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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YE1 | 33761 | 2023-07-14 | 2022-07-05 | 3.7 | 3.92 | 3.55 | 3.8 | 0.006 | 0.53 | 0.0 | 0.04 | 14.64 | 0.00 | 2.071 | 26.07 | 0.00 | 4.1 | 95.9 | 0.0 | -3.09 | 0.83 | 0.81 | 1.25 | 3.8 | 0.002 | 0.53 | 0.0 | 0.04 | 17.43 | 0.00 | 1.954 | 42.47 | 0.41 | 6.9 | 93.1 | 0.0 | -0.68 | 1.25 | 0.85 | 0.84 | 1.37 | 29964 | 3657 | 11 | 114 | 4 | 0 | 12 | logfile |
✔ | 8BC3 | 15961 | 2023-07-08 | 2022-10-14 | 2.1 | 2.00 | 2.14 | 2.2 | 0.014 | 2.07 | 0.0 | 0.11 | 17.99 | 0.02 | 2.310 | 1.34 | 11.95 | 3.3 | 96.7 | 0.0 | -4.28 | 0.71 | 0.83 | 5.67 | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.44 | 0.00 | 2.168 | 4.01 | 0.63 | 0.6 | 99.4 | 0.0 | 1.85 | 0.51 | 0.76 | 0.87 | 5.99 | 16880 | 2170 | 30 | 0 | 10 | 500 | 0 | logfile |
✔ | 6JBQ | 9792 | 2023-07-13 | 2019-01-26 | 4.02 | 4.10 | 3.96 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 16.33 | 0.01 | 2.197 | 4.02 | 0.39 | 3.9 | 96.1 | 0.0 | -4.13 | 0.77 | 0.79 | — | 4.0 | 0.002 | 0.60 | 0.0 | 0.04 | 16.59 | 0.00 | 2.156 | 8.17 | 0.07 | 3.7 | 96.3 | 0.0 | -0.42 | 1.59 | 0.79 | 0.81 | — | 28163 | 3347 | 10 | 101 | 3 | 0 | 0 | logfile |
✔ | 6U9F | 20696 | 2023-07-09 | 2019-09-08 | 4.35 | 4.41 | — | 4.3 | 0.009 | 1.10 | 0.0 | 0.06 | 9.47 | 0.01 | 2.193 | 7.59 | 0.15 | 13.4 | 86.6 | 0.0 | -4.71 | 0.78 | 0.78 | — | 4.3 | 0.002 | 0.66 | 0.0 | 0.05 | 12.14 | 0.00 | 2.090 | 12.25 | 0.00 | 8.4 | 91.6 | 0.0 | -2.09 | 0.88 | 0.79 | 0.79 | — | 19179 | 2550 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DD2 | 27332 | 2023-07-08 | 2022-06-17 | 2.9 | 2.71 | 2.84 | 2.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.83 | 0.01 | 2.041 | 5.80 | 0.00 | 4.5 | 95.5 | 0.0 | 0.66 | 0.76 | 0.86 | 4.28 | 2.9 | 0.002 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 2.178 | 8.30 | 2.07 | 2.8 | 97.2 | 0.0 | 0.67 | 0.94 | 0.75 | 0.89 | 3.81 | 17459 | 2121 | 17 | 0 | 28 | 0 | 0 | logfile |
✔ | 8DBG | 27283 | 2023-07-07 | 2022-06-14 | 2.2 | 2.20 | 2.25 | 2.2 | 0.007 | 0.69 | 0.0 | 0.05 | 15.18 | 0.00 | 1.958 | 4.92 | 1.97 | 3.4 | 96.6 | 0.0 | 0.54 | 0.71 | 0.86 | 6.29 | 2.2 | 0.002 | 0.48 | 0.0 | 0.05 | 16.08 | 0.00 | 1.996 | 5.40 | 2.23 | 3.3 | 96.7 | 0.0 | 1.17 | 0.31 | 0.74 | 0.90 | 5.48 | 14442 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |
✔ | 7TD3 | 25822 | 2023-07-05 | 2021-12-30 | 3.0 | 3.04 | — | 3.0 | 0.007 | 0.79 | 3.0 | 0.06 | 12.07 | 0.00 | 2.059 | 3.00 | 0.81 | 4.2 | 95.8 | 0.0 | -0.45 | 0.62 | 0.82 | 3.73 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 15.53 | 0.00 | 2.149 | 5.51 | 1.90 | 2.3 | 97.7 | 0.0 | 1.31 | 1.18 | 0.61 | 0.83 | 2.58 | 7035 | 909 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X3V | 22034 | 2023-07-08 | 2020-05-21 | 3.5 | 3.71 | 3.49 | 3.6 | 0.006 | 0.65 | 0.0 | 0.05 | 13.52 | 0.00 | 2.136 | 7.47 | 0.58 | 4.5 | 95.5 | 0.0 | -2.83 | 0.76 | 0.88 | 3.52 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 15.37 | 0.00 | 2.135 | 7.38 | 0.42 | 3.1 | 96.9 | 0.0 | -0.24 | 0.35 | 0.72 | 0.87 | 3.28 | 17426 | 2121 | 16 | 0 | 27 | 0 | 0 | logfile |
✔ | 7VYF | 32203 | 2023-07-13 | 2021-11-14 | 2.8 | 2.86 | — | 2.8 | 0.007 | 0.75 | 0.0 | 0.05 | 13.89 | 0.01 | 2.078 | 6.44 | 0.03 | 3.9 | 96.0 | 0.1 | -0.15 | 0.74 | 0.88 | 4.24 | 2.8 | 0.002 | 0.52 | 0.0 | 0.04 | 16.03 | 0.00 | 2.169 | 6.28 | 0.95 | 3.5 | 96.4 | 0.0 | 0.37 | 0.32 | 0.75 | 0.89 | 3.80 | 28456 | 3543 | 27 | 0 | 17 | 0 | 0 | logfile |
✔ | 7EGM | 31136 | 2023-07-09 | 2021-03-24 | 3.6 | 3.90 | — | 3.7 | 0.005 | 0.81 | 0.0 | 0.05 | 15.46 | 0.01 | 1.440 | 6.88 | 8.61 | 6.3 | 93.4 | 0.3 | -3.86 | 0.81 | 0.81 | 1.89 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 16.02 | 0.00 | 2.132 | 8.21 | 0.53 | 5.9 | 94.0 | 0.0 | 0.67 | 0.71 | 0.81 | 0.80 | 1.10 | 19819 | 2431 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WG7 | 32479 | 2023-07-12 | 2021-12-28 | 4.0 | 4.39 | — | 4.2 | 0.005 | 0.88 | 0.0 | 0.06 | 14.25 | 0.01 | 2.237 | 6.84 | 0.07 | 7.8 | 92.2 | 0.0 | -2.10 | 0.86 | 0.78 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.05 | 15.70 | 0.00 | 2.121 | 12.40 | 0.14 | 7.6 | 92.4 | 0.0 | -1.24 | 1.13 | 0.87 | 0.78 | — | 27041 | 3313 | 25 | 0 | 73 | 0 | 0 | logfile |
✔ | 7VSH | 32111 | 2023-07-06 | 2021-10-26 | 3.4 | 3.00 | 3.26 | 3.3 | 0.005 | 1.10 | 0.0 | 0.04 | 13.55 | 0.01 | 1.964 | 7.02 | 0.25 | 6.1 | 93.9 | 0.0 | -1.53 | 0.70 | 0.83 | 3.17 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 15.29 | 0.00 | 1.969 | 7.52 | 0.17 | 5.3 | 94.7 | 0.0 | -0.39 | 0.39 | 0.70 | 0.86 | 2.58 | 10992 | 1352 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 6TAS | 10426 | 2023-07-04 | 2019-10-30 | 2.75 | 2.69 | — | 3.8 | 0.006 | 0.87 | 4.0 | 0.06 | 14.84 | 0.01 | 2.094 | 12.58 | 0.11 | 7.7 | 92.3 | 0.0 | -1.28 | 0.53 | 0.75 | 2.28 | 2.7 | 0.002 | 0.58 | 0.0 | 0.03 | 17.99 | 0.00 | 2.213 | 5.25 | 3.06 | 3.8 | 96.2 | 0.0 | 1.04 | 0.57 | 0.58 | 0.80 | 2.21 | 8552 | 1044 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NSC | 12564 | 2023-07-05 | 2021-03-05 | 3.3 | 3.46 | 3.32 | 3.4 | 0.005 | 0.71 | 0.0 | 0.04 | 14.50 | 0.00 | 1.732 | 9.65 | 0.10 | 8.3 | 91.7 | 0.0 | -1.46 | 0.77 | 0.81 | 2.53 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 16.15 | 0.00 | 2.076 | 7.96 | 0.31 | 5.9 | 94.1 | 0.0 | -0.21 | 0.89 | 0.76 | 0.82 | 1.32 | 9327 | 1230 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KG7 | 9975 | 2023-07-19 | 2019-07-11 | 3.8 | 4.04 | — | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 12.77 | 0.00 | 2.223 | 9.26 | 0.00 | 5.7 | 94.3 | 0.0 | -1.77 | 0.76 | 0.83 | 2.35 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 14.38 | 0.00 | 2.110 | 8.96 | 0.16 | 4.6 | 95.4 | 0.0 | 0.87 | 0.42 | 0.76 | 0.83 | 1.82 | 44892 | 5451 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7PTY | 13643 | 2023-07-06 | 2021-09-27 | 4.63 | 5.10 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.76 | 0.00 | 2.199 | 25.20 | 0.00 | 10.9 | 89.1 | 0.0 | -1.41 | 0.88 | 0.76 | — | 4.5 | 0.002 | 0.63 | 0.0 | 0.04 | 13.82 | 0.00 | 2.163 | 16.37 | 0.00 | 7.9 | 92.1 | 0.0 | -0.80 | 0.39 | 0.89 | 0.77 | — | 13433 | 1715 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AoZ | 11848 | 2023-07-14 | 2020-10-15 | 2.85 | 3.19 | — | 3.0 | 0.005 | 0.65 | 0.0 | 0.05 | 12.75 | 0.00 | 2.045 | 3.00 | 2.42 | 5.8 | 94.2 | 0.0 | -0.31 | 0.87 | 0.87 | 4.19 | 3.0 | 0.002 | 0.58 | 0.0 | 0.04 | 14.90 | 0.00 | 2.055 | 7.20 | 1.82 | 5.0 | 95.0 | 0.0 | 0.47 | 1.20 | 0.87 | 0.88 | 3.39 | 31512 | 3782 | 15 | 42 | 5 | 0 | 0 | logfile |
✔ | 6X3S | 22031 | 2023-07-08 | 2020-05-21 | 3.12 | 3.37 | 3.20 | 3.3 | 0.006 | 0.66 | 0.0 | 0.05 | 13.75 | 0.01 | 2.119 | 9.53 | 0.05 | 4.3 | 95.7 | 0.0 | -2.03 | 0.76 | 0.85 | 3.77 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 15.72 | 0.00 | 2.175 | 8.57 | 0.21 | 3.4 | 96.6 | 0.0 | 0.21 | 0.53 | 0.73 | 0.87 | 3.22 | 17407 | 2121 | 17 | 0 | 23 | 0 | 0 | logfile |
✔ | 7FJN | 31624 | 2023-07-12 | 2021-08-04 | 3.25 | 3.88 | — | 3.3 | 0.012 | 1.56 | 4.0 | 0.09 | 12.45 | 0.02 | 1.560 | 6.11 | 2.63 | 7.5 | 92.1 | 0.4 | -1.21 | 0.77 | 0.67 | 1.19 | 3.3 | 0.002 | 0.61 | 0.0 | 0.04 | 13.38 | 0.00 | 2.173 | 7.05 | 0.14 | 3.8 | 96.1 | 0.1 | 0.45 | 1.01 | 0.85 | 0.84 | 2.14 | 26824 | 3418 | 10 | 0 | 25 | 0 | 0 | logfile |
✔ | 7SoE | 25268 | 2023-07-12 | 2021-10-29 | 2.8 | 2.87 | 2.84 | 2.8 | 0.010 | 1.29 | 0.0 | 0.07 | 9.88 | 0.01 | 2.416 | 1.06 | 0.15 | 2.0 | 98.0 | 0.0 | 0.29 | 0.74 | 0.80 | 3.95 | 2.8 | 0.002 | 0.60 | 0.0 | 0.05 | 13.26 | 0.00 | 2.198 | 2.81 | 1.79 | 1.7 | 98.3 | 0.0 | 0.97 | 1.02 | 0.73 | 0.84 | 3.06 | 25947 | 3783 | 15 | 0 | 57 | 0 | 0 | logfile |