Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D9N	27267	2023-08-10	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.34	0.00	2.212	4.39	0.00	4.6	95.4	0.0	0.37	0.56	0.40	-0.02	—	7186	902	2	0	0	0	0	logfile
✔	8D43	27173	2023-08-10	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	6RJU	4906	2023-08-09	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	8A1S	15086	2023-08-14	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.76	0.0	0.05	12.92	0.01	2.069	15.85	0.36	4.4	95.5	0.2	-1.00	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✘	6MiX	9132	2023-08-25	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.79	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✔	6GYL	0091	2023-08-25	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.27	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.003	0.78	0.0	0.04	14.55	0.01	2.062	20.07	0.00	6.0	93.7	0.2	-1.26	1.24	0.50	0.18	—	43409	5250	30	112	11	0	0	logfile
✘	5X1G	6701	2023-08-09	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	7XMX	33307	2023-08-20	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.55	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.70	0.0	0.04	14.46	0.00	2.060	11.54	0.19	5.7	94.2	0.1	-1.12	1.15	0.33	0.16	0.18	28727	3700	12	0	24	0	0	logfile
✔	6T59	10380	2023-08-25	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.80	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.003	0.82	0.0	0.04	19.21	0.01	1.027	22.23	0.57	6.7	93.3	0.0	-2.56	2.15	0.61	0.61	0.53	143047	7383	64	3890	225	0	0	logfile
✔	8GWB	34308	2023-08-17	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.33	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	6EU1	3956	2023-08-25	2017-10-27	3.4	3.40	—	6.6	0.005	1.14	0.0	0.06	12.93	0.01	1.732	6.52	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.004	0.95	0.0	0.05	16.86	0.01	2.023	16.43	0.59	16.6	83.1	0.3	-3.85	1.95	0.68	0.68	1.02	40547	5012	24	43	7	0	0	logfile
✔	6RED	4850	2023-08-22	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.004	0.80	0.0	0.05	15.95	0.00	1.867	19.50	2.41	5.4	94.5	0.1	-0.98	1.03	0.25	0.16	0.28	33899	4503	25	0	10	0	0	logfile
✔	7CHH	30374	2023-08-20	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.16	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.2	0.012	1.23	0.0	0.06	16.28	0.01	1.926	22.20	0.55	8.8	91.2	0.0	-2.20	1.50	0.21	0.15	0.35	29029	3704	17	0	41	0	0	logfile
✔	6FLQ	4275	2023-08-21	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.003	0.76	0.0	0.04	16.91	0.00	1.971	14.51	0.26	8.9	91.0	0.1	-1.55	2.04	0.27	0.21	0.19	30201	3868	10	91	3	0	0	logfile
✔	5MSH	3565	2023-08-09	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.003	0.76	0.0	0.05	12.62	0.01	2.155	14.78	0.00	6.1	93.8	0.2	-0.92	2.67	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	6Qi8	4552	2023-08-13	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	7EGB	31111	2023-08-11	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	5GAK	3227	2023-08-17	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	7XoV	33360	2023-08-10	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.98	0.0	0.09	10.84	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.003	0.92	0.0	0.04	15.30	0.00	2.179	10.94	0.90	4.0	95.9	0.1	0.04	1.71	0.48	0.61	1.04	8218	1036	5	0	1	1	0	logfile
✔	8FD5	29002	2023-08-09	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile

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