Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R7S	24302	2021-08-10	2021-06-25	4.23	4.48	—	4.3	0.004	0.96	0.0	0.06	15.64	0.01	2.294	6.49	0.03	9.3	90.6	0.1	-3.16	0.77	0.68	—	4.3	0.003	0.77	0.0	0.05	14.93	0.01	2.126	20.68	0.03	9.7	90.2	0.0	-1.84	1.75	0.81	0.78	—	33239	4207	14	0	12	0	0	logfile
✔	7F62	31470	2021-08-07	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.27	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.65	0.0	0.04	15.65	0.00	2.183	12.49	0.55	9.5	90.5	0.0	-2.15	1.84	0.70	0.77	1.22	3321	427	3	0	0	0	0	logfile
✔	7F63	31471	2021-08-07	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.45	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.019	1.94	0.0	0.05	16.52	0.01	1.747	34.30	0.00	13.3	86.2	0.5	-2.83	1.54	0.66	0.72	1.68	3375	429	3	0	0	0	0	logfile
✔	7F4G	31450	2021-08-10	2021-06-18	2.78	3.30	—	3.2	0.017	1.11	4.0	0.07	14.67	0.01	1.898	14.79	1.43	8.7	91.0	0.3	-3.97	0.69	0.81	3.30	3.2	0.003	0.68	0.0	0.05	16.85	0.00	2.149	11.14	2.72	5.3	94.7	0.0	-0.29	1.21	0.67	0.80	2.46	27957	3491	17	0	5	0	0	logfile
✔	7N9C	24256	2021-08-09	2021-06-17	3.71	2.99	—	2.9	0.013	1.63	11.0	0.11	13.88	0.01	2.185	13.27	0.21	2.6	97.4	0.0	-0.75	0.65	0.76	1.80	2.9	0.005	0.65	0.0	0.04	15.49	0.00	2.121	12.32	0.17	4.9	95.1	0.0	-0.83	0.50	0.66	0.76	1.76	22734	3019	5	0	0	0	0	logfile
✔	7F3T	31440	2021-08-07	2021-06-17	3.69	3.94	—	3.9	0.051	2.15	0.0	0.06	18.39	0.00	1.596	19.48	0.33	5.2	94.5	0.3	0.40	0.68	0.81	1.54	3.9	0.004	0.83	0.0	0.04	17.64	0.00	2.218	12.21	0.33	3.4	96.6	0.0	2.35	1.62	0.66	0.81	1.27	5632	660	4	0	2	0	0	logfile
✔	7N9B	24255	2021-08-09	2021-06-17	3.8	3.45	—	3.5	0.013	1.41	3.0	0.10	13.97	0.01	2.070	14.26	0.07	3.1	96.9	0.0	-0.41	0.70	0.82	2.26	3.5	0.003	0.60	0.0	0.04	15.57	0.00	2.185	8.87	0.15	3.0	97.0	0.0	-0.08	0.48	0.69	0.79	2.08	24575	3197	5	0	0	0	0	logfile
✘	7N9A	24253	2021-08-07	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.75	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2431	312	2	0	0	0	0	logfile
✔	7F3U	31441	2021-08-07	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	22.41	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.004	0.89	0.0	0.04	15.46	0.00	2.152	16.97	1.39	6.4	93.6	0.0	3.09	1.32	0.59	0.79	—	4274	656	2	0	0	0	0	logfile
✔	7N98	24252	2021-08-07	2021-06-17	3.5	3.77	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.005	0.76	0.0	0.05	17.06	0.01	2.248	9.82	0.54	8.9	91.1	0.0	-0.13	0.49	0.52	0.83	0.97	3625	473	1	0	0	0	0	logfile
✔	7N9E	24257	2021-08-09	2021-06-17	3.52	3.03	—	2.9	0.011	1.15	3.0	0.09	13.10	0.01	2.143	11.45	0.04	2.6	97.4	0.0	-0.79	0.69	0.76	2.55	2.9	0.008	0.95	0.0	0.05	14.56	0.01	2.073	12.36	0.04	5.2	94.8	0.0	-0.39	0.42	0.70	0.77	2.26	21460	2866	4	0	0	0	0	logfile
✔	7N8N	24238	2021-08-08	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.26	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.77	0.0	0.04	29.16	0.01	2.108	26.03	0.62	7.3	92.4	0.3	-0.61	0.86	0.88	0.80	-0.33	11121	798	6	250	0	0	0	logfile
✔	7N8i	24237	2021-08-07	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.22	0.0	0.07	10.84	0.01	2.309	0.42	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.004	0.60	0.0	0.04	15.24	0.01	2.127	5.81	1.29	1.6	98.4	0.0	1.19	1.29	0.75	0.90	5.45	3600	445	3	0	5	0	0	logfile
✔	7N8H	24236	2021-08-10	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.59	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.006	0.78	0.0	0.05	14.39	0.01	1.901	4.82	1.40	2.8	97.2	0.0	0.65	0.99	0.76	0.85	4.83	32921	4356	36	0	60	771	0	logfile
✔	7F1R	31423	2021-08-07	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	7.84	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.005	0.76	0.0	0.04	15.06	0.01	2.180	12.81	3.98	3.9	96.1	0.0	0.33	1.63	0.64	0.79	2.47	6621	894	4	0	0	0	0	logfile
✔	7F1S	31424	2021-08-07	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.23	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.004	0.73	0.0	0.04	15.16	0.01	2.202	13.47	2.85	4.1	95.9	0.0	0.02	1.19	0.71	0.82	2.17	6209	847	4	0	0	0	0	logfile
✔	7F1Q	31422	2021-08-07	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.14	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.006	0.82	0.0	0.04	15.67	0.01	2.145	10.78	2.44	3.6	96.4	0.0	0.60	0.71	0.64	0.81	3.34	7123	938	4	0	0	0	0	logfile
✔	7N6i	23726	2021-08-08	2021-06-08	3.9	4.39	3.87	4.1	0.014	1.72	26.0	0.13	15.01	0.01	1.336	8.00	0.45	2.1	97.7	0.2	-0.48	0.59	0.61	0.72	4.2	0.003	0.74	0.0	0.04	17.43	0.00	1.957	11.88	0.33	3.0	97.0	0.0	0.38	2.28	0.68	0.82	1.00	18939	2358	19	34	14	0	0	logfile
✔	7N65	24195	2021-08-09	2021-06-07	4.15	4.35	—	4.2	0.011	1.18	0.0	0.06	14.11	0.01	1.935	34.50	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.005	0.82	0.0	0.05	12.69	0.00	2.115	21.38	0.05	11.8	88.2	0.0	-2.54	1.55	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile
✔	7N64	24193	2021-08-07	2021-06-07	4.2	3.94	—	3.9	0.009	1.05	0.0	0.06	15.15	0.01	2.157	36.15	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.003	0.79	0.0	0.05	13.79	0.00	2.174	17.01	0.00	10.9	89.1	0.0	-2.66	1.01	0.63	0.68	—	7189	906	7	0	7	0	0	logfile

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