Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ADM	11731	2021-05-03	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.003	0.64	0.0	0.04	16.74	0.00	2.006	11.62	0.55	11.3	88.7	0.0	-1.77	0.99	0.49	0.69	2.58	9726	614	1	0	0	0	4799	logfile
✔	6WX6	21951	2021-05-03	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.77	0.88	7.36	68332	4128	56	0	8	2420	32664	logfile
✔	7JG7	22313	2021-05-04	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.19	0.0	0.00	7.16	0.01	2.147	2.85	0.00	15.2	84.7	0.1	-1.74	1.67	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	7JG6	22312	2021-05-04	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.005	1.06	0.0	0.00	6.91	0.01	2.157	2.45	0.00	13.7	86.2	0.1	-1.84	1.69	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	3JBS	6478	2021-05-03	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.62	0.0	0.04	18.60	0.00	2.365	7.24	1.32	1.7	98.3	0.0	0.92	1.83	0.22	0.80	3.26	1401	175	1	0	0	0	0	logfile
✔	3J89	6123	2021-05-03	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.50	0.0	0.03	21.08	0.00	2.048	10.75	0.75	1.0	99.0	0.0	3.06	1.99	0.82	0.82	0.39	9025	551	19	0	0	0	4598	logfile
✔	6UXB	20932	2021-05-03	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	2.95	0.00	2.400	2.26	0.00	1.9	98.1	0.0	2.93	2.33	0.76	0.72	—	10344	2104	8	0	0	0	0	logfile
✔	6oG3	20051	2021-05-03	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	6UXA	20931	2021-05-03	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.63	0.0	0.05	3.30	0.00	2.242	3.25	0.00	2.5	97.5	0.0	2.65	4.60	0.71	0.65	—	10344	2104	8	0	0	0	0	logfile
✔	7NCA	12264	2021-05-03	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.004	0.57	0.0	0.05	13.10	0.00	2.425	1.25	0.39	5.9	94.1	0.0	-3.37	0.78	0.70	0.85	3.55	10428	732	12	0	0	0	5376	logfile
✔	7JSH	22454	2021-05-03	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.003	1.03	0.0	0.04	12.68	0.00	2.049	9.94	0.00	19.1	80.7	0.2	-4.35	6.22	0.74	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	7NCH	12266	2021-05-04	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.73	2.0	0.05	16.44	0.00	1.951	10.92	0.19	12.4	87.6	0.0	-4.42	1.75	0.65	0.54	1.28	11292	816	12	0	0	0	5796	logfile
✔	7JV2	22491	2021-05-03	2020-08-20	3.5	3.48	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.70	0.0	0.04	15.01	0.00	2.294	15.46	1.32	7.7	92.3	0.0	-0.35	2.24	0.71	0.77	3.64	2151	282	3	0	0	0	0	logfile
✔	6WKT	21708	2021-05-03	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.52	0.0	0.03	16.46	0.00	2.218	10.63	0.00	4.8	95.2	0.0	3.89	1.34	0.64	0.74	3.76	3152	424	4	0	0	0	0	logfile
✔	7JSE	22451	2021-05-04	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.10	0.0	0.09	14.72	0.00	2.167	9.64	0.00	19.6	80.4	0.0	-2.55	2.76	0.74	0.72	—	13288	3168	24	32	0	0	0	logfile
✔	6CoZ	7545	2021-05-03	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.83	0.0	0.04	5.05	0.00	2.337	3.54	0.00	11.5	88.5	0.0	-1.17	1.64	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	7LWQ	23554	2021-05-04	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	6.0	0.09	13.64	0.01	2.529	0.05	0.90	6.5	93.1	0.4	-1.31	0.72	0.71	2.56	3.6	0.005	0.65	0.0	0.04	15.09	0.00	2.104	8.23	0.19	4.1	95.9	0.0	0.07	0.71	0.78	0.80	2.09	19190	2425	6	0	23	0	0	logfile
✔	7LWS	23555	2021-05-05	2021-03-01	3.22	3.43	—	3.4	0.013	1.79	3.0	0.09	12.79	0.01	2.500	0.06	0.50	4.4	95.2	0.4	-0.93	0.74	0.78	3.58	3.4	0.004	0.64	0.0	0.04	14.87	0.00	2.086	5.34	0.15	3.3	96.6	0.1	0.53	1.29	0.75	0.84	3.04	23439	3000	3	0	0	0	0	logfile
✔	5U1D	8482	2021-05-03	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.003	0.76	0.0	0.04	16.37	0.00	2.149	12.31	0.51	2.9	97.0	0.1	1.57	1.34	0.42	0.60	0.97	7815	1168	3	0	0	0	0	logfile
✔	6P6F	20261	2021-05-08	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.005	0.89	0.0	0.05	13.97	0.01	2.266	20.39	0.00	1.7	98.3	0.0	-0.40	1.34	0.74	0.84	—	159840	21060	120	0	0	0	0	logfile

• Page 1 of 244
• next →