Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D9N	27267	2023-02-18	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.34	0.00	2.212	4.39	0.00	4.6	95.4	0.0	0.37	0.56	0.40	-0.02	—	7186	902	2	0	0	0	0	logfile
✔	8D43	27173	2023-02-18	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.83	1.0	0.06	18.40	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.91	0.0	0.05	18.51	0.01	2.131	21.79	3.34	7.1	92.8	0.1	-1.69	2.70	0.41	0.35	1.05	7763	962	5	0	6	1	0	logfile
✔	6VYB	22748	2023-02-24	2020-02-25	3.2	3.61	4.19	10.0	0.014	1.36	1.0	0.09	10.35	0.01	2.299	0.53	0.13	2.4	97.5	0.1	0.50	-0.01	-0.01	0.12	3.4	0.003	0.66	0.0	0.05	12.68	0.00	2.123	10.83	0.09	4.0	96.0	0.1	-0.55	1.03	0.03	0.09	0.43	22365	2875	18	0	59	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	5LNK	4481	2023-02-24	2016-08-04	3.9	3.95	17.72	71.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.01	0.00	0.13	40.0	0.009	1.71	0.0	0.31	13.69	0.01	1.425	16.41	0.33	10.3	89.5	0.3	-1.27	0.81	0.05	0.14	0.19	63760	7918	61	0	144	0	0	logfile
✔	6ZGE	23580	2023-02-26	2020-06-18	2.6	2.72	2.67	20.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.06	0.00	0.14	20.0	0.005	0.78	0.0	0.05	13.62	0.00	2.128	9.50	1.01	4.8	95.2	0.0	-0.90	0.80	0.12	0.12	0.37	26991	3294	39	0	81	48	0	logfile
✘	5LNK	4479	2023-02-24	2016-08-04	3.9	3.83	7.93	96.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.00	0.00	-0.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63760	7918	61	0	144	0	0	logfile
✘	6RiC	11824	2023-02-27	2019-04-23	2.8	1.94	—	49.0	0.006	0.75	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.05	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29677	3663	12	0	5	0	0	logfile
✘	6ZGE	23581	2023-02-26	2020-06-18	2.6	2.44	2.70	10.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.03	0.00	0.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26991	3294	39	0	81	48	0	logfile
✘	6RoH	32512	2023-02-20	2019-05-13	2.8	2.20	—	40.0	0.006	0.88	0.0	0.05	13.67	0.01	1.709	4.00	0.23	3.4	96.6	0.0	-4.73	0.04	0.00	0.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11758	1449	7	0	9	2	0	logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	8A1S	15086	2023-02-25	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.79	0.0	0.05	13.07	0.01	1.990	16.76	0.27	4.6	95.2	0.2	-1.37	1.67	0.33	0.21	—	67152	8528	32	0	32	0	0	logfile
✘	6ZCA	31485	2023-02-26	2020-06-10	4.2	4.22	—	4.7	0.003	0.63	0.0	0.04	13.46	0.00	2.127	13.88	0.03	7.8	92.1	0.1	-3.26	-0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28721	3592	8	0	49	0	0	logfile
✘	6BAJ	12043	2023-02-25	2017-10-13	3.2	3.27	—	20.0	0.008	1.40	0.0	0.06	15.64	0.01	2.131	6.74	1.74	6.6	93.0	0.4	-4.66	0.01	0.00	0.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24318	3042	7	0	42	1	0	logfile
✔	6UZZ	33318	2023-02-21	2019-11-16	3.1	3.28	3.51	36.0	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.02	0.00	0.27	3.1	0.003	0.66	0.0	0.04	14.00	0.00	2.048	10.48	0.12	3.1	96.9	0.0	1.34	2.50	0.07	0.13	-0.03	15832	1984	12	0	8	0	0	logfile
✔	7SC1	26879	2023-02-27	2021-09-26	3.2	3.82	3.39	20.0	0.006	0.60	0.0	0.05	14.85	0.00	2.169	10.07	0.06	4.0	96.0	0.0	-0.55	0.14	0.01	-0.05	3.3	0.003	0.66	0.0	0.05	16.70	0.00	2.082	13.14	0.37	3.8	96.2	0.0	-0.67	0.87	0.20	0.14	0.03	29415	3705	12	0	45	0	0	logfile
✔	7D77	32838	2023-02-18	2020-10-03	2.9	3.07	—	20.0	0.008	0.78	0.0	0.06	13.51	0.00	2.107	8.48	0.21	3.7	96.3	0.0	-2.58	0.07	0.01	0.37	3.0	0.005	0.85	0.0	0.05	15.51	0.01	2.082	17.53	2.15	5.8	94.1	0.1	-0.58	1.02	0.14	0.18	0.47	8785	1105	7	0	7	1	0	logfile
✔	7XMX	33307	2023-02-26	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.68	0.0	0.04	14.28	0.00	2.027	11.86	0.35	5.9	94.0	0.1	-1.06	1.13	0.36	0.17	0.19	28727	3700	12	0	24	0	0	logfile
✘	5X1G	6701	2023-02-16	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile

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