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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JR9 | 22444 | 2022-07-03 | 2020-08-11 | 2.95 | 3.21 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 8.26 | 0.01 | 2.235 | 4.11 | 0.00 | 3.1 | 96.9 | 0.0 | -2.53 | 0.84 | 0.89 | 5.25 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 13.25 | 0.00 | 2.181 | 6.24 | 1.08 | 2.8 | 97.2 | 0.0 | 0.45 | 0.57 | 0.84 | 0.91 | 5.03 | 10021 | 1300 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 7CN1 | 30413 | 2022-07-03 | 2020-07-29 | 3.7 | 3.74 | — | 3.7 | 0.008 | 0.78 | 0.0 | 0.05 | 13.72 | 0.00 | 2.147 | 16.07 | 0.32 | 10.2 | 89.8 | 0.0 | -3.65 | 0.47 | 0.79 | 1.71 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 15.20 | 0.00 | 2.222 | 9.51 | 0.00 | 5.9 | 94.1 | 0.0 | 0.41 | 0.58 | 0.48 | 0.75 | 1.44 | 6290 | 822 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7LL1 | 23411 | 2022-07-07 | 2021-02-03 | 3.73 | 4.32 | 3.66 | 3.8 | 0.013 | 1.88 | 13.0 | 0.13 | 14.05 | 0.02 | 1.939 | 1.06 | 1.46 | 6.8 | 92.8 | 0.4 | -1.71 | 0.76 | 0.68 | 2.56 | 3.8 | 0.004 | 0.67 | 0.0 | 0.05 | 14.63 | 0.00 | 2.166 | 9.00 | 0.15 | 5.5 | 94.4 | 0.1 | -0.41 | 1.22 | 0.87 | 0.85 | 2.06 | 25773 | 3135 | 45 | 0 | 108 | 0 | 0 | logfile |
✔ | 7BP0 | 30138 | 2022-07-07 | 2020-03-20 | 4.6 | 4.05 | — | 4.2 | 0.014 | 2.51 | 229.0 | 0.17 | 20.41 | 0.02 | 1.115 | 151.43 | 28.18 | 10.1 | 84.8 | 5.1 | -1.64 | 0.62 | 0.71 | — | 4.2 | 0.004 | 1.06 | 0.0 | 0.05 | 15.03 | 0.01 | 2.103 | 20.38 | 0.00 | 13.0 | 86.1 | 0.9 | -2.72 | 1.43 | 0.60 | 0.68 | — | 41388 | 5244 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2022-07-07 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 13.94 | 0.00 | 2.139 | 8.38 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.4 | 0.007 | 1.28 | 0.0 | 0.17 | 17.71 | 0.01 | 2.066 | 17.56 | 2.77 | 6.8 | 93.2 | 0.0 | -1.95 | 1.85 | 0.76 | 0.69 | 0.77 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |
✘ | 7BYN | 30246 | 2022-07-04 | 2020-04-23 | 3.3 | 3.57 | — | 3.6 | 0.010 | 0.93 | 0.0 | 0.05 | 18.70 | 0.01 | 1.184 | 24.43 | 16.39 | 2.9 | 96.9 | 0.2 | -0.58 | 0.48 | 0.52 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16349 | 2000 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6M4N | 30079 | 2022-07-04 | 2020-03-07 | 3.8 | 4.04 | — | 3.8 | 0.009 | 1.17 | 0.0 | 0.06 | 11.94 | 0.01 | 2.164 | 8.02 | 0.73 | 10.9 | 88.9 | 0.2 | -4.50 | 0.70 | 0.81 | 1.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17836 | 2254 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 7K61 | 22686 | 2022-07-04 | 2020-09-17 | 2.85 | 3.27 | — | 3.1 | 0.007 | 0.67 | 0.0 | 0.04 | 27.29 | 0.00 | 2.130 | 6.03 | 0.00 | 1.5 | 98.5 | 0.0 | 1.15 | 0.85 | 0.86 | 4.35 | 3.1 | 0.004 | 0.57 | 0.0 | 0.03 | 27.87 | 0.00 | 2.129 | 7.81 | 1.25 | 2.1 | 97.9 | 0.0 | 2.03 | 0.36 | 0.86 | 0.88 | 3.49 | 17723 | 1222 | 12 | 394 | 0 | 0 | 0 | logfile |
✔ | 6WKX | 21812 | 2022-07-03 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.004 | 0.66 | 0.0 | 0.04 | 16.54 | 0.00 | 2.187 | 8.89 | 0.00 | 0.0 | 100.0 | 0.0 | 4.22 | 1.00 | 0.77 | 0.89 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M4o | 30080 | 2022-07-03 | 2020-03-08 | 3.4 | 3.64 | — | 3.6 | 0.007 | 1.14 | 0.0 | 0.06 | 11.53 | 0.01 | 2.203 | 4.69 | 1.15 | 11.4 | 88.4 | 0.2 | -5.81 | 0.66 | 0.81 | 3.38 | 3.6 | 0.009 | 0.85 | 0.0 | 0.04 | 15.52 | 0.01 | 2.125 | 10.73 | 0.42 | 9.3 | 90.7 | 0.0 | -1.77 | 1.75 | 0.68 | 0.83 | 2.59 | 8918 | 1127 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7M05 | 23609 | 2022-07-03 | 2021-03-10 | 2.39 | 2.66 | 2.49 | 2.6 | 0.013 | 0.81 | 0.0 | 0.06 | 14.50 | 0.01 | 1.222 | 3.94 | 0.50 | 6.9 | 92.3 | 0.8 | -3.01 | 0.75 | 0.81 | 4.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57152 | 3636 | 12 | 0 | 4 | 0 | 28188 | logfile |
✔ | 6WKY | 21813 | 2022-07-03 | 2020-04-17 | 4.2 | 4.29 | — | 4.1 | 0.006 | 0.74 | 0.0 | 0.05 | 16.88 | 0.00 | 2.366 | 8.91 | 0.00 | 0.6 | 99.4 | 0.0 | -5.20 | 0.76 | 0.88 | — | 4.1 | 0.004 | 0.94 | 0.0 | 0.05 | 15.75 | 0.00 | 2.311 | 20.60 | 0.00 | 0.2 | 99.8 | 0.0 | -1.99 | 1.44 | 0.75 | 0.86 | — | 9140 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CGP | 9958 | 2022-07-03 | 2020-07-01 | 3.7 | 3.87 | — | 3.8 | 0.006 | 0.66 | 0.0 | 0.04 | 14.71 | 0.00 | 1.852 | 10.54 | 0.53 | 5.1 | 94.9 | 0.0 | -2.68 | 0.68 | 0.81 | 1.54 | 3.8 | 0.006 | 0.98 | 0.0 | 0.05 | 17.60 | 0.01 | 2.075 | 18.74 | 1.43 | 4.8 | 95.2 | 0.0 | 0.25 | 1.48 | 0.69 | 0.82 | 1.18 | 12433 | 1569 | 16 | 0 | 1 | 0 | 0 | logfile |
✘ | 6LQG | 0944 | 2022-07-03 | 2020-01-13 | 3.1 | 3.24 | — | 3.2 | 0.006 | 0.94 | 0.0 | 0.06 | 10.67 | 0.01 | 1.220 | 3.81 | 0.27 | 5.0 | 95.0 | 0.0 | -3.57 | 0.65 | 0.84 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10855 | 1315 | 13 | 0 | 27 | 0 | 0 | logfile |
✔ | 7C9i | 30312 | 2022-07-03 | 2020-06-05 | 3.1 | 3.26 | — | 3.2 | 0.008 | 1.04 | 0.0 | 0.06 | 10.90 | 0.01 | 2.232 | 3.17 | 0.18 | 6.3 | 93.7 | 0.0 | -3.93 | 0.66 | 0.83 | 3.89 | 3.2 | 0.005 | 0.66 | 0.0 | 0.04 | 14.50 | 0.00 | 2.099 | 5.93 | 0.18 | 5.6 | 94.4 | 0.0 | -0.33 | 0.48 | 0.68 | 0.86 | 2.62 | 10853 | 1314 | 13 | 0 | 26 | 0 | 0 | logfile |
✘ | 6LR4 | 0957 | 2022-07-03 | 2020-01-15 | 3.0 | 3.16 | — | 3.1 | 0.007 | 0.95 | 0.0 | 0.06 | 10.63 | 0.01 | 1.220 | 2.99 | 0.09 | 5.8 | 94.2 | 0.0 | -3.96 | 0.64 | 0.84 | 4.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10838 | 1314 | 13 | 0 | 27 | 0 | 0 | logfile |
✘ | 7D8X | 30614 | 2022-07-03 | 2020-10-11 | 2.6 | 2.78 | — | 2.7 | 0.008 | 1.08 | 0.0 | 0.06 | 11.19 | 0.01 | 1.183 | 3.34 | 0.18 | 5.1 | 94.9 | 0.0 | -3.36 | 0.70 | 0.86 | 4.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10928 | 1314 | 13 | 0 | 28 | 0 | 0 | logfile |
✔ | 6XG6 | 22174 | 2022-07-03 | 2020-06-17 | 3.2 | 2.96 | 3.20 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 15.41 | 0.00 | 2.048 | 8.99 | 0.00 | 3.6 | 96.4 | 0.0 | 0.46 | 0.71 | 0.77 | 2.28 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 17.28 | 0.01 | 1.905 | 12.90 | 0.19 | 5.1 | 94.9 | 0.0 | -0.34 | 0.98 | 0.75 | 0.84 | 2.57 | 9825 | 1220 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6X9T | 22110 | 2022-07-05 | 2020-06-03 | 3.2 | 3.21 | 3.10 | 3.2 | 0.024 | 1.69 | 0.0 | 0.10 | 9.76 | 0.01 | 2.251 | 1.19 | 0.44 | 3.3 | 96.4 | 0.4 | 0.44 | 0.60 | 0.72 | 3.90 | 3.2 | 0.008 | 0.77 | 0.0 | 0.05 | 13.68 | 0.00 | 2.105 | 5.60 | 0.73 | 4.9 | 95.0 | 0.0 | 0.21 | 0.60 | 0.64 | 0.82 | 3.29 | 26120 | 3144 | 44 | 0 | 116 | 0 | 0 | logfile |
✔ | 7LL2 | 23412 | 2022-07-07 | 2021-02-03 | 3.73 | 4.36 | 3.97 | 3.8 | 0.013 | 1.77 | 3.0 | 0.10 | 13.21 | 0.02 | 2.531 | 0.77 | 0.63 | 5.9 | 93.7 | 0.4 | -0.81 | 0.82 | 0.76 | 2.65 | 3.7 | 0.004 | 0.64 | 0.0 | 0.04 | 14.12 | 0.00 | 2.139 | 6.44 | 0.22 | 4.2 | 95.8 | 0.0 | -0.03 | 1.18 | 0.86 | 0.85 | 2.21 | 25512 | 3060 | 48 | 0 | 132 | 0 | 0 | logfile |