Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JV2	22491	2023-08-09	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.90	0.00	2.223	14.03	0.44	5.5	94.5	0.0	-0.83	1.27	0.71	0.77	3.76	2151	282	3	0	0	0	0	logfile
✔	7QKX	14056	2023-08-10	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.003	0.57	0.0	0.05	13.15	0.00	2.100	3.96	0.00	1.6	98.4	0.0	-1.71	1.18	0.40	0.85	5.25	6822	438	6	0	0	0	3480	logfile
✔	7QK6	14039	2023-08-09	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.59	0.0	0.05	15.99	0.00	2.381	4.46	0.69	5.8	94.2	0.0	-2.24	1.45	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7R4T	14316	2023-08-10	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.004	0.55	0.0	0.05	15.87	0.00	2.374	2.12	0.76	2.7	97.3	0.0	-1.45	2.29	0.42	0.89	6.04	7074	456	6	0	0	0	3606	logfile
✔	8oRF	17122	2023-08-09	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.61	0.0	0.05	17.12	0.00	2.097	5.38	1.52	4.0	96.0	0.0	-3.23	1.23	0.38	0.82	5.50	4653	303	3	0	0	0	2382	logfile
✔	7QK3	14030	2023-08-09	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7QL2	14061	2023-08-09	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7UXU	26862	2023-08-10	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	14.12	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.002	0.52	0.0	0.04	16.52	0.00	2.133	1.60	0.62	1.7	98.3	0.0	0.38	1.29	0.54	0.86	4.10	8776	536	8	0	4	0	4268	logfile
✔	7QKM	14047	2023-08-09	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.002	0.53	0.0	0.05	16.30	0.00	1.981	4.94	0.68	4.4	95.6	0.0	-1.70	1.31	0.39	0.89	5.83	5070	330	6	0	0	0	2634	logfile
✔	7QVC	14174	2023-08-09	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.006	0.78	0.0	0.06	18.05	0.00	2.117	9.84	3.70	6.0	94.0	0.0	-2.38	2.44	0.42	0.90	5.84	3255	405	3	0	0	0	0	logfile
✔	7QK1	14028	2023-08-09	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.75	0.0	0.05	16.44	0.00	2.210	6.55	0.51	3.7	96.3	0.0	-1.82	3.39	0.41	0.84	4.27	3444	450	6	0	0	0	0	logfile
✔	8oRG	17123	2023-08-09	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.57	0.0	0.05	17.00	0.00	2.261	1.77	2.63	1.6	98.4	0.0	-2.71	1.18	0.37	0.83	4.10	3966	258	3	0	0	0	2025	logfile
✔	7QKG	14041	2023-08-09	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.59	0.0	0.05	13.27	0.00	2.236	5.27	0.00	4.5	95.5	0.0	-1.51	1.16	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7NCH	12266	2023-08-12	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.70	2.0	0.05	15.63	0.00	1.978	9.23	0.00	11.2	88.8	0.0	-4.13	1.66	0.64	0.52	2.25	11292	816	12	0	0	0	5796	logfile
✔	7QL3	14062	2023-08-09	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.004	0.76	0.0	0.05	13.63	0.01	2.128	5.14	0.27	4.1	95.9	0.0	-2.49	1.15	0.43	0.83	4.92	3246	426	6	0	0	0	0	logfile
✔	7QJW	14024	2023-08-10	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.65	0.00	2.366	4.13	1.01	2.7	97.3	0.0	-1.58	1.60	0.38	0.78	4.37	7032	450	6	0	0	0	3588	logfile
✔	7NCA	12264	2023-08-11	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	12.94	0.00	2.433	0.77	0.39	2.7	97.3	0.0	-2.96	0.76	0.69	0.85	3.43	10428	732	12	0	0	0	5376	logfile
✔	7QJY	14026	2023-08-09	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.007	0.81	0.0	0.05	17.02	0.00	2.151	8.68	0.76	2.3	97.7	0.0	-2.24	3.43	0.35	0.83	4.41	3444	450	6	0	0	0	0	logfile
✔	6oG3	20051	2023-08-09	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6WKT	21708	2023-08-09	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.57	0.0	0.03	16.11	0.00	2.212	10.95	0.00	4.8	95.2	0.0	3.85	1.35	0.64	0.76	3.76	3152	424	4	0	0	0	0	logfile

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