Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F6H	28883	2023-11-17	2022-11-16	3.9	4.17	3.97	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	4.1	0.003	0.54	0.0	0.04	15.26	0.00	1.817	9.05	0.18	6.5	93.2	0.2	0.26	0.49	0.72	0.79	2.22	20768	1358	8	0	6	0	10347	logfile
✔	7AS9	11890	2023-11-21	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.25	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.005	0.81	0.0	0.04	18.26	0.01	2.035	33.29	0.90	11.8	88.2	0.1	-3.02	0.73	0.92	0.84	0.20	93137	3720	32	2999	0	0	0	logfile
✔	8DM6	27528	2023-11-14	2022-07-08	2.77	3.36	2.83	3.3	0.006	0.94	0.0	0.06	14.09	0.01	2.282	3.28	0.57	1.6	98.4	0.0	-0.08	0.77	0.83	2.73	3.2	0.004	0.68	0.0	0.04	16.78	0.00	2.208	9.05	1.72	2.3	97.7	0.0	1.39	1.60	0.76	0.83	2.82	6559	796	4	0	7	0	0	logfile
✔	8DM9	27531	2023-11-20	2022-07-08	2.56	3.10	2.68	2.8	0.005	0.88	0.0	0.06	13.23	0.01	2.264	3.60	0.15	2.0	97.9	0.1	-0.21	0.78	0.81	2.41	2.9	0.003	0.63	0.0	0.04	15.38	0.00	2.156	9.57	1.39	2.1	97.9	0.0	0.49	2.11	0.78	0.83	2.51	30004	3689	26	0	62	0	0	logfile
✔	7oiM	12932	2023-11-21	2021-05-11	4.0	4.68	3.92	3.7	0.006	1.32	7.0	0.07	13.98	0.01	2.069	5.16	0.05	8.1	91.7	0.2	-3.63	0.81	0.66	—	3.8	0.003	0.76	0.0	0.04	15.27	0.00	2.083	13.43	0.33	7.2	92.8	0.0	-0.40	0.67	0.90	0.81	—	35597	4426	1	0	6	0	0	logfile
✔	7oCi	12808	2023-11-16	2021-04-27	3.46	3.63	—	3.6	0.006	1.26	0.0	0.59	14.98	0.01	2.155	6.07	0.00	2.8	97.2	0.0	-2.61	0.65	0.87	3.56	3.6	0.003	1.17	0.0	0.10	15.43	0.00	2.083	4.82	0.57	2.9	97.1	0.0	-0.78	0.36	0.64	0.89	3.18	17077	2071	18	0	46	0	0	logfile
✔	7NNH	12477	2023-11-13	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.004	1.05	0.0	0.05	16.94	0.00	2.081	31.82	0.68	20.6	79.1	0.3	-2.70	1.09	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	7SXS	25504	2023-11-19	2021-11-24	2.64	3.48	—	2.9	0.005	0.78	0.0	0.05	13.05	0.01	2.272	2.49	0.00	2.8	97.2	0.0	-0.63	0.85	0.84	2.76	2.9	0.004	0.59	0.0	0.04	14.40	0.00	2.120	7.15	0.70	2.2	97.8	0.0	0.61	1.18	0.86	0.86	2.79	25245	3120	24	0	60	0	0	logfile
✔	8DLM	27506	2023-11-19	2022-07-08	2.89	3.78	3.09	3.1	0.005	0.79	0.0	0.06	13.35	0.01	2.293	3.34	0.03	1.8	98.2	0.0	0.41	0.83	0.82	2.35	3.1	0.003	0.63	0.0	0.04	14.94	0.00	2.144	9.86	1.03	2.7	97.3	0.0	0.90	1.24	0.83	0.84	2.31	26852	3303	26	0	62	0	0	logfile
✔	8CYC	27074	2023-11-20	2022-05-23	2.9	3.44	2.92	3.2	0.002	0.53	0.0	0.04	13.71	0.00	2.186	8.20	0.16	5.4	94.3	0.3	-0.06	0.74	0.71	1.18	3.2	0.008	0.79	0.0	0.05	15.75	0.00	2.062	17.01	3.06	8.2	91.6	0.2	-1.16	0.55	0.76	0.77	1.84	28697	3677	6	0	0	0	0	logfile
✔	7LG5	23311	2023-11-19	2021-01-19	2.63	3.69	2.85	3.3	0.018	1.83	4.0	0.10	10.29	0.01	1.766	1.08	0.00	3.9	96.1	0.0	-0.64	0.90	0.88	3.10	3.3	0.006	0.71	0.0	0.05	12.41	0.00	1.913	5.58	0.81	5.3	94.7	0.0	-0.22	0.69	0.88	0.88	3.04	26888	3484	8	0	20	0	0	logfile
✔	7TEX	25854	2023-11-19	2022-01-06	3.27	4.06	—	3.3	0.005	0.80	0.0	0.06	13.34	0.01	2.280	2.91	0.17	1.4	98.6	0.0	0.73	0.84	0.83	2.15	3.3	0.004	0.61	0.0	0.04	14.64	0.00	2.158	9.77	0.07	2.9	97.1	0.0	0.93	0.63	0.85	0.86	2.12	26839	3303	26	0	62	0	0	logfile
✘	8CYD	27075	2023-11-20	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28454	3663	6	0	0	0	0	logfile
✔	7MJH	23873	2023-11-19	2021-04-20	2.66	3.49	—	3.0	0.005	0.77	0.0	0.05	13.30	0.01	2.266	3.37	0.00	3.0	97.0	0.0	-0.62	0.82	0.82	2.50	3.1	0.003	0.63	0.0	0.04	15.13	0.00	2.153	9.18	1.08	2.3	97.7	0.0	0.60	1.19	0.82	0.83	2.23	28143	3495	27	0	60	0	0	logfile
✔	7oiK	12931	2023-11-22	2021-05-11	3.5	4.50	3.60	3.1	0.006	1.31	11.0	0.07	12.06	0.01	2.148	5.35	0.02	8.9	90.9	0.2	-3.74	0.88	0.78	0.84	3.1	0.003	0.75	0.0	0.04	13.72	0.00	1.946	12.54	0.15	7.4	92.6	0.0	-0.10	1.60	0.88	0.78	0.78	36779	4579	3	0	4	0	0	logfile
✔	7ooP	13010	2023-11-15	2021-05-28	2.9	2.93	2.83	2.8	0.007	0.92	0.0	0.09	14.46	0.01	1.721	4.94	0.00	4.7	95.2	0.1	-1.58	0.80	0.78	2.94	2.9	0.003	0.68	1.0	0.04	16.47	0.00	1.968	10.37	1.53	4.2	95.8	0.0	0.41	4.42	0.82	0.83	2.78	62441	8386	32	103	49	0	0	logfile
✔	6YLX	10841	2023-11-16	2020-04-07	3.9	3.78	3.86	3.8	0.019	1.57	1.0	0.08	17.82	0.01	1.989	6.50	0.65	3.4	96.6	0.0	-3.91	0.81	0.81	1.40	3.7	0.004	0.76	0.0	0.04	17.43	0.01	2.077	18.35	0.75	8.3	91.6	0.1	-1.54	0.68	0.82	0.83	1.16	118882	7493	47	2757	0	0	0	logfile
✔	8EiS	28163	2023-11-19	2022-09-15	2.62	2.94	2.68	2.9	0.007	0.70	0.0	0.05	13.19	0.01	2.085	10.61	0.00	3.9	96.1	0.0	0.79	0.70	0.83	4.03	2.9	0.003	0.58	0.0	0.04	15.04	0.00	2.001	8.89	0.59	2.8	97.2	0.0	1.44	0.41	0.66	0.81	4.12	24370	1460	10	0	25	0	12025	logfile
✔	8CWW	27030	2023-11-15	2022-05-19	2.74	3.44	2.94	3.3	0.003	0.48	0.0	0.03	24.42	0.00	2.368	2.74	0.25	2.6	97.4	0.0	0.45	0.86	0.87	3.79	3.3	0.006	0.61	0.0	0.04	26.05	0.00	2.138	3.18	1.96	4.1	95.9	0.0	1.77	0.46	0.90	0.91	2.97	13625	962	12	292	2	0	0	logfile
✔	7oQY	13034	2023-11-19	2021-06-04	2.61	2.96	2.55	2.9	0.020	0.88	0.0	0.20	13.68	0.00	1.842	4.99	0.00	2.9	97.1	0.0	-0.33	0.67	0.82	3.68	2.9	0.005	0.81	0.0	0.05	16.31	0.00	1.531	4.92	1.06	3.0	97.0	0.0	-0.38	0.30	0.66	0.84	3.47	28032	3535	20	0	10	0	0	logfile

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