Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JR9	22444	2022-07-03	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	3.1	0.003	0.54	0.0	0.04	13.25	0.00	2.181	6.24	1.08	2.8	97.2	0.0	0.45	0.57	0.84	0.91	5.03	10021	1300	7	0	14	0	0	logfile
✔	7CN1	30413	2022-07-03	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.003	0.71	0.0	0.04	15.20	0.00	2.222	9.51	0.00	5.9	94.1	0.0	0.41	0.58	0.48	0.75	1.44	6290	822	6	0	3	0	0	logfile
✔	7LL1	23411	2022-07-07	2021-02-03	3.73	4.32	3.66	3.8	0.013	1.88	13.0	0.13	14.05	0.02	1.939	1.06	1.46	6.8	92.8	0.4	-1.71	0.76	0.68	2.56	3.8	0.004	0.67	0.0	0.05	14.63	0.00	2.166	9.00	0.15	5.5	94.4	0.1	-0.41	1.22	0.87	0.85	2.06	25773	3135	45	0	108	0	0	logfile
✔	7BP0	30138	2022-07-07	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	4.2	0.004	1.06	0.0	0.05	15.03	0.01	2.103	20.38	0.00	13.0	86.1	0.9	-2.72	1.43	0.60	0.68	—	41388	5244	12	0	0	0	0	logfile
✔	7D58	30577	2022-07-07	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.38	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.007	1.28	0.0	0.17	17.71	0.01	2.066	17.56	2.77	6.8	93.2	0.0	-1.95	1.85	0.76	0.69	0.77	40568	4980	26	46	8	0	0	logfile
✘	7BYN	30246	2022-07-04	2020-04-23	3.3	3.57	—	3.6	0.010	0.93	0.0	0.05	18.70	0.01	1.184	24.43	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16349	2000	12	0	8	0	0	logfile
✘	6M4N	30079	2022-07-04	2020-03-07	3.8	4.04	—	3.8	0.009	1.17	0.0	0.06	11.94	0.01	2.164	8.02	0.73	10.9	88.9	0.2	-4.50	0.70	0.81	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17836	2254	10	0	2	0	0	logfile
✔	7K61	22686	2022-07-04	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.57	0.0	0.03	27.87	0.00	2.129	7.81	1.25	2.1	97.9	0.0	2.03	0.36	0.86	0.88	3.49	17723	1222	12	394	0	0	0	logfile
✔	6WKX	21812	2022-07-03	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.66	0.0	0.04	16.54	0.00	2.187	8.89	0.00	0.0	100.0	0.0	4.22	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	6M4o	30080	2022-07-03	2020-03-08	3.4	3.64	—	3.6	0.007	1.14	0.0	0.06	11.53	0.01	2.203	4.69	1.15	11.4	88.4	0.2	-5.81	0.66	0.81	3.38	3.6	0.009	0.85	0.0	0.04	15.52	0.01	2.125	10.73	0.42	9.3	90.7	0.0	-1.77	1.75	0.68	0.83	2.59	8918	1127	6	0	1	0	0	logfile
✘	7M05	23609	2022-07-03	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.81	0.0	0.06	14.50	0.01	1.222	3.94	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57152	3636	12	0	4	0	28188	logfile
✔	6WKY	21813	2022-07-03	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	7CGP	9958	2022-07-03	2020-07-01	3.7	3.87	—	3.8	0.006	0.66	0.0	0.04	14.71	0.00	1.852	10.54	0.53	5.1	94.9	0.0	-2.68	0.68	0.81	1.54	3.8	0.006	0.98	0.0	0.05	17.60	0.01	2.075	18.74	1.43	4.8	95.2	0.0	0.25	1.48	0.69	0.82	1.18	12433	1569	16	0	1	0	0	logfile
✘	6LQG	0944	2022-07-03	2020-01-13	3.1	3.24	—	3.2	0.006	0.94	0.0	0.06	10.67	0.01	1.220	3.81	0.27	5.0	95.0	0.0	-3.57	0.65	0.84	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10855	1315	13	0	27	0	0	logfile
✔	7C9i	30312	2022-07-03	2020-06-05	3.1	3.26	—	3.2	0.008	1.04	0.0	0.06	10.90	0.01	2.232	3.17	0.18	6.3	93.7	0.0	-3.93	0.66	0.83	3.89	3.2	0.005	0.66	0.0	0.04	14.50	0.00	2.099	5.93	0.18	5.6	94.4	0.0	-0.33	0.48	0.68	0.86	2.62	10853	1314	13	0	26	0	0	logfile
✘	6LR4	0957	2022-07-03	2020-01-15	3.0	3.16	—	3.1	0.007	0.95	0.0	0.06	10.63	0.01	1.220	2.99	0.09	5.8	94.2	0.0	-3.96	0.64	0.84	4.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10838	1314	13	0	27	0	0	logfile
✘	7D8X	30614	2022-07-03	2020-10-11	2.6	2.78	—	2.7	0.008	1.08	0.0	0.06	11.19	0.01	1.183	3.34	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✔	6XG6	22174	2022-07-03	2020-06-17	3.2	2.96	3.20	3.0	0.003	0.55	0.0	0.04	15.41	0.00	2.048	8.99	0.00	3.6	96.4	0.0	0.46	0.71	0.77	2.28	3.0	0.003	0.62	0.0	0.04	17.28	0.01	1.905	12.90	0.19	5.1	94.9	0.0	-0.34	0.98	0.75	0.84	2.57	9825	1220	4	0	8	0	0	logfile
✔	6X9T	22110	2022-07-05	2020-06-03	3.2	3.21	3.10	3.2	0.024	1.69	0.0	0.10	9.76	0.01	2.251	1.19	0.44	3.3	96.4	0.4	0.44	0.60	0.72	3.90	3.2	0.008	0.77	0.0	0.05	13.68	0.00	2.105	5.60	0.73	4.9	95.0	0.0	0.21	0.60	0.64	0.82	3.29	26120	3144	44	0	116	0	0	logfile
✔	7LL2	23412	2022-07-07	2021-02-03	3.73	4.36	3.97	3.8	0.013	1.77	3.0	0.10	13.21	0.02	2.531	0.77	0.63	5.9	93.7	0.4	-0.81	0.82	0.76	2.65	3.7	0.004	0.64	0.0	0.04	14.12	0.00	2.139	6.44	0.22	4.2	95.8	0.0	-0.03	1.18	0.86	0.85	2.21	25512	3060	48	0	132	0	0	logfile

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