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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SGS | 10183 | 2023-07-04 | 2019-08-05 | 3.2 | 3.29 | 3.18 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.19 | 0.00 | 2.011 | 5.87 | 0.14 | 2.8 | 97.2 | 0.0 | -3.26 | 0.57 | 0.69 | 0.97 | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 15.68 | 0.00 | 1.989 | 7.26 | 0.45 | 2.8 | 97.2 | 0.0 | 0.98 | 1.37 | 0.64 | 0.84 | 2.36 | 54156 | 3528 | 8 | 0 | 0 | 0 | 27338 | logfile |
✔ | 7TYM | 26185 | 2023-07-06 | 2022-02-13 | 3.4 | 3.43 | — | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.175 | 8.12 | 0.00 | 7.1 | 92.8 | 0.1 | -1.35 | 0.73 | 0.81 | 2.62 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 16.28 | 0.00 | 2.159 | 8.66 | 0.15 | 8.0 | 92.0 | 0.0 | -1.76 | 1.12 | 0.73 | 0.82 | 3.21 | 12112 | 1542 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SE6 | 10152 | 2023-07-06 | 2019-07-29 | 3.5 | 4.16 | — | 3.9 | 0.010 | 1.00 | 0.0 | 0.06 | 28.15 | 0.01 | 2.247 | 3.86 | 0.00 | 1.2 | 98.8 | 0.0 | -3.83 | 0.88 | 0.85 | 1.92 | 3.9 | 0.004 | 0.65 | 0.0 | 0.03 | 28.61 | 0.00 | 2.082 | 12.77 | 0.47 | 1.5 | 98.5 | 0.0 | 1.17 | 0.58 | 0.86 | 0.83 | 1.17 | 12068 | 771 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7PZP | 13735 | 2023-07-14 | 2021-10-13 | 3.5 | 3.29 | — | 3.2 | 0.007 | 1.02 | 0.0 | 0.07 | 14.30 | 0.01 | 2.128 | 6.10 | 0.00 | 2.0 | 98.0 | 0.0 | 2.29 | 0.72 | 0.67 | 1.53 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.08 | 0.00 | 2.069 | 11.78 | 0.24 | 2.0 | 98.0 | 0.0 | 2.22 | 2.69 | 0.74 | 0.72 | 1.90 | 15602 | 1978 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DKi | 27489 | 2023-07-03 | 2022-07-05 | 3.32 | 3.57 | 3.29 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 13.79 | 0.00 | 2.204 | 9.78 | 0.21 | 4.6 | 95.4 | 0.0 | -0.62 | 0.62 | 0.84 | 2.61 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 2.212 | 10.59 | 0.21 | 6.6 | 93.4 | 0.0 | -0.10 | 0.92 | 0.61 | 0.86 | 2.61 | 4365 | 552 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PV2 | 13664 | 2023-07-12 | 2021-10-01 | 3.2 | 3.39 | — | 3.3 | 0.011 | 0.71 | 0.0 | 0.08 | 14.85 | 0.00 | 1.971 | 4.86 | 0.00 | 3.9 | 96.1 | 0.0 | -3.84 | 0.75 | 0.82 | 3.34 | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 16.71 | 0.00 | 2.164 | 6.26 | 0.22 | 3.8 | 96.2 | 0.0 | -0.11 | 0.60 | 0.76 | 0.87 | 2.77 | 25440 | 3084 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D1M | 27135 | 2023-07-07 | 2022-05-27 | 3.11 | 3.41 | 3.10 | 3.4 | 0.006 | 0.87 | 0.0 | 0.06 | 15.34 | 0.00 | 2.396 | 12.79 | 1.18 | 2.7 | 97.1 | 0.3 | 1.27 | 0.63 | 0.86 | 3.50 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 16.53 | 0.00 | 2.258 | 7.99 | 0.00 | 1.8 | 98.2 | 0.0 | 1.40 | 0.92 | 0.61 | 0.87 | 2.41 | 15590 | 1880 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oH0 | 12890 | 2023-07-04 | 2021-05-07 | 3.9 | 4.55 | — | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 13.94 | 0.01 | 2.046 | 29.13 | 0.26 | 11.9 | 87.9 | 0.1 | -5.70 | 0.80 | 0.71 | 1.16 | 4.3 | 0.003 | 0.80 | 0.0 | 0.05 | 15.78 | 0.01 | 2.171 | 23.20 | 0.26 | 8.9 | 91.1 | 0.0 | -3.35 | 2.03 | 0.79 | 0.69 | 1.17 | 6830 | 870 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2023-07-10 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.9 | 0.003 | 0.74 | 0.0 | 0.04 | 13.07 | 0.00 | 2.157 | 15.69 | 0.00 | 9.7 | 90.2 | 0.1 | -1.41 | 3.45 | 0.74 | 0.50 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RKX | 24506 | 2023-07-04 | 2021-07-22 | 3.1 | 3.43 | 3.11 | 3.4 | 0.005 | 0.71 | 0.0 | 0.05 | 12.43 | 0.01 | 2.137 | 4.07 | 0.00 | 3.9 | 96.1 | 0.0 | -0.60 | 0.72 | 0.88 | 4.25 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 14.55 | 0.00 | 2.127 | 4.79 | 0.45 | 3.3 | 96.6 | 0.1 | 0.46 | 0.34 | 0.67 | 0.88 | 3.23 | 8559 | 1126 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K24 | 22642 | 2023-07-07 | 2020-09-08 | 2.9 | 3.02 | 2.70 | 3.0 | 0.005 | 0.77 | 0.0 | 0.05 | 18.36 | 0.01 | 2.240 | 10.74 | 12.54 | 7.6 | 91.8 | 0.6 | -3.66 | 0.53 | 0.85 | 3.11 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.52 | 0.00 | 2.191 | 10.30 | 3.60 | 6.5 | 93.5 | 0.0 | -0.93 | 1.66 | 0.51 | 0.85 | 2.82 | 13750 | 1765 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X2C | 22001 | 2023-07-11 | 2020-05-20 | 3.2 | 3.70 | 3.21 | 3.6 | 0.013 | 1.81 | 6.0 | 0.09 | 13.39 | 0.02 | 2.550 | 0.20 | 3.17 | 5.3 | 94.4 | 0.3 | -1.74 | 0.79 | 0.81 | 3.48 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.81 | 0.00 | 2.226 | 5.41 | 0.08 | 3.7 | 96.3 | 0.0 | 0.19 | 1.24 | 0.80 | 0.85 | 3.02 | 22800 | 2913 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K22 | 22640 | 2023-07-10 | 2020-09-08 | 3.2 | 3.37 | 3.09 | 3.3 | 0.007 | 0.76 | 0.0 | 0.05 | 17.16 | 0.00 | 2.087 | 11.85 | 8.26 | 11.0 | 88.9 | 0.2 | -4.13 | 0.53 | 0.85 | 3.20 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 16.53 | 0.00 | 2.098 | 9.67 | 0.17 | 8.6 | 91.4 | 0.0 | -1.70 | 1.61 | 0.50 | 0.85 | 2.85 | 21665 | 2750 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CPJ | 30431 | 2023-07-20 | 2020-08-07 | 3.3 | 3.39 | — | 3.3 | 0.010 | 0.92 | 0.0 | 0.05 | 15.91 | 0.02 | 1.356 | 12.80 | 0.29 | 13.8 | 85.7 | 0.5 | -4.55 | 0.73 | 0.85 | 2.28 | 3.3 | 0.003 | 0.64 | 0.0 | 0.03 | 15.77 | 0.01 | 2.007 | 12.26 | 0.75 | 9.3 | 90.4 | 0.3 | -1.94 | 0.40 | 0.73 | 0.86 | 1.87 | 145941 | 5951 | 58 | 4639 | 0 | 0 | 0 | logfile |
✘ | 7YQ6 | 34021 | 2023-07-07 | 2022-08-05 | 4.18 | 4.67 | 4.33 | 4.4 | 0.019 | 1.34 | 0.0 | 0.06 | 17.92 | 0.03 | 2.222 | 7.46 | 0.35 | 8.5 | 91.5 | 0.0 | -3.94 | 0.84 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13990 | 1592 | 4 | 48 | 0 | 0 | 0 | logfile |
✔ | 7K25 | 22643 | 2023-07-07 | 2020-09-08 | 2.9 | 3.06 | 2.74 | 3.0 | 0.009 | 0.94 | 0.0 | 0.05 | 17.78 | 0.01 | 2.084 | 10.20 | 9.18 | 8.9 | 90.6 | 0.4 | -3.19 | 0.48 | 0.85 | 3.95 | 3.0 | 0.005 | 0.72 | 0.0 | 0.05 | 18.13 | 0.01 | 2.121 | 9.27 | 5.44 | 8.0 | 91.9 | 0.1 | -0.95 | 1.21 | 0.48 | 0.86 | 3.45 | 14005 | 1796 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K23 | 22641 | 2023-07-10 | 2020-09-08 | 3.3 | 3.44 | 3.16 | 3.4 | 0.007 | 0.81 | 0.0 | 0.05 | 17.18 | 0.00 | 1.620 | 19.51 | 5.40 | 9.3 | 90.5 | 0.2 | -3.86 | 0.32 | 0.62 | 2.33 | 3.4 | 0.004 | 0.68 | 0.0 | 0.05 | 17.19 | 0.00 | 2.101 | 9.50 | 0.25 | 8.9 | 91.0 | 0.1 | -1.79 | 1.66 | 0.41 | 0.85 | 2.68 | 21923 | 2781 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E27 | 27827 | 2023-07-03 | 2022-08-14 | 3.4 | 3.73 | 3.56 | 3.7 | 0.010 | 1.10 | 0.0 | 0.07 | 14.24 | 0.01 | 2.297 | 2.69 | 0.34 | 1.2 | 98.8 | 0.0 | -0.92 | 0.71 | 0.84 | 2.46 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.90 | 0.00 | 2.259 | 5.38 | 0.17 | 2.5 | 97.5 | 0.0 | 0.41 | 0.54 | 0.69 | 0.84 | 2.46 | 5371 | 676 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D44 | 27174 | 2023-07-05 | 2022-06-01 | 2.8 | 3.00 | 2.84 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 16.99 | 0.01 | 2.232 | 6.47 | 1.73 | 5.7 | 94.3 | 0.0 | 0.38 | 0.71 | 0.81 | 3.53 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 17.54 | 0.00 | 2.213 | 8.04 | 1.91 | 5.5 | 94.5 | 0.0 | 1.22 | 1.09 | 0.68 | 0.81 | 3.11 | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGT | 10184 | 2023-07-20 | 2019-08-05 | 3.46 | 3.54 | 3.37 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 12.56 | 0.00 | 2.205 | 8.28 | 0.29 | 4.5 | 95.4 | 0.1 | -4.71 | 0.65 | 0.79 | 2.46 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.39 | 0.00 | 1.861 | 8.95 | 0.44 | 5.0 | 95.0 | 0.0 | -0.76 | 2.29 | 0.67 | 0.83 | 2.15 | 52180 | 3408 | 5 | 0 | 0 | 0 | 26299 | logfile |