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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D9N | 27267 | 2023-02-18 | 2022-06-10 | 4.4 | 4.74 | 3.88 | 34.0 | 0.003 | 0.60 | 0.0 | 0.04 | 13.21 | 0.00 | 2.107 | 2.77 | 0.38 | 5.8 | 94.2 | 0.0 | -0.81 | 0.28 | -0.07 | — | 20.0 | 0.002 | 0.66 | 0.0 | 0.04 | 13.34 | 0.00 | 2.212 | 4.39 | 0.00 | 4.6 | 95.4 | 0.0 | 0.37 | 0.56 | 0.40 | -0.02 | — | 7186 | 902 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D43 | 27173 | 2023-02-18 | 2022-06-01 | 2.88 | 3.12 | 2.94 | 5.9 | 0.004 | 0.83 | 1.0 | 0.06 | 18.40 | 0.01 | 1.371 | 8.43 | 5.48 | 6.5 | 93.5 | 0.0 | -1.48 | 0.17 | -0.02 | 0.37 | 3.2 | 0.004 | 0.91 | 0.0 | 0.05 | 18.51 | 0.01 | 2.131 | 21.79 | 3.34 | 7.1 | 92.8 | 0.1 | -1.69 | 2.70 | 0.41 | 0.35 | 1.05 | 7763 | 962 | 5 | 0 | 6 | 1 | 0 | logfile |
✔ | 6VYB | 22748 | 2023-02-24 | 2020-02-25 | 3.2 | 3.61 | 4.19 | 10.0 | 0.014 | 1.36 | 1.0 | 0.09 | 10.35 | 0.01 | 2.299 | 0.53 | 0.13 | 2.4 | 97.5 | 0.1 | 0.50 | -0.01 | -0.01 | 0.12 | 3.4 | 0.003 | 0.66 | 0.0 | 0.05 | 12.68 | 0.00 | 2.123 | 10.83 | 0.09 | 4.0 | 96.0 | 0.1 | -0.55 | 1.03 | 0.03 | 0.09 | 0.43 | 22365 | 2875 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-02-16 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 5LNK | 4481 | 2023-02-24 | 2016-08-04 | 3.9 | 3.95 | 17.72 | 71.0 | 0.007 | 1.05 | 0.0 | 1.04 | 10.85 | 0.01 | 2.038 | 25.42 | 0.32 | 12.6 | 86.9 | 0.5 | -4.85 | 0.01 | 0.00 | 0.13 | 40.0 | 0.009 | 1.71 | 0.0 | 0.31 | 13.69 | 0.01 | 1.425 | 16.41 | 0.33 | 10.3 | 89.5 | 0.3 | -1.27 | 0.81 | 0.05 | 0.14 | 0.19 | 63760 | 7918 | 61 | 0 | 144 | 0 | 0 | logfile |
✔ | 6ZGE | 23580 | 2023-02-26 | 2020-06-18 | 2.6 | 2.72 | 2.67 | 20.0 | 0.009 | 0.91 | 0.0 | 0.06 | 12.46 | 0.01 | 2.344 | 2.22 | 0.73 | 4.7 | 95.2 | 0.1 | -0.97 | 0.06 | 0.00 | 0.14 | 20.0 | 0.005 | 0.78 | 0.0 | 0.05 | 13.62 | 0.00 | 2.128 | 9.50 | 1.01 | 4.8 | 95.2 | 0.0 | -0.90 | 0.80 | 0.12 | 0.12 | 0.37 | 26991 | 3294 | 39 | 0 | 81 | 48 | 0 | logfile |
✘ | 5LNK | 4479 | 2023-02-24 | 2016-08-04 | 3.9 | 3.83 | 7.93 | 96.0 | 0.007 | 1.05 | 0.0 | 1.04 | 10.85 | 0.01 | 2.038 | 25.42 | 0.32 | 12.6 | 86.9 | 0.5 | -4.85 | 0.00 | 0.00 | -0.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63760 | 7918 | 61 | 0 | 144 | 0 | 0 | logfile |
✘ | 6RiC | 11824 | 2023-02-27 | 2019-04-23 | 2.8 | 1.94 | — | 49.0 | 0.006 | 0.75 | 0.0 | 0.05 | 14.01 | 0.01 | 2.068 | 5.10 | 0.03 | 3.5 | 96.5 | 0.0 | -4.16 | 0.05 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29677 | 3663 | 12 | 0 | 5 | 0 | 0 | logfile |
✘ | 6ZGE | 23581 | 2023-02-26 | 2020-06-18 | 2.6 | 2.44 | 2.70 | 10.0 | 0.009 | 0.91 | 0.0 | 0.06 | 12.46 | 0.01 | 2.344 | 2.22 | 0.73 | 4.7 | 95.2 | 0.1 | -0.97 | 0.03 | 0.00 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26991 | 3294 | 39 | 0 | 81 | 48 | 0 | logfile |
✘ | 6RoH | 32512 | 2023-02-20 | 2019-05-13 | 2.8 | 2.20 | — | 40.0 | 0.006 | 0.88 | 0.0 | 0.05 | 13.67 | 0.01 | 1.709 | 4.00 | 0.23 | 3.4 | 96.6 | 0.0 | -4.73 | 0.04 | 0.00 | 0.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11758 | 1449 | 7 | 0 | 9 | 2 | 0 | logfile |
✔ | 6VXX | 24693 | 2023-02-24 | 2020-02-25 | 2.8 | 3.28 | 2.89 | 39.0 | 0.016 | 1.35 | 0.0 | 0.09 | 10.67 | 0.01 | 2.389 | 0.81 | 0.23 | 2.4 | 97.6 | 0.0 | 0.27 | 0.07 | 0.00 | 0.14 | 2.8 | 0.003 | 0.69 | 0.0 | 0.05 | 13.86 | 0.00 | 2.095 | 12.22 | 2.00 | 3.9 | 96.1 | 0.0 | -0.28 | 1.68 | 0.14 | 0.11 | 0.11 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-02-25 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 13.07 | 0.01 | 1.990 | 16.76 | 0.27 | 4.6 | 95.2 | 0.2 | -1.37 | 1.67 | 0.33 | 0.21 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✘ | 6ZCA | 31485 | 2023-02-26 | 2020-06-10 | 4.2 | 4.22 | — | 4.7 | 0.003 | 0.63 | 0.0 | 0.04 | 13.46 | 0.00 | 2.127 | 13.88 | 0.03 | 7.8 | 92.1 | 0.1 | -3.26 | -0.03 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28721 | 3592 | 8 | 0 | 49 | 0 | 0 | logfile |
✘ | 6BAJ | 12043 | 2023-02-25 | 2017-10-13 | 3.2 | 3.27 | — | 20.0 | 0.008 | 1.40 | 0.0 | 0.06 | 15.64 | 0.01 | 2.131 | 6.74 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.01 | 0.00 | 0.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✔ | 6UZZ | 33318 | 2023-02-21 | 2019-11-16 | 3.1 | 3.28 | 3.51 | 36.0 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.02 | 0.00 | 0.27 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 14.00 | 0.00 | 2.048 | 10.48 | 0.12 | 3.1 | 96.9 | 0.0 | 1.34 | 2.50 | 0.07 | 0.13 | -0.03 | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SC1 | 26879 | 2023-02-27 | 2021-09-26 | 3.2 | 3.82 | 3.39 | 20.0 | 0.006 | 0.60 | 0.0 | 0.05 | 14.85 | 0.00 | 2.169 | 10.07 | 0.06 | 4.0 | 96.0 | 0.0 | -0.55 | 0.14 | 0.01 | -0.05 | 3.3 | 0.003 | 0.66 | 0.0 | 0.05 | 16.70 | 0.00 | 2.082 | 13.14 | 0.37 | 3.8 | 96.2 | 0.0 | -0.67 | 0.87 | 0.20 | 0.14 | 0.03 | 29415 | 3705 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 7D77 | 32838 | 2023-02-18 | 2020-10-03 | 2.9 | 3.07 | — | 20.0 | 0.008 | 0.78 | 0.0 | 0.06 | 13.51 | 0.00 | 2.107 | 8.48 | 0.21 | 3.7 | 96.3 | 0.0 | -2.58 | 0.07 | 0.01 | 0.37 | 3.0 | 0.005 | 0.85 | 0.0 | 0.05 | 15.51 | 0.01 | 2.082 | 17.53 | 2.15 | 5.8 | 94.1 | 0.1 | -0.58 | 1.02 | 0.14 | 0.18 | 0.47 | 8785 | 1105 | 7 | 0 | 7 | 1 | 0 | logfile |
✔ | 7XMX | 33307 | 2023-02-26 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.011 | 1.29 | 7.0 | 0.09 | 12.50 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.003 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.027 | 11.86 | 0.35 | 5.9 | 94.0 | 0.1 | -1.06 | 1.13 | 0.36 | 0.17 | 0.19 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2023-02-16 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2023-02-24 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 16.02 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.77 | 0.00 | 2.117 | 17.29 | 2.69 | 7.5 | 92.4 | 0.1 | -1.54 | 1.60 | 0.34 | 0.15 | 0.46 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |