Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V0Y	26953	2022-11-29	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.003	0.59	0.0	0.04	19.66	0.00	2.059	10.09	2.70	1.6	98.4	0.0	1.08	0.36	0.63	0.86	3.29	4454	558	3	0	0	1	0	logfile
✔	7V0X	26952	2022-11-29	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	7.75	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.003	0.54	0.0	0.04	19.08	0.00	2.178	8.99	5.05	4.6	95.4	0.0	1.72	0.46	0.61	0.88	3.39	2818	375	1	0	0	0	0	logfile
✔	7V0M	26944	2022-11-29	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	4.65	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.48	0.0	0.04	18.25	0.00	2.193	6.29	2.58	3.3	96.7	0.0	1.93	0.24	0.56	0.88	4.32	3724	483	4	0	0	60	0	logfile
✘	7ZR8	14886	2022-11-29	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.45	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3693	471	4	0	1	0	0	logfile
✔	7USB	26731	2022-11-29	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.63	0.0	0.05	13.28	0.00	2.383	4.82	0.00	4.5	95.5	0.0	-1.64	0.58	0.61	0.83	5.47	1661	213	3	0	5	0	0	logfile
✔	7US9	26729	2022-11-29	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.94	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.65	0.0	0.07	12.21	0.01	2.268	7.40	0.00	3.1	96.9	0.0	-0.01	1.47	0.61	0.77	3.67	1127	145	3	0	4	0	0	logfile
✔	7XLT	33286	2022-11-29	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4985	431	4	80	0	0	0	logfile
✔	7URi	26713	2022-11-29	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	23.80	0.01	2.074	24.37	0.00	0.0	0.0	0.0	—	1.69	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URM	26714	2022-11-29	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.17	0.0	0.05	22.99	0.01	1.988	30.29	0.00	0.0	0.0	0.0	—	1.70	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7URE	26710	2022-11-29	2022-04-21	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5450	678	6	0	3	0	0	logfile
✔	7XiZ	33213	2022-11-29	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✔	7UNQ	26629	2022-11-29	2022-04-11	3.4	3.80	3.38	3.5	0.003	0.63	1.0	0.05	13.87	0.00	2.233	10.08	1.17	9.0	90.0	1.0	-1.44	0.55	0.80	2.08	3.6	0.004	0.66	0.0	0.04	15.03	0.00	2.210	9.37	0.29	9.0	90.6	0.4	-1.22	0.53	0.55	0.89	1.18	3528	486	1	1	0	0	0	logfile
✔	7UNT	26632	2022-11-29	2022-04-11	3.6	3.69	3.38	3.4	0.002	0.60	0.0	0.05	14.28	0.00	2.356	6.56	0.00	9.1	90.5	0.4	-1.58	0.47	0.73	1.84	3.5	0.004	0.67	0.0	0.05	15.69	0.00	2.256	9.21	0.70	10.3	89.4	0.2	-1.22	0.66	0.49	0.84	1.39	3270	472	1	1	0	0	0	logfile
✔	7UN5	26613	2022-11-29	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	12.34	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.75	0.0	0.05	15.16	0.00	2.232	12.34	0.77	10.3	89.7	0.0	-3.94	0.50	0.35	0.74	4.69	4380	620	10	0	0	0	0	logfile
✔	7UMQ	26607	2022-11-29	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	3.14	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.003	0.80	0.0	0.04	14.16	0.00	2.326	16.18	1.54	10.3	89.7	0.0	-4.95	3.38	0.43	0.75	4.26	4380	620	10	0	0	0	0	logfile
✔	7XH8	33191	2022-11-29	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.87	0.0	0.04	15.24	0.01	2.176	19.59	3.22	6.5	93.5	0.0	-0.91	2.01	0.67	0.74	1.72	3161	404	3	0	0	0	0	logfile
✔	7UL5	26592	2022-11-29	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.36	0.00	2.338	1.47	0.37	1.4	98.6	0.0	2.78	0.29	0.66	0.87	3.19	2773	371	2	0	0	0	0	logfile
✔	7UL2	26589	2022-11-29	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.54	0.0	0.04	14.14	0.00	2.266	2.21	0.42	0.3	99.7	0.0	2.53	1.31	0.66	0.84	2.79	2624	347	3	0	2	13	0	logfile
✔	7UL4	26591	2022-11-29	2022-04-03	2.8	2.99	2.86	3.0	0.010	1.08	0.0	0.06	12.51	0.01	2.222	2.52	0.00	2.1	97.9	0.0	1.05	0.65	0.80	4.17	3.1	0.003	0.59	0.0	0.04	14.90	0.00	2.270	2.73	1.38	1.2	98.8	0.0	2.14	0.42	0.61	0.81	3.26	2524	351	3	0	1	4	0	logfile
✔	7UiU	26553	2022-11-29	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	4.19	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.95	0.0	0.04	17.47	0.00	2.262	11.74	1.67	6.0	94.0	0.0	-1.79	1.38	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile

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