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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5MM2 | 3528 | 2022-07-03 | 2016-12-08 | 2.7 | 12.53 | 1.51 | — | 0.011 | 1.29 | 0.0 | 0.07 | 10.78 | 0.01 | 1.325 | 19.80 | 0.54 | 12.1 | 87.0 | 0.8 | -3.96 | -0.08 | -0.03 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6605 | 854 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2022-07-02 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 6KKR | 0701 | 2022-07-03 | 2019-07-27 | 2.9 | 2.91 | — | 20.0 | 0.008 | 1.10 | 0.0 | 0.06 | 10.99 | 0.01 | 2.348 | 3.23 | 0.23 | 3.9 | 96.1 | 0.0 | -3.53 | 0.05 | 0.00 | -0.07 | 2.8 | 0.003 | 0.77 | 0.0 | 0.04 | 13.11 | 0.00 | 2.105 | 13.63 | 2.15 | 4.1 | 95.9 | 0.0 | 0.35 | 1.64 | 0.12 | 0.11 | 0.38 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2022-07-07 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.28 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.009 | 1.01 | 3.0 | 0.05 | 14.53 | 0.01 | 1.407 | 24.14 | 0.02 | 6.3 | 93.4 | 0.3 | -1.66 | 1.22 | 0.50 | 0.18 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✘ | 7oJH | 12951 | 2022-07-03 | 2021-05-15 | 3.1 | 2.57 | 4.80 | 20.0 | 0.011 | 0.90 | 0.0 | 0.05 | 11.01 | 0.00 | 2.239 | 2.98 | 0.52 | 2.9 | 97.1 | 0.0 | 0.37 | 0.00 | 0.00 | -0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8999 | 1138 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6MiX | 9132 | 2022-07-07 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.18 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.89 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KKT | 0702 | 2022-07-03 | 2019-07-27 | 2.9 | 2.94 | — | 7.1 | 0.010 | 1.15 | 0.0 | 0.06 | 11.12 | 0.01 | 2.343 | 4.35 | 0.34 | 3.6 | 96.4 | 0.0 | -3.62 | 0.12 | 0.00 | 0.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6EU1 | 3956 | 2022-07-07 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.13 | 0.0 | 0.06 | 12.93 | 0.01 | 1.732 | 6.56 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | 3.3 | 0.013 | 1.36 | 3.0 | 0.05 | 16.40 | 0.01 | 1.726 | 25.40 | 0.21 | 17.8 | 81.9 | 0.3 | -4.08 | 2.02 | 0.48 | 0.41 | 0.16 | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✔ | 6T59 | 10380 | 2022-07-07 | 2019-10-15 | 3.11 | 3.19 | 3.02 | 7.3 | 0.011 | 0.83 | 0.0 | 0.05 | 17.10 | 0.00 | 1.148 | 10.88 | 0.76 | 8.9 | 91.0 | 0.1 | -5.04 | 0.22 | 0.01 | 0.07 | 3.1 | 0.006 | 1.03 | 4.0 | 0.05 | 19.37 | 0.01 | 0.984 | 28.80 | 0.63 | 9.2 | 90.7 | 0.1 | -2.66 | 1.99 | 0.57 | 0.55 | 0.42 | 143047 | 7383 | 64 | 3890 | 225 | 0 | 0 | logfile |
✘ | 6Q97 | 4476 | 2022-07-11 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.010 | 1.20 | 0.0 | 0.15 | 18.82 | 0.01 | 1.157 | 7.03 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✘ | 7oMM | 12990 | 2022-07-04 | 2021-05-24 | 3.4 | 3.83 | — | 20.0 | 0.010 | 1.47 | 6.0 | 0.10 | 18.84 | 0.01 | 1.819 | 11.39 | 16.45 | 9.4 | 90.1 | 0.5 | -2.70 | 0.09 | 0.01 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13981 | 1794 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2022-07-02 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2022-07-06 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.6 | 0.008 | 1.04 | 1.0 | 0.04 | 16.84 | 0.01 | 1.605 | 17.76 | 0.04 | 8.4 | 91.5 | 0.1 | -1.51 | 1.95 | 0.24 | 0.17 | 0.16 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-07-04 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5GAK | 3227 | 2022-07-05 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.84 | 0.01 | 0.816 | 23.97 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 6RED | 4850 | 2022-07-06 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.89 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.008 | 0.95 | 1.0 | 0.04 | 16.14 | 0.01 | 1.576 | 21.96 | 2.38 | 4.8 | 95.0 | 0.2 | -1.22 | 0.93 | 0.24 | 0.15 | 0.26 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2022-07-04 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.30 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.79 | 0.0 | 0.04 | 17.50 | 0.00 | 2.186 | 11.19 | 0.38 | 6.1 | 93.9 | 0.0 | -1.55 | 1.45 | 0.30 | 0.19 | 0.26 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5MSH | 3565 | 2022-07-03 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.56 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 3.19 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.7 | 0.009 | 1.40 | 0.0 | 0.05 | 13.33 | 0.01 | 2.113 | 15.84 | 0.00 | 6.4 | 93.4 | 0.2 | -0.82 | 2.65 | 0.04 | 0.13 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5YWP | 6855 | 2022-07-04 | 2017-11-29 | 4.6 | 5.26 | — | 20.0 | 0.005 | 0.98 | 0.0 | 0.05 | 9.48 | 0.01 | 2.023 | 48.83 | 0.00 | 7.3 | 92.1 | 0.6 | -3.63 | 0.12 | 0.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19561 | 2588 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2022-07-03 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.42 | 0.01 | 1.322 | 21.23 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 10.0 | 0.008 | 1.04 | 2.0 | 0.05 | 16.80 | 0.01 | 1.824 | 19.80 | 0.45 | 7.8 | 92.0 | 0.2 | -1.26 | 1.09 | 0.41 | 0.19 | 0.15 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |