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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GH5 | 0001 | 2023-07-13 | 2018-05-04 | 3.4 | 3.71 | — | 3.4 | 0.033 | 3.30 | 333.0 | 0.22 | 17.29 | 0.02 | 1.847 | 24.49 | 4.29 | 11.0 | 86.7 | 2.3 | -4.34 | 0.89 | 0.88 | 2.50 | 3.4 | 0.005 | 0.84 | 0.0 | 0.04 | 18.31 | 0.00 | 2.135 | 13.17 | 0.66 | 9.5 | 89.5 | 1.0 | -0.99 | 1.34 | 0.88 | 0.86 | 1.77 | 28316 | 3593 | 8 | 92 | 50 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2023-07-13 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 15.53 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.005 | 0.81 | 0.0 | 0.04 | 15.96 | 0.00 | 1.965 | 12.53 | 0.11 | 9.9 | 89.5 | 0.6 | -1.09 | 1.78 | 0.87 | 0.81 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✘ | 6GiQ | 0004 | 2023-07-19 | 2018-05-15 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44120 | 5439 | 42 | 0 | 57 | 0 | 0 | logfile |
✔ | 6GiY | 0008 | 2023-07-13 | 2018-05-15 | 4.3 | 4.14 | — | 4.0 | 0.007 | 1.18 | 0.0 | 0.06 | 10.19 | 0.01 | 2.232 | 6.19 | 0.29 | 12.7 | 87.1 | 0.3 | -5.09 | 0.73 | 0.77 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 11.91 | 0.01 | 2.098 | 11.61 | 0.10 | 10.0 | 89.9 | 0.1 | -2.01 | 0.93 | 0.73 | 0.76 | — | 28969 | 3649 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-07-06 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.57 | 0.01 | 2.086 | 22.39 | 0.00 | 16.4 | 83.4 | 0.1 | -3.83 | 1.16 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ3 | 0010 | 2023-07-08 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 12.36 | 0.01 | 2.209 | 10.28 | 0.00 | 10.8 | 89.2 | 0.0 | -1.74 | 0.76 | 0.71 | 0.78 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GMH | 0031 | 2023-07-20 | 2018-05-26 | 3.1 | 3.78 | 3.06 | 3.2 | 0.006 | 0.97 | 0.0 | 0.06 | 12.73 | 0.01 | 1.921 | 5.48 | 0.53 | 4.8 | 95.1 | 0.1 | -2.86 | 0.83 | 0.81 | 2.87 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 14.76 | 0.00 | 2.066 | 11.03 | 0.24 | 5.2 | 94.7 | 0.0 | 0.11 | 0.71 | 0.83 | 0.83 | 2.29 | 50239 | 6397 | 30 | 106 | 525 | 0 | 0 | logfile |
✔ | 6GML | 0038 | 2023-07-19 | 2018-05-27 | 3.2 | 3.74 | 3.37 | 3.5 | 0.007 | 0.97 | 1.0 | 0.06 | 13.29 | 0.01 | 2.054 | 7.10 | 0.43 | 5.9 | 94.1 | 0.0 | -3.52 | 0.73 | 0.68 | 1.81 | 3.5 | 0.004 | 0.67 | 0.0 | 0.04 | 15.50 | 0.00 | 1.963 | 12.79 | 0.29 | 5.1 | 94.9 | 0.0 | 0.29 | 1.46 | 0.81 | 0.83 | 1.92 | 44827 | 5576 | 28 | 98 | 111 | 0 | 0 | logfile |
✔ | 6GoV | 0043 | 2023-07-16 | 2018-06-04 | 3.7 | 4.02 | 3.65 | 3.9 | 0.008 | 0.93 | 0.0 | 0.06 | 12.68 | 0.01 | 1.963 | 5.69 | 0.25 | 7.7 | 92.2 | 0.1 | -3.76 | 0.79 | 0.79 | 1.97 | 3.9 | 0.002 | 0.60 | 0.0 | 0.04 | 14.81 | 0.00 | 2.098 | 8.94 | 0.11 | 4.6 | 95.4 | 0.0 | -0.10 | 1.50 | 0.82 | 0.80 | 1.21 | 35040 | 4157 | 14 | 117 | 3 | 0 | 0 | logfile |
✔ | 6GSA | 0051 | 2023-07-08 | 2018-06-13 | 4.2 | 5.94 | — | 5.0 | 0.011 | 1.24 | 4.0 | 0.09 | 12.00 | 0.01 | 2.189 | 4.69 | 1.75 | 5.1 | 94.7 | 0.2 | -2.92 | 0.67 | 0.44 | — | 5.0 | 0.003 | 0.73 | 0.0 | 0.04 | 12.56 | 0.00 | 2.145 | 18.82 | 0.00 | 5.2 | 94.8 | 0.0 | -0.02 | 1.21 | 0.83 | 0.74 | — | 16272 | 1999 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GSi | 0056 | 2023-07-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 13.38 | 0.00 | 1.857 | 12.45 | 0.26 | 9.9 | 90.0 | 0.1 | -2.57 | 0.96 | 0.57 | 0.84 | 2.77 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✔ | 6GTC | 0061 | 2023-07-06 | 2018-06-18 | 3.91 | 3.85 | — | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 15.72 | 0.01 | 2.275 | 5.90 | 0.86 | 8.8 | 91.2 | 0.0 | -5.69 | 0.70 | 0.67 | 1.97 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 18.32 | 0.00 | 2.033 | 13.75 | 0.17 | 7.9 | 92.1 | 0.0 | -2.79 | 1.14 | 0.71 | 0.69 | 1.56 | 11931 | 1280 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2023-07-04 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.008 | 0.99 | 0.0 | 0.07 | 20.73 | 0.00 | 1.909 | 27.42 | 0.00 | 22.2 | 77.8 | 0.0 | -3.42 | 0.97 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6GTE | 0063 | 2023-07-05 | 2018-06-18 | 4.07 | 3.99 | — | 3.9 | 0.009 | 1.11 | 0.0 | 0.06 | 16.15 | 0.01 | 2.232 | 8.08 | 0.75 | 15.6 | 84.3 | 0.1 | -5.76 | 0.73 | 0.71 | — | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 16.34 | 0.00 | 2.190 | 13.00 | 0.00 | 7.8 | 92.2 | 0.0 | -2.93 | 0.83 | 0.73 | 0.69 | — | 10872 | 1274 | 4 | 67 | 0 | 0 | 0 | logfile |
✔ | 6GTF | 0064 | 2023-07-05 | 2018-06-18 | 3.63 | 3.94 | — | 3.8 | 0.010 | 1.17 | 0.0 | 0.07 | 16.19 | 0.01 | 2.030 | 10.45 | 0.43 | 15.5 | 84.5 | 0.0 | -5.84 | 0.72 | 0.64 | 1.89 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 17.95 | 0.00 | 2.170 | 14.44 | 0.43 | 7.1 | 92.9 | 0.0 | -3.13 | 1.43 | 0.74 | 0.64 | 1.97 | 10871 | 1280 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6GTG | 0065 | 2023-07-06 | 2018-06-18 | 3.27 | 3.35 | — | 3.3 | 0.009 | 1.07 | 0.0 | 0.06 | 14.80 | 0.01 | 2.051 | 6.65 | 0.69 | 14.5 | 85.5 | 0.0 | -5.96 | 0.68 | 0.75 | 2.90 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.96 | 0.00 | 2.037 | 14.30 | 0.17 | 10.4 | 89.6 | 0.0 | -3.36 | 1.14 | 0.69 | 0.76 | 2.10 | 12538 | 1298 | 8 | 91 | 4 | 3 | 0 | logfile |
✔ | 6GVE | 0071 | 2023-07-15 | 2018-06-20 | 3.9 | 4.13 | 3.97 | 4.0 | 0.010 | 0.99 | 0.0 | 0.06 | 10.07 | 0.01 | 2.133 | 7.04 | 0.11 | 4.2 | 95.8 | 0.0 | -3.72 | 0.77 | 0.75 | 1.99 | 4.0 | 0.003 | 0.73 | 0.0 | 0.05 | 14.69 | 0.00 | 2.116 | 15.28 | 0.56 | 4.3 | 95.7 | 0.0 | -0.71 | 1.32 | 0.81 | 0.83 | 1.55 | 33412 | 4272 | 24 | 0 | 8 | 0 | 0 | logfile |
✔ | 6GXP | 0083 | 2023-07-22 | 2018-06-27 | 4.4 | 5.60 | — | 5.1 | 0.003 | 0.80 | 6.0 | 0.04 | 14.00 | 0.01 | 1.608 | 5.45 | 0.27 | 8.3 | 91.2 | 0.5 | -4.12 | 0.84 | 0.79 | — | 5.0 | 0.005 | 0.74 | 0.0 | 0.04 | 16.15 | 0.01 | 1.967 | 36.94 | 0.02 | 11.1 | 88.7 | 0.1 | -2.14 | 1.96 | 0.87 | 0.85 | — | 147637 | 6392 | 56 | 4555 | 1 | 0 | 0 | logfile |
✔ | 6GY6 | 0088 | 2023-07-11 | 2018-06-28 | 4.0 | 3.98 | — | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 10.55 | 0.01 | 2.234 | 4.84 | 1.08 | 2.6 | 97.4 | 0.0 | -4.40 | 0.90 | 0.84 | — | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 14.56 | 0.00 | 2.122 | 11.89 | 0.25 | 2.1 | 97.9 | 0.0 | 2.42 | 0.93 | 0.90 | 0.85 | — | 72462 | 9139 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYB | 0089 | 2023-07-05 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.03 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.65 | 0.0 | 0.05 | 14.20 | 0.00 | 2.142 | 7.18 | 0.40 | 6.3 | 93.7 | 0.0 | -1.08 | 0.55 | 0.81 | 0.89 | 3.74 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |