Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UXA	20931	2021-01-05	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.64	0.0	0.05	3.53	0.00	2.322	2.46	0.00	2.1	97.9	0.0	2.46	4.60	0.73	0.67	—	10344	2104	8	0	0	0	0	logfile
✔	7JG7	22313	2021-01-06	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.007	1.25	0.0	0.00	7.52	0.01	2.117	3.42	0.00	16.0	83.8	0.2	-2.10	1.67	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	3J89	6123	2021-01-05	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.57	0.0	0.03	17.74	0.00	2.034	9.09	0.00	1.8	98.2	0.0	2.66	2.02	0.81	0.79	0.68	9025	551	19	0	0	0	4598	logfile
✔	6UXB	20932	2021-01-05	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.59	0.0	0.05	3.18	0.00	2.362	2.92	0.00	2.6	97.4	0.0	2.73	2.34	0.77	0.74	—	10344	2104	8	0	0	0	0	logfile
✔	6oG3	20051	2021-01-05	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.98	0.0	0.00	7.40	0.00	2.621	32.79	0.00	9.1	90.9	0.0	-1.22	2.26	0.68	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7JG6	22312	2021-01-06	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.007	1.25	0.0	0.00	8.05	0.01	2.038	4.78	0.00	17.0	82.8	0.1	-2.60	1.70	0.72	0.70	—	19320	4819	20	0	11	0	0	logfile
✔	3JBS	6478	2021-01-05	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.002	0.58	0.0	0.04	11.45	0.00	2.353	4.14	0.00	2.3	97.7	0.0	0.55	2.91	0.21	0.79	3.78	1401	175	1	0	0	0	0	logfile
✔	6WX6	21951	2021-01-05	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.53	0.0	0.04	16.17	0.00	2.000	2.44	0.69	1.2	98.8	0.0	4.65	0.53	0.77	0.88	7.35	68332	4128	56	0	8	2420	32664	logfile
✔	6CoZ	7545	2021-01-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.004	0.88	0.0	0.04	6.14	0.00	2.319	9.28	0.00	17.9	82.1	0.0	-2.45	1.69	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6P6F	20261	2021-01-14	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.004	0.87	0.0	0.05	13.48	0.01	2.018	17.14	0.00	2.0	98.0	0.0	-0.30	1.39	0.70	0.85	—	159840	21060	120	0	0	0	0	logfile
✔	5U1D	8482	2021-01-05	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.003	0.71	0.0	0.04	13.10	0.00	2.142	10.30	0.00	3.8	96.1	0.1	1.24	1.33	0.52	0.75	0.93	7815	1168	3	0	0	0	0	logfile
✔	6UJA	20794	2021-01-05	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.08	10.44	0.01	1.802	0.13	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	3.4	0.002	0.59	0.0	0.04	12.58	0.00	2.124	6.26	0.00	2.7	97.3	0.0	0.48	0.63	0.81	0.82	3.27	8224	1128	5	0	23	0	0	logfile
✔	6X2A	21999	2021-01-06	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.75	4.0	0.09	12.51	0.01	2.552	0.14	1.64	6.3	93.3	0.4	-1.33	0.81	0.82	3.41	3.8	0.003	0.58	0.0	0.04	11.97	0.00	2.160	6.28	0.04	3.6	96.4	0.0	0.42	2.20	0.78	0.78	2.80	21562	2875	3	0	0	0	0	logfile
✔	6X79	22083	2021-01-06	2020-05-29	2.9	3.14	3.00	3.1	0.013	1.33	0.0	0.09	10.39	0.01	2.382	0.18	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.003	0.59	0.0	0.04	11.80	0.00	2.166	4.74	0.00	2.0	98.0	0.0	0.28	1.35	0.71	0.78	2.85	22251	2850	15	0	51	0	0	logfile
✔	6oLK	20115	2021-01-06	2019-04-16	4.0	4.14	—	4.1	0.005	1.05	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.004	0.85	0.0	0.05	6.76	0.00	2.078	8.89	0.00	13.4	86.6	0.0	-2.48	1.55	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	6D3R	7793	2021-01-05	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.21	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.6	0.002	0.63	0.0	0.04	11.89	0.00	2.269	7.00	0.00	2.6	97.4	0.0	2.28	1.24	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	6UQK	20849	2021-01-07	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.003	0.59	0.0	0.04	11.10	0.00	2.236	3.80	0.00	7.5	92.5	0.0	1.05	0.63	0.74	0.79	2.32	51567	8032	8	0	188	0	0	logfile
✔	6UJB	20795	2021-01-05	2019-10-02	3.51	3.73	—	3.6	0.014	1.45	0.0	0.08	10.89	0.01	1.782	0.22	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.62	0.0	0.04	13.15	0.00	2.155	6.58	0.00	3.4	96.6	0.0	0.00	1.52	0.79	0.85	2.93	9193	1180	6	0	23	0	0	logfile
✔	6G8Z	4362	2021-01-06	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.003	0.54	0.0	0.04	11.62	0.00	2.143	6.58	0.00	3.1	96.9	0.0	2.30	1.27	0.70	0.84	2.65	15966	1908	6	0	0	0	0	logfile
✔	6U7H	20668	2021-01-06	2019-09-02	3.1	3.91	3.18	3.6	0.012	1.77	33.0	0.11	13.25	0.01	2.282	0.24	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.004	0.59	0.0	0.04	12.36	0.00	2.188	6.95	0.00	3.3	96.7	0.0	0.38	1.24	0.85	0.84	3.28	23394	2895	6	0	81	0	0	logfile

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