Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSE	22451	2023-02-20	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.006	1.04	0.0	0.08	14.36	0.00	2.181	8.70	0.00	15.8	84.2	0.0	-2.47	2.74	0.84	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	3JBS	6478	2023-02-16	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	6WX6	21951	2023-02-26	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.21	0.00	2.020	2.93	0.69	1.2	98.8	0.0	4.75	0.53	0.79	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7N9Q	24259	2023-02-18	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7QK6	14039	2023-02-16	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.59	0.0	0.05	15.99	0.00	2.381	4.46	0.69	5.8	94.2	0.0	-2.24	1.45	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7QVF	14176	2023-02-17	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.005	0.87	0.0	0.06	16.80	0.00	2.168	16.59	1.19	6.6	93.4	0.0	-2.44	3.86	0.40	0.75	3.27	6516	810	6	0	0	0	0	logfile
✔	6CoZ	7545	2023-02-16	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7JSH	22454	2023-02-18	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7TPA	26050	2023-02-24	2022-01-25	3.6	3.99	—	3.6	0.013	1.74	3.0	0.09	12.83	0.01	2.510	0.00	1.11	6.5	92.8	0.8	-1.19	0.84	0.85	2.96	3.6	0.003	0.58	0.0	0.04	13.39	0.00	2.105	4.43	0.17	4.2	95.6	0.2	0.38	0.47	0.84	0.84	2.40	23199	2983	18	0	58	0	0	logfile
✔	7QL2	14061	2023-02-16	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7JG6	22312	2023-02-23	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.91	0.0	0.00	5.77	0.00	2.225	1.33	0.00	12.8	87.2	0.0	-0.80	1.65	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	7QKi	14043	2023-02-18	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.004	0.63	0.0	0.05	11.95	0.00	2.085	5.52	0.00	5.0	95.0	0.0	-1.84	0.77	0.39	0.81	5.60	7074	456	6	0	0	0	3606	logfile
✔	7QL0	14059	2023-02-17	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.003	0.59	0.0	0.05	14.36	0.00	2.094	6.58	0.00	1.0	99.0	0.0	-1.73	1.65	0.41	0.84	6.04	6390	414	6	0	0	0	3258	logfile
✔	7R4T	14316	2023-02-18	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.004	0.55	0.0	0.05	15.87	0.00	2.374	2.12	0.76	2.7	97.3	0.0	-1.45	2.29	0.42	0.89	6.04	7074	456	6	0	0	0	3606	logfile
✔	7QKX	14056	2023-02-18	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.003	0.57	0.0	0.05	13.15	0.00	2.100	3.96	0.00	1.6	98.4	0.0	-1.71	1.18	0.40	0.85	5.25	6822	438	6	0	0	0	3480	logfile
✔	7JG7	22313	2023-02-23	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.23	0.01	2.151	4.26	0.00	15.0	84.9	0.1	-1.98	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	7QKM	14047	2023-02-17	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.002	0.53	0.0	0.05	16.30	0.00	1.981	4.94	0.68	4.4	95.6	0.0	-1.70	1.31	0.39	0.89	5.83	5070	330	6	0	0	0	2634	logfile
✔	7QVC	14174	2023-02-17	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.006	0.78	0.0	0.06	18.05	0.00	2.117	9.84	3.70	6.0	94.0	0.0	-2.38	2.44	0.42	0.90	5.84	3255	405	3	0	0	0	0	logfile
✔	7NCA	12264	2023-02-19	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	12.94	0.00	2.433	0.77	0.39	2.7	97.3	0.0	-2.96	0.76	0.69	0.85	3.43	10428	732	12	0	0	0	5376	logfile
✔	7JV2	22491	2023-02-16	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.90	0.00	2.223	14.03	0.44	5.5	94.5	0.0	-0.83	1.27	0.71	0.77	3.76	2151	282	3	0	0	0	0	logfile

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