.29	33247	3950	11	105	3	0	0	logfile
✔	5X58	6703	2021-08-09	2017-02-15	3.2	3.40	—	3.4	0.007	1.16	0.0	0.06	11.70	0.01	2.272	5.28	0.44	9.2	90.8	0.0	-4.64	0.68	0.79	2.32	3.4	0.008	1.06	1.0	0.05	15.75	0.01	1.878	18.02	0.18	9.0	91.0	0.0	-1.82	2.03	0.72	0.81	1.88	25265	3159	6	0	42	0	0	logfile
✔	6oSM	20186	2021-08-07	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.22	0.0	0.07	15.32	0.00	2.228	25.45	1.46	28.3	71.7	0.0	-5.24	3.40	0.45	0.75	2.88	4100	600	10	0	0	0	0	logfile
✔	5SY1	8315	2021-08-08	2016-08-10	3.9	3.66	3.96	3.8	0.013	1.04	0.0	0.24	10.05	0.01	1.524	5.60	0.08	7.1	92.7	0.1	-5.23	0.51	0.62	1.65	3.7	0.003	0.87	0.0	0.09	15.34	0.00	2.106	10.12	0.16	5.0	95.0	0.0	0.69	0.99	0.62	0.77	0.88	11462	1458	8	0	10	0	0	logfile
✔	5ZBG	6911	2021-08-09	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.44	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.003	0.68	0.0	0.04	12.77	0.00	2.173	12.93	0.00	5.5	94.5	0.0	1.15	1.07	0.70	0.83	—	21260	2680	4	0	0	0	0	logfile
✘	5XJY	6724	2021-08-08	2017-05-04	4.1	4.17	—	4.1	0.010	1.29	0.0	0.07	12.18	0.01	2.200	9.20	1.27	14.1	85.8	0.2	-6.01	0.64	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12785	1901	1	0	12	0	0	logfile
✔	6JNX	9852	2021-08-10	2019-03-18	4.08	4.16	—	4.1	0.012	1.23	0.0	0.06	16.11	0.01	1.858	11.34	0.90	7.7	92.0	0.3	-3.99	0.61	0.68	—	4.1	0.004	0.74	0.0	0.04	16.79	0.00	1.955	11.20	0.03	6.9	93.0	0.1	-0.93	1.67	0.70	0.79	—	32639	3771	12	144	3	0	0	logfile
✔	6iG0	9660	2021-08-09	2018-09-21	3.37	3.49	—	3.4	0.009	1.18	5.0	0.07	12.62	0.01	1.102	14.73	1.40	10.4	89.4	0.1	-5.65	0.75	0.80	2.88	3.4	0.006	0.84	0.0	0.04	16.56	0.00	2.026	13.56	0.59	8.8	91.1	0.0	-2.23	1.36	0.76	0.82	2.06	19354	2258	11	67	5	0	0	logfile
✔	5YX9	6856	2021-08-09	2017-12-02	3.8	4.20	—	4.1	0.003	0.68	0.0	0.04	14.25	0.00	2.243	9.71	2.14	5.6	94.3	0.2	-3.27	0.68	0.83	1.43	4.1	0.003	0.83	0.0	0.04	16.29	0.00	2.214	11.12	0.31	6.2	93.7	0.1	1.58	0.90	0.68	0.82	1.17	21392	2700	4	0	0	0	0	logfile
✘	6RKD	4907	2021-08-09	2019-04-30	3.2	3.12	3.18	3.1	0.010	1.18	0.0	0.07	9.16	0.01	0.176	14.15	0.24	3.1	96.9	0.0	-3.60	0.69	0.82	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25290	3234	24	0	90	0	0	logfile
✔	6JBH	9790	2021-08-07	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.97	0.0	0.05	16.25	0.00	2.141	14.20	0.74	15.9	84.1	0.0	-2.40	1.02	0.68	0.81	1.94	8592	1062	4	0	0	0	0	logfile
✔	6J99	9783	2021-08-09	2019-01-22	4.1	4.24	—	4.2	0.008	0.97	1.0	0.05	26.76	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.007	1.01	0.0	0.04	27.19	0.01	1.970	24.62	0.10	5.4	94.6	0.0	-0.82	2.28	0.78	0.79	—	15266	1164	12	289	0	0	0	logfile

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