Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7XoY	33363	2022-07-03	2022-05-01	4.25	4.23	4.31	4.3	0.006	0.73	0.0	0.05	12.27	0.00	1.257	45.15	8.23	10.2	88.7	1.2	-2.66	0.80	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13264	1832	8	0	4	0	0	logfile
✔	7Xo6	33338	2022-07-03	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.55	0.0	0.08	13.22	0.01	2.075	2.70	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.004	0.63	0.0	0.04	17.08	0.01	2.108	8.98	1.61	2.3	97.7	0.0	0.72	2.10	0.79	0.82	3.13	6440	786	5	0	5	0	0	logfile
✔	7XoH	33348	2022-07-03	2022-05-01	3.6	3.64	3.56	3.6	0.004	0.58	0.0	0.04	12.55	0.00	2.005	33.04	4.34	10.6	89.3	0.1	-4.16	0.72	0.83	2.38	3.6	0.003	0.68	0.0	0.04	14.70	0.00	2.116	9.33	0.07	7.4	92.6	0.0	-1.58	0.56	0.73	0.83	2.18	13524	1832	8	0	4	0	0	logfile
✘	7Xo7	33339	2022-07-06	2022-05-01	3.38	2.45	3.48	2.1	0.002	0.42	0.0	0.04	7.66	0.00	2.025	7.28	0.08	2.0	98.0	0.0	-3.21	0.62	0.55	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34209	4267	10	0	43	0	0	logfile
✔	7Xo8	33340	2022-07-07	2022-05-01	3.48	2.53	3.64	2.1	0.003	0.70	11.0	0.07	13.54	0.01	1.275	8.01	0.45	3.6	96.3	0.2	-2.72	0.58	0.47	0.91	2.1	0.004	0.74	0.0	0.05	16.27	0.01	2.129	11.37	0.31	4.8	95.2	0.0	-0.54	1.90	0.68	0.73	1.56	39126	4863	12	0	45	0	0	logfile
✔	7XNZ	33331	2022-07-03	2022-04-30	3.6	3.72	3.56	3.7	0.004	0.60	0.0	0.04	13.12	0.00	2.146	36.10	3.42	12.0	87.7	0.3	-3.94	0.74	0.83	2.51	3.7	0.003	0.67	0.0	0.04	15.11	0.00	2.113	10.37	0.36	4.2	95.8	0.1	-0.41	0.74	0.75	0.84	1.90	13524	1832	8	0	4	0	0	logfile
✔	7Xo4	33336	2022-07-06	2022-04-30	3.24	2.35	3.35	2.1	0.002	0.48	0.0	0.04	10.18	0.00	1.184	7.21	0.00	2.0	98.0	0.0	-2.83	0.52	0.40	1.77	2.1	0.004	0.67	0.0	0.05	14.95	0.00	2.121	9.45	0.37	4.4	95.6	0.0	-0.74	1.09	0.70	0.76	2.20	33410	4252	10	0	41	0	0	logfile
✔	7XNo	33321	2022-07-04	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.51	0.0	0.04	12.91	0.00	2.215	5.90	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.37	0.00	2.207	5.84	1.81	5.2	94.7	0.1	1.75	0.29	0.69	0.87	3.07	15888	2085	15	0	3	0	0	logfile
✔	7ZPP	14860	2022-07-06	2022-04-28	4.5	3.20	4.54	4.6	0.003	0.64	0.0	0.04	15.26	0.00	2.166	11.92	0.00	3.8	96.1	0.1	0.57	0.62	0.53	—	4.4	0.004	0.82	0.0	0.05	15.79	0.01	2.038	18.37	0.00	4.9	95.0	0.1	-0.59	1.74	0.67	0.66	—	33171	3903	20	80	0	0	0	logfile
✔	7UTN	26782	2022-07-03	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	18.54	0.00	2.166	8.21	0.29	1.3	98.7	0.0	0.88	0.28	0.82	0.84	3.73	8003	397	4	228	0	0	0	logfile
✔	7XLT	33286	2022-07-03	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.004	0.74	0.0	0.04	14.01	0.00	2.097	27.59	0.00	8.0	92.0	0.0	-2.48	1.74	0.74	0.73	—	4985	431	4	80	0	0	0	logfile
✔	7UR4	26704	2022-07-07	2022-04-21	3.34	4.06	3.35	3.8	0.005	0.60	0.0	0.05	12.96	0.01	2.034	1.55	0.42	3.8	96.2	0.0	-0.89	0.86	0.85	3.07	3.8	0.004	0.56	0.0	0.04	13.36	0.00	1.966	6.18	0.12	3.8	96.2	0.0	0.09	1.43	0.82	0.80	2.65	30066	1974	15	0	15	0	14784	logfile
✔	7XJH	33227	2022-07-03	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.01	0.00	2.218	7.48	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.007	0.66	0.0	0.04	15.48	0.00	2.095	7.35	0.49	2.8	97.2	0.0	0.86	0.38	0.66	0.81	2.18	7832	1027	5	0	1	0	0	logfile
✘	7XJi	33228	2022-07-03	2022-04-18	3.9	3.60	3.70	3.9	0.003	0.60	0.0	0.04	13.72	0.00	1.224	9.09	0.00	4.3	95.7	0.0	-0.25	0.61	0.78	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7851	1027	6	0	1	0	0	logfile
✔	7UPT	26675	2022-07-04	2022-04-16	3.5	4.20	3.67	4.0	0.004	0.95	0.0	0.13	19.20	0.00	1.944	10.58	11.28	7.3	92.6	0.1	-3.04	0.80	0.78	1.19	4.0	0.011	1.10	1.0	0.04	18.12	0.01	1.851	19.95	0.34	8.5	91.5	0.1	-1.08	1.80	0.81	0.81	1.04	13567	1692	13	0	21	0	0	logfile
✔	7UPR	26674	2022-07-03	2022-04-16	3.2	3.90	3.36	3.8	0.004	0.80	0.0	0.04	15.49	0.00	2.062	7.72	4.18	7.1	92.9	0.0	-3.02	0.74	0.78	1.45	3.8	0.003	0.68	0.0	0.04	16.66	0.00	1.899	10.31	0.47	8.2	91.8	0.0	-0.08	0.99	0.74	0.80	1.20	12780	1678	12	0	19	0	0	logfile
✔	7UPi	26667	2022-07-03	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.62	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.004	0.58	0.0	0.04	11.05	0.00	1.939	4.35	0.11	2.6	97.4	0.0	-0.29	2.21	0.91	0.90	4.11	7775	972	5	0	5	0	0	logfile
✔	7XiC	33202	2022-07-06	2022-04-12	3.3	3.72	3.48	3.6	0.009	1.11	0.0	0.08	11.24	0.01	1.933	11.19	1.40	5.6	92.5	1.8	-2.01	0.67	0.65	1.91	3.6	0.004	0.79	0.0	0.05	13.62	0.00	2.093	7.68	0.28	5.0	94.9	0.1	-0.55	1.43	0.72	0.77	1.85	29941	3706	31	0	71	0	0	logfile
✘	7ZK3	14753	2022-07-03	2022-04-12	2.85	3.09	2.81	3.0	0.002	0.52	0.0	0.04	13.34	0.00	1.159	14.68	1.09	4.7	95.3	0.0	1.70	0.77	0.80	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11898	1442	4	0	8	0	0	logfile
✔	7XiD	33203	2022-07-06	2022-04-12	3.3	3.75	3.57	3.6	0.008	1.01	2.0	0.08	12.97	0.01	1.822	9.54	1.12	6.0	92.4	1.6	-2.95	0.65	0.62	1.85	3.6	0.009	0.90	0.0	0.05	15.25	0.01	2.148	10.46	0.16	6.8	93.0	0.2	-1.23	1.77	0.71	0.75	1.79	34256	4153	33	0	91	0	0	logfile

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