Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JV2	22491	2021-08-07	2020-08-20	3.5	3.48	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.86	0.00	2.255	12.84	0.88	6.9	93.1	0.0	-0.65	1.28	0.71	0.78	3.52	2151	282	3	0	0	0	0	logfile
✔	3J89	6123	2021-08-07	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	7JSE	22451	2021-08-08	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.12	0.0	0.09	14.79	0.00	2.151	10.99	0.00	21.9	78.1	0.0	-2.77	2.79	0.69	0.70	—	13288	3168	24	32	0	0	0	logfile
✔	6oG3	20051	2021-08-07	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.91	0.0	0.00	7.17	0.00	2.622	30.38	0.00	6.5	93.5	0.0	-0.51	2.18	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	6WKT	21708	2021-08-07	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.56	0.0	0.03	15.96	0.00	2.217	10.95	0.29	4.8	95.2	0.0	3.77	1.87	0.65	0.75	3.31	3152	424	4	0	0	0	0	logfile
✔	7JG7	22313	2021-08-09	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.005	1.12	0.0	0.00	6.75	0.01	2.234	2.17	0.00	14.8	85.1	0.1	-1.45	1.66	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	7NCH	12266	2021-08-08	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.74	2.0	0.05	15.94	0.00	1.909	15.18	0.00	13.7	86.3	0.0	-4.43	1.79	0.66	0.55	1.69	11292	816	12	0	0	0	5796	logfile
✔	7NCA	12264	2021-08-08	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	13.31	0.00	2.284	0.58	0.00	2.1	97.9	0.0	-3.07	0.79	0.71	0.86	3.36	10428	732	12	0	0	0	5376	logfile
✔	7M7B	23709	2021-08-07	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.88	5.0	0.11	13.09	0.02	2.512	0.00	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.004	0.64	0.0	0.04	14.08	0.01	2.189	6.33	0.18	2.9	97.1	0.0	0.39	1.34	0.64	0.89	3.42	4898	635	4	0	2	0	0	logfile
✔	6UXB	20932	2021-08-08	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	3.11	0.00	2.367	2.06	0.00	2.7	97.3	0.0	2.63	2.34	0.76	0.73	—	10344	2104	8	0	0	0	0	logfile
✔	7JSH	22454	2021-08-07	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.89	0.01	1.900	42.53	0.00	35.4	64.4	0.2	-5.88	8.07	0.79	0.73	—	7916	1904	8	15	0	0	0	logfile
✔	7ADM	11731	2021-08-07	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.018	1.27	1.0	0.04	16.77	0.00	2.109	11.62	0.73	10.5	89.5	0.0	-1.59	0.98	0.50	0.71	2.34	9726	614	1	0	0	0	4799	logfile
✔	6UXA	20931	2021-08-08	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.66	0.0	0.05	3.77	0.00	2.164	5.91	0.00	3.6	96.4	0.0	2.00	4.60	0.72	0.66	—	10344	2104	8	0	0	0	0	logfile
✔	6CoZ	7545	2021-08-07	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.85	0.0	0.04	5.26	0.00	2.361	3.54	0.00	11.5	88.5	0.0	-1.90	1.67	0.83	0.78	—	1586	320	2	0	0	0	0	logfile
✔	6WX6	21951	2021-08-10	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.24	0.00	2.012	2.81	0.69	1.2	98.8	0.0	4.76	0.53	0.78	0.89	7.38	68332	4128	56	0	8	2420	32664	logfile
✔	3JBS	6478	2021-08-07	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.67	0.0	0.04	17.78	0.00	2.328	6.55	1.97	1.7	98.3	0.0	1.16	1.33	0.21	0.80	3.51	1401	175	1	0	0	0	0	logfile
✔	7JG6	22312	2021-08-09	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.006	1.24	0.0	0.00	8.12	0.01	2.045	5.19	0.00	17.8	82.0	0.2	-2.84	2.47	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7LWQ	23554	2021-08-08	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	6.0	0.09	13.64	0.01	2.529	0.05	0.90	6.5	93.1	0.4	-1.31	0.72	0.71	2.56	3.6	0.009	0.93	1.0	0.05	15.05	0.00	2.125	8.07	0.28	3.4	96.6	0.0	0.54	0.70	0.78	0.81	2.07	19190	2425	6	0	23	0	0	logfile
✔	7LWS	23555	2021-08-09	2021-03-01	3.22	3.43	—	3.4	0.013	1.79	3.0	0.09	12.79	0.01	2.500	0.06	0.50	4.4	95.2	0.4	-0.93	0.74	0.78	3.58	3.4	0.008	0.94	0.0	0.05	14.19	0.00	1.890	7.47	0.04	2.9	97.1	0.1	0.28	1.24	0.76	0.85	3.22	23439	3000	3	0	0	0	0	logfile
✔	5U1D	8482	2021-08-07	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.80	0.0	0.04	16.17	0.00	2.139	15.07	1.35	4.6	95.3	0.1	0.98	1.36	0.53	0.75	1.16	7815	1168	3	0	0	0	0	logfile

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