Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P83	17540	2023-07-16	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	8P82	17539	2023-07-12	2023-05-31	3.36	4.33	3.37	3.4	0.013	1.11	2.0	0.09	12.80	0.01	2.221	0.89	0.07	3.8	96.0	0.2	-0.97	0.84	0.70	0.97	3.4	0.002	0.64	0.0	0.04	14.65	0.00	2.109	6.13	0.11	2.6	97.4	0.0	1.76	1.81	0.85	0.70	0.93	25156	3192	4	0	6	0	0	logfile
✔	8JJ5	36340	2023-07-07	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	15.54	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.003	0.71	0.0	0.04	16.25	0.00	2.080	16.29	0.41	6.1	93.9	0.0	-0.01	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8SZB	40907	2023-07-03	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.92	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.61	0.0	0.04	17.63	0.00	2.065	8.54	0.00	1.8	98.2	0.0	4.01	0.70	0.51	0.79	1.65	4962	612	12	0	6	0	0	logfile
✔	8SZA	40905	2023-07-03	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	8P6A	17462	2023-07-03	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.003	0.65	0.0	0.04	17.37	0.00	2.146	11.22	0.00	3.1	96.9	0.0	2.99	0.85	0.57	0.81	1.29	3337	432	1	0	0	0	0	logfile
✔	8JCX	36168	2023-07-05	2023-05-12	3.0	3.21	3.01	3.2	0.003	0.53	0.0	0.18	11.27	0.00	2.225	5.75	0.00	4.9	95.1	0.0	0.35	0.64	0.76	2.67	3.2	0.003	0.55	1.0	0.04	13.91	0.00	2.168	6.56	1.86	5.2	94.8	0.0	0.28	1.15	0.65	0.80	2.86	10617	1512	4	0	4	0	0	logfile
✔	8JD3	36174	2023-07-08	2023-05-12	3.3	3.50	3.27	3.5	0.004	0.53	0.0	0.10	13.23	0.00	2.210	6.60	0.13	4.0	96.0	0.0	-0.23	0.62	0.64	1.75	3.5	0.008	0.78	0.0	0.05	15.32	0.00	2.109	11.43	0.27	7.5	92.5	0.0	-1.18	0.58	0.67	0.72	1.71	15770	2148	7	0	5	0	0	logfile
✔	8JCV	36166	2023-07-05	2023-05-12	3.4	3.66	3.32	3.6	0.003	0.56	0.0	0.19	13.00	0.00	2.300	7.05	0.11	4.5	95.5	0.0	1.15	0.67	0.72	1.48	3.6	0.003	0.60	0.0	0.04	14.69	0.00	2.244	9.21	0.00	5.2	94.8	0.0	0.56	0.52	0.69	0.78	1.81	10667	1514	4	0	4	0	0	logfile
✔	8JD0	36171	2023-07-06	2023-05-12	3.3	3.56	3.24	3.5	0.004	0.49	0.0	0.04	14.09	0.00	2.278	5.98	0.10	4.3	95.7	0.0	0.18	0.66	0.69	1.55	3.5	0.003	0.60	0.0	0.04	14.70	0.00	2.206	9.46	0.40	5.8	94.2	0.0	-0.94	0.46	0.70	0.79	2.29	11264	1532	4	0	12	0	0	logfile
✔	8JD6	36177	2023-07-08	2023-05-12	3.4	3.44	—	3.4	0.003	0.56	0.0	0.04	15.12	0.00	2.218	12.40	0.35	5.9	94.0	0.0	-0.74	0.62	0.65	0.86	3.4	0.003	0.60	0.0	0.04	15.83	0.00	2.089	14.58	0.40	7.0	93.0	0.0	-1.01	1.57	0.66	0.72	1.39	17192	2312	8	0	1	0	0	logfile
✔	8JD5	36176	2023-07-09	2023-05-12	3.6	3.48	—	3.5	0.005	0.63	1.0	0.04	12.91	0.00	2.201	9.27	0.39	6.7	93.2	0.1	-0.84	0.62	0.68	1.58	3.5	0.004	0.67	0.0	0.04	15.28	0.00	2.138	10.35	0.22	7.9	92.1	0.0	-0.92	0.58	0.69	0.74	1.88	18028	2389	8	0	10	0	0	logfile
✔	8JCZ	36170	2023-07-05	2023-05-12	3.0	3.18	2.98	3.2	0.003	0.57	0.0	0.18	12.89	0.00	2.247	9.10	0.22	4.4	95.6	0.0	0.07	0.65	0.75	2.15	3.2	0.003	0.57	0.0	0.04	14.29	0.00	2.245	7.53	1.51	6.1	93.9	0.0	-0.28	0.40	0.68	0.81	2.26	10540	1504	4	0	4	0	0	logfile
✔	8JD1	36172	2023-07-05	2023-05-12	3.7	3.87	3.63	3.8	0.002	0.50	0.0	0.04	12.91	0.00	2.228	6.47	0.21	6.8	93.2	0.0	-0.72	0.66	0.71	1.21	3.8	0.003	0.64	0.0	0.04	14.93	0.00	2.168	11.41	0.53	7.7	92.3	0.0	-0.94	0.55	0.65	0.70	1.39	10766	1508	4	0	7	0	0	logfile
✔	8JCU	36165	2023-07-05	2023-05-12	2.8	3.00	2.76	3.2	0.003	0.54	0.0	0.18	11.82	0.00	2.268	5.39	0.00	4.1	95.9	0.0	0.18	0.63	0.74	2.60	3.1	0.003	0.60	0.0	0.04	14.55	0.00	2.207	6.67	2.63	4.3	95.7	0.0	-0.24	0.45	0.65	0.79	2.74	10830	1527	4	0	4	0	0	logfile
✔	8JCY	36169	2023-07-05	2023-05-12	2.9	3.07	2.88	3.1	0.003	0.53	0.0	0.17	11.20	0.00	2.200	6.04	0.00	4.2	95.8	0.0	0.76	0.64	0.71	2.52	3.1	0.002	0.54	0.0	0.04	14.03	0.00	2.173	6.19	1.74	4.2	95.8	0.0	0.37	0.40	0.68	0.78	2.24	10874	1525	4	0	11	0	0	logfile
✔	8JD2	36173	2023-07-05	2023-05-12	2.8	2.97	2.79	3.0	0.002	0.44	0.0	0.04	13.33	0.00	2.213	4.22	0.20	4.9	95.1	0.0	-0.38	0.66	0.79	3.20	3.0	0.003	0.55	0.0	0.04	14.64	0.00	2.137	6.33	2.73	6.3	93.7	0.0	-0.19	0.44	0.67	0.82	3.09	10730	1501	4	0	2	0	0	logfile
✔	8JCW	36167	2023-07-05	2023-05-12	3.0	3.17	2.95	3.1	0.003	0.61	0.0	0.17	11.92	0.00	2.218	5.90	0.22	5.5	94.5	0.0	0.47	0.69	0.77	1.98	3.1	0.003	0.60	0.0	0.04	14.63	0.00	2.158	7.04	3.48	6.1	93.9	0.1	0.09	1.17	0.71	0.83	2.58	10760	1527	4	0	6	0	0	logfile
✔	8JD4	36175	2023-07-05	2023-05-12	2.9	3.04	2.81	3.0	0.003	0.53	0.0	0.04	11.99	0.00	2.289	6.36	0.20	3.6	96.4	0.0	-0.19	0.70	0.79	1.70	3.0	0.003	0.60	0.0	0.04	14.64	0.00	2.161	8.87	2.13	4.8	95.2	0.1	0.41	2.18	0.73	0.85	2.61	10674	1494	4	0	3	0	0	logfile
✔	8SUG	40765	2023-07-05	2023-05-12	4.2	4.70	4.24	4.6	0.002	0.73	0.0	0.04	13.57	0.00	2.137	16.90	0.13	8.4	91.3	0.3	-2.39	0.51	0.77	—	4.6	0.003	0.79	0.0	0.04	13.58	0.00	1.962	22.68	0.26	9.9	89.9	0.2	-0.75	0.89	0.51	0.78	—	113355	15972	33	0	0	0	0	logfile

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