Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5MM2	3528	2021-08-07	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.49	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	6RJU	4906	2021-08-07	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	6KKT	0702	2021-08-07	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.23	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	20.0	0.012	1.28	0.0	0.04	12.32	0.00	1.528	11.69	1.25	2.9	97.1	0.0	0.60	0.59	0.14	0.05	0.53	8416	1074	4	0	24	0	0	logfile
✔	6GYL	0091	2021-08-11	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.13	0.16	6.2	92.7	1.1	-3.33	0.32	0.00	—	3.4	0.009	1.08	3.0	0.05	14.77	0.01	1.987	22.06	0.02	7.0	92.7	0.2	-1.50	1.50	0.52	0.22	—	43409	5250	30	112	11	0	0	logfile
✘	7A5K	11646	2021-08-09	2020-08-21	3.7	3.12	3.69	40.0	0.014	1.28	3.0	0.06	17.54	0.01	1.211	7.11	0.05	10.7	88.9	0.3	-4.20	0.03	0.00	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	171126	14163	108	2644	165	0	0	logfile
✔	6KKR	0701	2021-08-07	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.69	0.0	0.04	12.81	0.00	2.153	10.40	2.27	3.4	96.6	0.0	0.87	1.66	0.12	0.11	-0.13	8416	1074	4	0	24	0	0	logfile
✘	6MiX	9132	2021-08-11	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.71	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✘	7oJH	12951	2021-08-07	2021-05-15	3.1	2.57	4.81	20.0	0.016	1.03	0.0	0.29	10.92	0.00	2.239	2.98	0.52	2.9	97.1	0.0	0.37	0.00	0.00	-0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8999	1138	4	0	5	0	0	logfile
✔	6EK0	3883	2021-08-18	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.004	0.85	1.0	0.04	17.77	0.01	1.187	16.66	2.54	8.5	91.4	0.0	-2.50	1.48	0.12	0.16	0.09	219596	11719	128	5861	415	61	0	logfile
✘	5AJ0	2875	2021-08-17	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	218559	11738	106	5776	355	0	0	logfile
✘	3JB8	6382	2021-08-24	2015-08-04	3.6	3.59	—	96.0	0.011	1.54	0.0	0.07	11.99	0.01	0.235	173.86	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245880	33000	180	0	0	0	0	logfile
✘	5X1G	6701	2021-08-07	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	6Q97	4476	2021-08-18	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	0.95	1.0	0.05	20.63	0.01	1.093	23.29	0.04	10.2	89.8	0.0	-3.70	2.61	0.31	0.25	0.22	156609	6124	72	5051	441	2	0	logfile
✔	6T59	10380	2021-08-13	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.72	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.005	0.93	1.0	0.05	19.61	0.01	1.077	24.98	0.68	8.6	91.3	0.0	-2.51	2.17	0.61	0.61	0.52	143047	7383	64	3890	225	0	0	logfile
✔	6EU1	3956	2021-08-11	2017-10-27	3.4	3.40	—	6.6	0.005	1.14	0.0	0.06	12.93	0.01	1.732	6.51	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.010	1.22	2.0	0.05	16.24	0.01	1.971	16.77	0.14	14.5	85.4	0.2	-3.40	1.67	0.61	0.59	0.65	40547	5012	24	43	7	0	0	logfile
✔	6FLQ	4275	2021-08-10	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	0.94	1.0	0.04	16.93	0.01	2.051	14.94	0.62	8.5	91.4	0.1	-1.49	2.13	0.25	0.20	-0.02	30201	3868	10	91	3	0	0	logfile
✔	5GAK	3227	2021-08-10	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.007	1.04	4.0	0.05	19.52	0.01	1.924	28.53	0.38	9.9	89.8	0.4	-2.67	1.87	0.33	0.24	0.21	128975	6434	50	3597	234	0	0	logfile
✔	6RED	4850	2021-08-10	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.99	0.0	0.05	16.22	0.01	1.891	20.83	2.47	4.9	95.0	0.1	-1.40	1.53	0.25	0.17	0.32	33899	4503	25	0	10	0	0	logfile
✔	7CHH	30374	2021-08-10	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.86	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.4	0.009	0.98	1.0	0.05	16.08	0.01	2.074	14.32	0.06	5.4	94.6	0.0	-1.31	1.42	0.22	0.13	0.43	29029	3704	17	0	41	0	0	logfile
✔	5MSH	3565	2021-08-07	2017-01-04	4.25	3.96	—	20.0	0.014	1.57	0.0	0.07	9.56	0.01	2.323	2.36	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.009	1.39	0.0	0.05	14.14	0.01	2.117	18.91	0.00	7.0	92.8	0.2	-1.38	2.05	0.05	0.17	—	4287	551	2	0	0	0	0	logfile

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