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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8P83 | 17540 | 2023-07-16 | 2023-05-31 | 3.87 | 4.82 | 3.91 | 3.8 | 0.003 | 0.66 | 3.0 | 0.06 | 4.70 | 0.00 | 2.470 | 0.84 | 0.00 | 2.0 | 97.9 | 0.1 | 0.35 | 0.81 | 0.58 | — | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 5.70 | 0.01 | 2.230 | 9.10 | 0.00 | 7.0 | 93.0 | 0.0 | -1.97 | 2.83 | 0.85 | 0.58 | — | 35656 | 7036 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P82 | 17539 | 2023-07-12 | 2023-05-31 | 3.36 | 4.33 | 3.37 | 3.4 | 0.013 | 1.11 | 2.0 | 0.09 | 12.80 | 0.01 | 2.221 | 0.89 | 0.07 | 3.8 | 96.0 | 0.2 | -0.97 | 0.84 | 0.70 | 0.97 | 3.4 | 0.002 | 0.64 | 0.0 | 0.04 | 14.65 | 0.00 | 2.109 | 6.13 | 0.11 | 2.6 | 97.4 | 0.0 | 1.76 | 1.81 | 0.85 | 0.70 | 0.93 | 25156 | 3192 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8JJ5 | 36340 | 2023-07-07 | 2023-05-29 | 3.5 | 3.74 | 3.51 | 3.7 | 0.021 | 2.18 | 39.0 | 0.19 | 15.54 | 0.02 | 2.397 | 1.75 | 1.22 | 8.9 | 91.0 | 0.1 | -2.93 | 0.38 | 0.61 | 1.08 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.25 | 0.00 | 2.080 | 16.29 | 0.41 | 6.1 | 93.9 | 0.0 | -0.01 | 1.07 | 0.40 | 0.64 | 0.81 | 13594 | 866 | 10 | 0 | 14 | 0 | 6679 | logfile |
✔ | 8SZB | 40907 | 2023-07-03 | 2023-05-29 | 3.07 | 3.36 | 3.01 | 3.5 | 0.003 | 0.51 | 0.0 | 0.03 | 16.92 | 0.00 | 2.154 | 9.22 | 0.37 | 1.5 | 98.5 | 0.0 | 2.06 | 0.49 | 0.73 | 0.50 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 17.63 | 0.00 | 2.065 | 8.54 | 0.00 | 1.8 | 98.2 | 0.0 | 4.01 | 0.70 | 0.51 | 0.79 | 1.65 | 4962 | 612 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8SZA | 40905 | 2023-07-03 | 2023-05-29 | 2.75 | 3.32 | 2.81 | 3.4 | 0.003 | 0.65 | 0.0 | 0.03 | 14.83 | 0.00 | 2.185 | 8.19 | 0.98 | 0.3 | 99.7 | 0.0 | 2.12 | 0.50 | 0.78 | 1.28 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.68 | 0.00 | 2.280 | 8.99 | 2.16 | 0.7 | 99.3 | 0.0 | 2.68 | 0.49 | 0.50 | 0.78 | 1.33 | 4800 | 606 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 8P6A | 17462 | 2023-07-03 | 2023-05-25 | 3.63 | 3.93 | 3.43 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 17.40 | 0.00 | 2.161 | 10.48 | 0.29 | 2.4 | 97.6 | 0.0 | 2.80 | 0.57 | 0.81 | 1.41 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 17.37 | 0.00 | 2.146 | 11.22 | 0.00 | 3.1 | 96.9 | 0.0 | 2.99 | 0.85 | 0.57 | 0.81 | 1.29 | 3337 | 432 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JCX | 36168 | 2023-07-05 | 2023-05-12 | 3.0 | 3.21 | 3.01 | 3.2 | 0.003 | 0.53 | 0.0 | 0.18 | 11.27 | 0.00 | 2.225 | 5.75 | 0.00 | 4.9 | 95.1 | 0.0 | 0.35 | 0.64 | 0.76 | 2.67 | 3.2 | 0.003 | 0.55 | 1.0 | 0.04 | 13.91 | 0.00 | 2.168 | 6.56 | 1.86 | 5.2 | 94.8 | 0.0 | 0.28 | 1.15 | 0.65 | 0.80 | 2.86 | 10617 | 1512 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JD3 | 36174 | 2023-07-08 | 2023-05-12 | 3.3 | 3.50 | 3.27 | 3.5 | 0.004 | 0.53 | 0.0 | 0.10 | 13.23 | 0.00 | 2.210 | 6.60 | 0.13 | 4.0 | 96.0 | 0.0 | -0.23 | 0.62 | 0.64 | 1.75 | 3.5 | 0.008 | 0.78 | 0.0 | 0.05 | 15.32 | 0.00 | 2.109 | 11.43 | 0.27 | 7.5 | 92.5 | 0.0 | -1.18 | 0.58 | 0.67 | 0.72 | 1.71 | 15770 | 2148 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 8JCV | 36166 | 2023-07-05 | 2023-05-12 | 3.4 | 3.66 | 3.32 | 3.6 | 0.003 | 0.56 | 0.0 | 0.19 | 13.00 | 0.00 | 2.300 | 7.05 | 0.11 | 4.5 | 95.5 | 0.0 | 1.15 | 0.67 | 0.72 | 1.48 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.69 | 0.00 | 2.244 | 9.21 | 0.00 | 5.2 | 94.8 | 0.0 | 0.56 | 0.52 | 0.69 | 0.78 | 1.81 | 10667 | 1514 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JD0 | 36171 | 2023-07-06 | 2023-05-12 | 3.3 | 3.56 | 3.24 | 3.5 | 0.004 | 0.49 | 0.0 | 0.04 | 14.09 | 0.00 | 2.278 | 5.98 | 0.10 | 4.3 | 95.7 | 0.0 | 0.18 | 0.66 | 0.69 | 1.55 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.70 | 0.00 | 2.206 | 9.46 | 0.40 | 5.8 | 94.2 | 0.0 | -0.94 | 0.46 | 0.70 | 0.79 | 2.29 | 11264 | 1532 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 8JD6 | 36177 | 2023-07-08 | 2023-05-12 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 15.12 | 0.00 | 2.218 | 12.40 | 0.35 | 5.9 | 94.0 | 0.0 | -0.74 | 0.62 | 0.65 | 0.86 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.83 | 0.00 | 2.089 | 14.58 | 0.40 | 7.0 | 93.0 | 0.0 | -1.01 | 1.57 | 0.66 | 0.72 | 1.39 | 17192 | 2312 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 8JD5 | 36176 | 2023-07-09 | 2023-05-12 | 3.6 | 3.48 | — | 3.5 | 0.005 | 0.63 | 1.0 | 0.04 | 12.91 | 0.00 | 2.201 | 9.27 | 0.39 | 6.7 | 93.2 | 0.1 | -0.84 | 0.62 | 0.68 | 1.58 | 3.5 | 0.004 | 0.67 | 0.0 | 0.04 | 15.28 | 0.00 | 2.138 | 10.35 | 0.22 | 7.9 | 92.1 | 0.0 | -0.92 | 0.58 | 0.69 | 0.74 | 1.88 | 18028 | 2389 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 8JCZ | 36170 | 2023-07-05 | 2023-05-12 | 3.0 | 3.18 | 2.98 | 3.2 | 0.003 | 0.57 | 0.0 | 0.18 | 12.89 | 0.00 | 2.247 | 9.10 | 0.22 | 4.4 | 95.6 | 0.0 | 0.07 | 0.65 | 0.75 | 2.15 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 14.29 | 0.00 | 2.245 | 7.53 | 1.51 | 6.1 | 93.9 | 0.0 | -0.28 | 0.40 | 0.68 | 0.81 | 2.26 | 10540 | 1504 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JD1 | 36172 | 2023-07-05 | 2023-05-12 | 3.7 | 3.87 | 3.63 | 3.8 | 0.002 | 0.50 | 0.0 | 0.04 | 12.91 | 0.00 | 2.228 | 6.47 | 0.21 | 6.8 | 93.2 | 0.0 | -0.72 | 0.66 | 0.71 | 1.21 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.93 | 0.00 | 2.168 | 11.41 | 0.53 | 7.7 | 92.3 | 0.0 | -0.94 | 0.55 | 0.65 | 0.70 | 1.39 | 10766 | 1508 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 8JCU | 36165 | 2023-07-05 | 2023-05-12 | 2.8 | 3.00 | 2.76 | 3.2 | 0.003 | 0.54 | 0.0 | 0.18 | 11.82 | 0.00 | 2.268 | 5.39 | 0.00 | 4.1 | 95.9 | 0.0 | 0.18 | 0.63 | 0.74 | 2.60 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 14.55 | 0.00 | 2.207 | 6.67 | 2.63 | 4.3 | 95.7 | 0.0 | -0.24 | 0.45 | 0.65 | 0.79 | 2.74 | 10830 | 1527 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JCY | 36169 | 2023-07-05 | 2023-05-12 | 2.9 | 3.07 | 2.88 | 3.1 | 0.003 | 0.53 | 0.0 | 0.17 | 11.20 | 0.00 | 2.200 | 6.04 | 0.00 | 4.2 | 95.8 | 0.0 | 0.76 | 0.64 | 0.71 | 2.52 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 14.03 | 0.00 | 2.173 | 6.19 | 1.74 | 4.2 | 95.8 | 0.0 | 0.37 | 0.40 | 0.68 | 0.78 | 2.24 | 10874 | 1525 | 4 | 0 | 11 | 0 | 0 | logfile |
✔ | 8JD2 | 36173 | 2023-07-05 | 2023-05-12 | 2.8 | 2.97 | 2.79 | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 13.33 | 0.00 | 2.213 | 4.22 | 0.20 | 4.9 | 95.1 | 0.0 | -0.38 | 0.66 | 0.79 | 3.20 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 14.64 | 0.00 | 2.137 | 6.33 | 2.73 | 6.3 | 93.7 | 0.0 | -0.19 | 0.44 | 0.67 | 0.82 | 3.09 | 10730 | 1501 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8JCW | 36167 | 2023-07-05 | 2023-05-12 | 3.0 | 3.17 | 2.95 | 3.1 | 0.003 | 0.61 | 0.0 | 0.17 | 11.92 | 0.00 | 2.218 | 5.90 | 0.22 | 5.5 | 94.5 | 0.0 | 0.47 | 0.69 | 0.77 | 1.98 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 14.63 | 0.00 | 2.158 | 7.04 | 3.48 | 6.1 | 93.9 | 0.1 | 0.09 | 1.17 | 0.71 | 0.83 | 2.58 | 10760 | 1527 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8JD4 | 36175 | 2023-07-05 | 2023-05-12 | 2.9 | 3.04 | 2.81 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 11.99 | 0.00 | 2.289 | 6.36 | 0.20 | 3.6 | 96.4 | 0.0 | -0.19 | 0.70 | 0.79 | 1.70 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 14.64 | 0.00 | 2.161 | 8.87 | 2.13 | 4.8 | 95.2 | 0.1 | 0.41 | 2.18 | 0.73 | 0.85 | 2.61 | 10674 | 1494 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 8SUG | 40765 | 2023-07-05 | 2023-05-12 | 4.2 | 4.70 | 4.24 | 4.6 | 0.002 | 0.73 | 0.0 | 0.04 | 13.57 | 0.00 | 2.137 | 16.90 | 0.13 | 8.4 | 91.3 | 0.3 | -2.39 | 0.51 | 0.77 | — | 4.6 | 0.003 | 0.79 | 0.0 | 0.04 | 13.58 | 0.00 | 1.962 | 22.68 | 0.26 | 9.9 | 89.9 | 0.2 | -0.75 | 0.89 | 0.51 | 0.78 | — | 113355 | 15972 | 33 | 0 | 0 | 0 | 0 | logfile |