Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5MM2	3528	2022-07-03	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.80	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6KKR	0701	2022-07-03	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.99	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.77	0.0	0.04	13.11	0.00	2.105	13.63	2.15	4.1	95.9	0.0	0.35	1.64	0.12	0.11	0.38	8416	1074	4	0	24	0	0	logfile
✔	6GYL	0091	2022-07-07	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.28	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.009	1.01	3.0	0.05	14.53	0.01	1.407	24.14	0.02	6.3	93.4	0.3	-1.66	1.22	0.50	0.18	—	43409	5250	30	112	11	0	0	logfile
✘	7oJH	12951	2022-07-03	2021-05-15	3.1	2.57	4.80	20.0	0.011	0.90	0.0	0.05	11.01	0.00	2.239	2.98	0.52	2.9	97.1	0.0	0.37	0.00	0.00	-0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8999	1138	4	0	5	0	0	logfile
✘	6MiX	9132	2022-07-07	2018-09-20	3.6	4.57	—	14.0	0.007	1.18	0.0	0.07	16.40	0.01	2.212	9.89	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✘	6KKT	0702	2022-07-03	2019-07-27	2.9	2.94	—	7.1	0.010	1.15	0.0	0.06	11.12	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8416	1074	4	0	24	0	0	logfile
✔	6EU1	3956	2022-07-07	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.40	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	6T59	10380	2022-07-07	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.88	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.006	1.03	4.0	0.05	19.37	0.01	0.984	28.80	0.63	9.2	90.7	0.1	-2.66	1.99	0.57	0.55	0.42	143047	7383	64	3890	225	0	0	logfile
✘	6Q97	4476	2022-07-11	2018-12-17	3.9	3.69	—	20.0	0.010	1.20	0.0	0.15	18.82	0.01	1.157	7.03	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	156609	6124	72	5051	441	2	0	logfile
✘	7oMM	12990	2022-07-04	2021-05-24	3.4	3.83	—	20.0	0.010	1.47	6.0	0.10	18.84	0.01	1.819	11.39	16.45	9.4	90.1	0.5	-2.70	0.09	0.01	0.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13981	1794	4	0	0	0	0	logfile
✘	5X1G	6701	2022-07-02	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	6FLQ	4275	2022-07-06	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	1.04	1.0	0.04	16.84	0.01	1.605	17.76	0.04	8.4	91.5	0.1	-1.51	1.95	0.24	0.17	0.16	30201	3868	10	91	3	0	0	logfile
✘	6RBE	4794	2022-07-04	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✘	5GAK	3227	2022-07-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.84	0.01	0.816	23.97	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	128975	6434	50	3597	234	0	0	logfile
✔	6RED	4850	2022-07-06	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.95	1.0	0.04	16.14	0.01	1.576	21.96	2.38	4.8	95.0	0.2	-1.22	0.93	0.24	0.15	0.26	33899	4503	25	0	10	0	0	logfile
✔	6Qi8	4552	2022-07-04	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.30	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.79	0.0	0.04	17.50	0.00	2.186	11.19	0.38	6.1	93.9	0.0	-1.55	1.45	0.30	0.19	0.26	14789	1907	12	0	6	0	0	logfile
✔	5MSH	3565	2022-07-03	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.19	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.009	1.40	0.0	0.05	13.33	0.01	2.113	15.84	0.00	6.4	93.4	0.2	-0.82	2.65	0.04	0.13	—	4287	551	2	0	0	0	0	logfile
✘	5YWP	6855	2022-07-04	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	48.83	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19561	2588	10	0	0	0	0	logfile
✔	7EGB	31111	2022-07-03	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.23	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	10.0	0.008	1.04	2.0	0.05	16.80	0.01	1.824	19.80	0.45	7.8	92.0	0.2	-1.26	1.09	0.41	0.19	0.15	113098	13887	63	138	18	0	0	logfile

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