Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JMH	22394	2021-01-07	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.38	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	4.3	0.005	1.21	22.0	0.05	14.43	0.01	1.973	22.73	7.87	12.0	87.8	0.2	-3.15	2.10	0.81	0.66	—	120756	13500	12	0	3608	0	0	logfile
✔	7JM7	22389	2021-01-06	2020-07-31	2.82	3.04	—	3.0	0.004	0.78	0.0	0.19	13.32	0.01	1.957	5.41	1.17	2.1	97.9	0.0	1.63	0.53	0.76	2.53	3.0	0.002	0.61	0.0	0.12	12.85	0.00	2.047	6.28	0.07	2.4	97.6	0.0	1.84	0.54	0.55	0.77	2.67	28596	1802	16	0	38	36	14054	logfile
✔	7JMJ	22396	2021-01-07	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.84	0.62	11.3	88.5	0.3	-4.67	0.56	0.32	—	4.4	0.005	1.20	16.0	0.05	14.78	0.01	1.981	21.26	7.64	10.6	89.1	0.2	-3.00	1.67	0.80	0.66	—	120756	13500	12	0	3608	0	0	logfile
✔	7JMi	22395	2021-01-08	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.44	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	4.4	0.004	1.11	12.0	0.05	13.57	0.01	2.013	20.71	5.54	10.9	88.9	0.2	-2.73	1.03	0.83	0.71	—	120756	13500	12	0	3608	0	0	logfile
✔	7JMF	22392	2021-01-07	2020-07-31	4.5	5.06	—	4.7	0.005	0.99	0.0	0.05	10.23	0.01	1.373	8.03	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	7.9	0.005	1.27	24.0	0.05	15.52	0.01	2.035	23.06	10.74	11.5	88.1	0.4	-3.38	1.75	0.72	0.46	—	120756	13500	12	0	3608	0	0	logfile
✔	7JM6	22386	2021-01-06	2020-07-31	2.92	2.96	—	2.9	0.005	0.79	0.0	0.18	13.49	0.00	1.907	5.82	0.72	2.3	97.7	0.0	1.30	0.58	0.81	3.97	2.9	0.003	0.52	0.0	0.04	13.39	0.00	1.943	6.01	0.00	2.3	97.7	0.0	1.69	1.15	0.59	0.82	3.71	21084	1334	6	0	12	72	10504	logfile
✔	7JMG	22393	2021-01-08	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.33	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	4.6	0.004	1.06	12.0	0.05	13.57	0.01	2.064	20.07	5.46	10.4	89.6	0.1	-2.87	1.65	0.83	0.71	—	120756	13500	12	0	3608	0	0	logfile
✔	7JMC	22391	2021-01-07	2020-07-31	2.5	2.76	2.68	2.7	0.009	0.75	0.0	0.06	13.91	0.01	2.249	2.74	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	2.7	0.002	0.49	0.0	0.04	14.30	0.00	2.170	5.65	0.90	1.4	98.6	0.0	3.71	0.57	0.62	0.83	4.10	39828	2304	36	0	144	168	18576	logfile
✔	7JLW	22382	2021-01-07	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.05	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.002	0.48	0.0	0.04	15.49	0.00	2.070	6.86	1.23	0.8	99.2	0.0	3.32	1.01	0.64	0.83	4.06	40284	2316	36	0	132	204	18720	logfile
✔	7CN9	30419	2021-01-06	2020-07-30	4.7	4.78	—	4.7	0.010	1.16	0.0	0.07	15.31	0.01	1.927	46.00	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.005	0.87	0.0	0.05	13.39	0.01	1.986	24.94	0.04	13.9	86.0	0.1	-3.21	1.40	0.51	0.71	—	24052	3058	19	0	56	0	0	logfile
✔	7JM3	22384	2021-01-15	2020-07-30	3.4	3.43	—	3.4	0.013	0.96	0.0	0.06	15.30	0.01	0.521	21.42	0.00	10.1	89.5	0.4	-6.47	0.55	0.72	1.95	3.4	0.003	0.69	0.0	0.04	15.12	0.00	1.974	11.02	0.04	7.4	92.6	0.0	-0.84	1.28	0.59	0.79	2.78	235260	15060	60	0	0	0	118860	logfile
✔	7CN2	30414	2021-01-07	2020-07-29	3.43	3.94	—	4.0	0.006	1.06	5.0	0.06	15.71	0.01	1.385	8.80	4.47	7.9	91.5	0.6	-3.95	0.37	0.80	2.16	3.9	0.003	0.68	0.0	0.04	13.82	0.00	2.135	8.97	0.06	7.3	92.5	0.1	-1.65	0.74	0.36	0.78	2.42	32841	4233	18	0	0	0	0	logfile
✔	6ZXJ	11522	2021-01-07	2020-07-29	3.5	3.86	—	3.8	0.016	1.30	3.0	0.07	12.15	0.01	2.048	17.98	0.26	8.3	91.1	0.6	-3.10	0.69	0.79	2.28	3.8	0.003	0.70	0.0	0.05	12.50	0.00	2.011	9.47	0.00	3.8	96.2	0.0	-0.29	0.64	0.68	0.78	2.07	38244	5099	9	0	0	0	0	logfile
✔	6ZXK	11523	2021-01-07	2020-07-29	3.8	4.20	—	4.0	0.011	1.21	2.0	0.07	12.01	0.01	1.950	20.26	0.34	7.9	91.7	0.4	-2.91	0.70	0.76	1.72	4.1	0.003	0.71	0.0	0.05	12.56	0.00	2.097	9.65	0.02	3.9	96.1	0.0	-0.22	1.31	0.69	0.76	1.73	42292	5772	10	0	0	0	0	logfile
✔	6ZXL	11524	2021-01-07	2020-07-29	4.2	4.71	—	4.5	0.017	1.38	0.0	0.07	11.91	0.01	1.897	31.52	0.10	8.0	91.6	0.4	-2.81	0.75	0.77	—	4.5	0.003	0.73	0.0	0.05	12.33	0.00	1.971	14.20	0.00	4.6	95.4	0.0	-0.38	0.79	0.75	0.77	—	42172	5772	10	0	0	0	0	logfile
✔	6ZWV	11497	2021-01-06	2020-07-28	3.5	3.91	3.55	3.7	0.009	1.34	0.0	0.10	15.28	0.01	2.025	2.97	1.74	5.0	95.0	0.0	-1.71	0.83	0.82	2.19	3.7	0.005	0.63	0.0	0.05	14.45	0.00	2.171	8.37	0.08	4.7	95.3	0.0	-0.16	0.70	0.84	0.84	2.38	24015	2955	21	0	63	0	0	logfile
✔	7JK4	22361	2021-01-06	2020-07-27	3.4	3.91	3.45	3.6	0.006	0.95	0.0	0.05	17.55	0.01	2.102	4.61	0.32	4.1	95.9	0.0	-2.88	0.87	0.88	2.64	3.6	0.003	0.55	0.0	0.04	16.82	0.00	1.989	7.65	0.00	2.2	97.8	0.0	1.78	1.04	0.88	0.88	2.38	21717	2531	13	68	8	0	0	logfile
✔	7JK2	22359	2021-01-06	2020-07-27	3.2	3.80	3.18	3.4	0.006	0.92	0.0	0.05	17.56	0.01	2.092	4.03	0.23	3.5	96.5	0.0	-3.50	0.85	0.86	2.35	3.4	0.002	0.57	0.0	0.04	16.16	0.00	2.079	6.98	0.00	2.5	97.5	0.0	1.64	1.09	0.86	0.86	2.13	21619	2523	13	66	8	0	0	logfile
✔	7JK6	22363	2021-01-06	2020-07-27	4.0	4.53	3.98	4.0	0.008	1.27	0.0	0.07	14.68	0.01	1.967	5.90	0.24	4.4	95.6	0.0	-2.89	0.87	0.78	—	4.0	0.003	0.67	0.0	0.04	13.93	0.00	1.994	10.79	0.00	2.8	97.2	0.0	1.16	1.21	0.88	0.79	—	15161	1887	9	0	6	0	0	logfile
✔	7JK3	22360	2021-01-06	2020-07-27	3.4	4.04	3.41	3.5	0.005	0.87	0.0	0.05	17.58	0.01	1.709	3.67	0.18	3.1	96.9	0.0	-3.87	0.89	0.87	2.19	3.6	0.004	0.57	0.0	0.04	17.01	0.00	1.911	8.15	0.00	3.0	97.0	0.0	1.57	1.02	0.90	0.88	2.22	21661	2528	13	66	8	0	0	logfile

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