Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LXX	23578	2021-05-03	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.18	0.0	0.06	10.07	0.01	2.519	0.38	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.2	0.003	0.63	0.0	0.04	14.29	0.00	2.172	8.69	2.81	2.7	97.3	0.0	-0.42	1.21	0.75	0.79	4.47	2740	352	5	0	4	0	0	logfile
✔	7LY2	23582	2021-05-06	2021-03-05	2.5	2.61	2.57	2.6	0.010	1.22	3.0	0.07	10.49	0.01	2.427	0.58	0.19	1.6	98.4	0.0	0.74	0.72	0.76	4.27	2.6	0.004	0.63	0.0	0.04	14.67	0.00	2.135	6.22	1.79	1.7	98.3	0.0	1.15	1.20	0.75	0.82	4.18	33444	4470	27	0	69	0	0	logfile
✔	7LY0	23581	2021-05-03	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.005	0.68	0.0	0.05	15.24	0.00	2.132	10.31	3.21	2.1	97.9	0.0	0.64	1.62	0.68	0.76	4.46	2805	354	5	0	6	0	0	logfile
✔	7LXW	23577	2021-05-03	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.41	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.005	0.71	0.0	0.05	15.44	0.01	2.225	10.57	1.90	2.3	97.7	0.0	0.27	1.16	0.79	0.84	5.27	2524	317	5	0	5	0	0	logfile
✔	7LXZ	23580	2021-05-06	2021-03-05	2.6	2.71	2.68	2.7	0.011	1.20	0.0	0.07	10.71	0.01	2.435	0.64	0.00	2.0	98.0	0.0	0.49	0.74	0.77	3.89	2.7	0.003	0.60	0.0	0.04	14.97	0.00	2.187	5.32	1.78	1.5	98.5	0.0	0.84	0.60	0.77	0.83	3.74	34353	4557	33	0	78	0	0	logfile
✔	7LXY	23579	2021-05-06	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.22	0.0	0.07	11.01	0.01	2.182	1.39	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.65	0.0	0.05	14.34	0.00	2.016	5.31	1.42	1.9	98.1	0.0	0.98	0.52	0.77	0.84	4.55	33987	4446	36	0	69	729	0	logfile
✔	7NRX	12552	2021-05-03	2021-03-04	3.55	3.48	3.32	3.7	0.010	1.20	0.0	0.09	12.76	0.01	2.356	6.37	0.00	8.7	91.3	0.0	-3.60	0.47	0.83	4.85	3.6	0.004	0.69	0.0	0.05	17.65	0.00	2.263	8.97	0.75	6.7	93.3	0.0	-3.22	1.53	0.45	0.81	4.74	5870	770	10	0	0	0	0	logfile
✔	7NRV	12551	2021-05-03	2021-03-04	3.0	3.20	2.72	3.2	0.007	1.15	0.0	0.07	12.81	0.03	2.385	3.52	0.00	6.0	94.0	0.0	-3.05	0.48	0.83	3.35	3.2	0.006	0.69	0.0	0.05	16.18	0.00	2.241	7.54	1.19	3.5	96.5	0.0	-2.74	0.52	0.41	0.82	3.27	5870	770	10	0	0	0	0	logfile
✔	7NRD	12535	2021-05-11	2021-03-03	4.36	3.70	4.24	3.7	0.011	1.33	0.0	0.06	16.83	0.01	2.081	9.22	0.50	10.5	89.3	0.2	-3.99	0.69	0.69	—	3.7	0.003	0.66	0.0	0.04	16.31	0.01	1.976	17.76	0.06	9.3	90.6	0.0	-1.77	1.30	0.69	0.69	—	204032	11163	82	5430	0	0	0	logfile
✔	7NRi	12546	2021-05-05	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.69	2.0	0.05	14.47	0.00	1.984	3.80	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.002	0.50	0.0	0.04	15.60	0.00	2.035	3.20	0.16	3.4	96.6	0.0	-0.18	0.71	0.76	0.85	3.55	23143	1504	6	0	1	0	11351	logfile
✔	7LWY	23560	2021-05-07	2021-03-02	4.0	3.83	—	3.8	0.007	0.87	0.0	0.06	13.34	0.00	2.150	12.18	0.18	8.9	91.1	0.0	-2.13	0.47	0.70	—	3.8	0.003	0.56	0.0	0.04	14.87	0.00	1.881	7.21	0.19	7.3	92.7	0.1	-0.73	0.59	0.49	0.81	—	124152	7974	12	0	0	0	61674	logfile
✔	7LWJ	23547	2021-05-05	2021-03-01	3.24	3.45	—	3.3	0.013	1.82	5.0	0.10	13.37	0.01	2.479	0.28	0.38	7.7	92.0	0.2	-1.79	0.67	0.63	1.86	3.3	0.005	0.69	0.0	0.04	14.90	0.01	2.157	10.30	0.19	4.4	95.6	0.0	-0.55	0.75	0.72	0.72	1.35	23847	3003	6	0	30	0	0	logfile
✔	7LWQ	23554	2021-05-04	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	6.0	0.09	13.64	0.01	2.529	0.05	0.90	6.5	93.1	0.4	-1.31	0.72	0.71	2.56	3.6	0.005	0.65	0.0	0.04	15.09	0.00	2.104	8.23	0.19	4.1	95.9	0.0	0.07	0.71	0.78	0.80	2.09	19190	2425	6	0	23	0	0	logfile
✔	7LWi	23546	2021-05-05	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	4.0	0.09	12.99	0.01	2.482	0.15	0.31	5.6	94.2	0.2	-1.24	0.72	0.74	3.32	3.3	0.003	0.62	0.0	0.04	15.11	0.00	2.153	6.46	0.15	3.4	96.6	0.0	0.40	1.28	0.73	0.80	2.39	23847	3003	6	0	30	0	0	logfile
✔	7LWN	23551	2021-05-05	2021-03-01	2.94	3.14	—	3.1	0.013	1.76	6.0	0.09	12.53	0.02	2.363	0.47	0.51	5.0	94.6	0.4	-1.03	0.70	0.77	3.83	3.1	0.004	0.63	0.0	0.04	15.11	0.01	2.204	5.93	1.81	3.2	96.8	0.0	0.37	0.64	0.73	0.84	3.12	23573	2980	11	0	37	0	0	logfile
✔	7LWU	23557	2021-05-05	2021-03-01	3.22	3.45	—	3.4	0.013	1.75	6.0	0.10	12.49	0.02	1.556	0.45	0.90	5.2	94.4	0.3	-0.81	0.71	0.76	3.59	3.4	0.003	0.57	0.0	0.04	14.07	0.00	2.036	4.79	0.24	3.2	96.8	0.0	0.63	1.64	0.75	0.84	2.79	23578	2980	6	0	35	0	0	logfile
✔	7LWW	23559	2021-05-05	2021-03-01	3.0	3.20	—	3.2	0.013	1.79	5.0	0.10	12.58	0.02	2.221	0.40	0.75	5.3	94.3	0.4	-0.78	0.73	0.78	3.94	3.2	0.005	0.64	0.0	0.05	14.92	0.00	2.151	5.86	1.96	3.4	96.5	0.0	0.39	0.65	0.78	0.86	3.35	23789	2982	18	0	50	0	0	logfile
✔	7LWP	23553	2021-05-05	2021-03-01	3.01	3.22	—	3.2	0.013	1.78	9.0	0.09	13.05	0.02	2.008	0.56	1.14	5.8	93.6	0.6	-1.19	0.69	0.73	2.85	3.2	0.003	0.59	0.0	0.04	14.63	0.00	2.109	5.63	0.20	3.7	96.2	0.0	0.47	0.71	0.74	0.82	2.55	23503	2982	6	0	31	0	0	logfile
✔	7LWo	23552	2021-05-05	2021-03-01	2.85	3.02	—	3.0	0.013	1.77	5.0	0.09	12.49	0.02	2.504	0.64	0.71	5.0	94.5	0.5	-0.90	0.68	0.77	3.47	3.0	0.005	0.67	0.0	0.05	15.32	0.00	2.132	4.92	1.73	3.3	96.6	0.1	0.27	0.66	0.72	0.85	3.28	23559	2980	9	0	36	0	0	logfile
✔	7LWM	23550	2021-05-05	2021-03-01	2.83	3.01	—	3.0	0.013	1.77	4.0	0.09	12.71	0.02	2.416	0.62	0.90	5.5	94.2	0.3	-0.90	0.70	0.78	3.84	3.0	0.003	0.59	0.0	0.04	15.14	0.00	2.194	5.14	1.69	3.2	96.8	0.0	0.48	0.68	0.73	0.85	3.37	23573	2980	9	0	37	0	0	logfile

• ← previous
• Page 2 of 244
• next →