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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HHY | 34807 | 2023-02-26 | 2022-11-17 | 2.77 | 2.97 | 2.80 | 2.9 | 0.004 | 0.67 | 0.0 | 0.05 | 13.80 | 0.00 | 2.074 | 14.92 | 0.00 | 5.6 | 94.3 | 0.1 | -1.92 | 0.55 | 0.54 | 1.90 | 2.9 | 0.004 | 0.63 | 0.0 | 0.04 | 15.98 | 0.00 | 2.069 | 14.29 | 2.42 | 4.9 | 95.1 | 0.0 | -1.52 | 0.41 | 0.60 | 0.61 | 1.68 | 27420 | 3483 | 16 | 0 | 32 | 0 | 0 | logfile |
✔ | 8F6E | 28881 | 2023-02-19 | 2022-11-16 | 3.8 | 4.02 | 3.70 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.52 | 0.00 | 2.060 | 5.75 | 0.00 | 5.4 | 94.2 | 0.4 | -0.77 | 0.72 | 0.75 | 2.20 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 15.85 | 0.00 | 2.051 | 11.78 | 0.44 | 6.6 | 92.9 | 0.4 | -1.37 | 1.20 | 0.71 | 0.72 | 2.30 | 10478 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8F68 | 28877 | 2023-02-19 | 2022-11-16 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9666 | 1198 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8F6J | 28885 | 2023-02-19 | 2022-11-16 | 3.7 | 3.93 | 3.62 | 3.9 | 0.003 | 0.51 | 0.0 | 0.04 | 14.39 | 0.01 | 2.084 | 6.56 | 0.00 | 6.0 | 93.6 | 0.4 | -0.50 | 0.73 | 0.81 | 1.81 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 16.27 | 0.00 | 2.066 | 10.40 | 0.17 | 5.4 | 94.3 | 0.3 | -0.51 | 0.49 | 0.72 | 0.78 | 1.74 | 10472 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8F6C | 28879 | 2023-02-23 | 2022-11-16 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19344 | 2396 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8HGG | 34738 | 2023-02-25 | 2022-11-14 | 3.64 | 3.02 | 3.51 | 3.5 | 0.003 | 0.62 | 0.0 | 0.05 | 11.94 | 0.01 | 2.296 | 4.09 | 5.46 | 3.4 | 96.6 | 0.0 | -1.38 | 0.66 | 0.66 | 2.36 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.32 | 0.00 | 2.112 | 8.48 | 0.18 | 4.8 | 95.2 | 0.0 | -0.86 | 0.62 | 0.68 | 0.70 | 2.22 | 25404 | 3238 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8HGH | 34739 | 2023-02-25 | 2022-11-14 | 4.16 | 3.79 | 4.05 | 3.7 | 0.003 | 0.62 | 2.0 | 0.05 | 12.05 | 0.01 | 2.298 | 3.92 | 5.83 | 3.4 | 96.6 | 0.0 | -1.78 | 0.76 | 0.69 | — | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.00 | 2.120 | 11.29 | 0.00 | 3.5 | 96.5 | 0.0 | -0.79 | 0.95 | 0.78 | 0.72 | — | 25512 | 3266 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8HG1 | 34731 | 2023-02-22 | 2022-11-13 | 2.8 | 2.33 | 2.94 | 2.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.21 | 0.00 | 2.100 | 5.91 | 0.13 | 5.0 | 94.7 | 0.3 | 0.19 | 0.79 | 0.79 | 3.89 | 2.1 | 0.003 | 0.60 | 0.0 | 0.04 | 17.61 | 0.00 | 2.184 | 7.02 | 1.39 | 4.7 | 95.1 | 0.2 | 0.39 | 0.95 | 0.81 | 0.82 | 3.39 | 14155 | 1642 | 6 | 36 | 2 | 0 | 0 | logfile |
✔ | 8F4R | 28857 | 2023-02-24 | 2022-11-11 | 3.06 | 3.36 | 3.18 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 10.45 | 0.00 | 2.212 | 7.54 | 3.22 | 1.2 | 98.7 | 0.0 | 1.85 | 0.75 | 0.81 | 2.80 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.45 | 0.00 | 2.078 | 7.71 | 0.28 | 1.2 | 98.8 | 0.0 | 1.93 | 1.23 | 0.72 | 0.87 | 2.65 | 23675 | 3097 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8F56 | 28861 | 2023-02-21 | 2022-11-11 | 2.98 | 3.18 | 3.09 | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 9.89 | 0.00 | 2.200 | 9.91 | 2.64 | 2.2 | 97.8 | 0.0 | 1.81 | 0.68 | 0.75 | 1.96 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.16 | 0.00 | 2.177 | 10.36 | 3.00 | 1.8 | 98.2 | 0.0 | 1.79 | 1.29 | 0.70 | 0.86 | 2.19 | 15631 | 2039 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F4N | 28855 | 2023-02-21 | 2022-11-11 | 2.95 | 3.15 | 3.04 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 9.96 | 0.00 | 2.278 | 8.28 | 2.12 | 1.9 | 98.1 | 0.0 | 2.00 | 0.72 | 0.80 | 3.23 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.74 | 0.00 | 2.085 | 9.21 | 2.18 | 1.4 | 98.6 | 0.0 | 2.01 | 1.26 | 0.69 | 0.85 | 2.77 | 15574 | 2043 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F3E | 28848 | 2023-02-24 | 2022-11-10 | 3.09 | 3.38 | 3.21 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 9.85 | 0.00 | 2.213 | 7.20 | 2.91 | 1.9 | 98.1 | 0.0 | 1.77 | 0.61 | 0.64 | 1.05 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.62 | 0.00 | 2.070 | 10.09 | 0.40 | 1.8 | 98.2 | 0.0 | 1.68 | 1.75 | 0.63 | 0.80 | 1.92 | 23627 | 3095 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F41 | 28849 | 2023-02-22 | 2022-11-10 | 3.9 | 3.12 | 3.87 | 3.3 | 0.005 | 0.93 | 0.0 | 0.05 | 13.03 | 0.01 | 1.432 | 21.12 | 0.39 | 9.4 | 90.6 | 0.0 | -1.29 | 0.54 | 0.55 | 0.90 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 16.24 | 0.00 | 2.073 | 11.40 | 0.36 | 7.2 | 92.8 | 0.0 | -0.80 | 1.89 | 0.60 | 0.70 | 1.39 | 57846 | 7464 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 8F3D | 28846 | 2023-02-22 | 2022-11-09 | 3.4 | 2.64 | 3.48 | 3.3 | 0.005 | 0.93 | 0.0 | 0.05 | 13.03 | 0.01 | 1.784 | 21.50 | 0.39 | 9.3 | 90.7 | 0.0 | -1.29 | 0.57 | 0.62 | 0.97 | 2.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.30 | 0.01 | 2.058 | 15.11 | 0.49 | 10.3 | 89.7 | 0.0 | -1.38 | 2.65 | 0.59 | 0.67 | 1.08 | 57846 | 7464 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 8HDS | 34679 | 2023-02-21 | 2022-11-06 | 3.57 | 3.28 | 3.59 | 3.4 | 0.007 | 1.11 | 0.0 | 0.06 | 10.70 | 0.01 | 2.312 | 4.13 | 0.63 | 10.9 | 89.1 | 0.0 | -6.20 | 0.55 | 0.77 | 2.49 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 16.09 | 0.00 | 2.083 | 10.70 | 0.96 | 9.7 | 90.3 | 0.0 | -2.59 | 1.26 | 0.56 | 0.78 | 1.67 | 53532 | 6864 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HDW | 34681 | 2023-02-22 | 2022-11-06 | 3.0 | 2.72 | 2.96 | 2.9 | 0.006 | 0.83 | 0.0 | 0.05 | 15.95 | 0.01 | 1.939 | 13.55 | 11.19 | 11.8 | 88.2 | 0.0 | -2.56 | 0.46 | 0.72 | 1.96 | 2.8 | 0.004 | 0.74 | 0.0 | 0.05 | 17.45 | 0.01 | 2.071 | 12.84 | 5.67 | 10.3 | 89.7 | 0.0 | -1.64 | 1.30 | 0.53 | 0.76 | 1.83 | 54552 | 7140 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F0A | 28754 | 2023-02-22 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✔ | 8HC7 | 34654 | 2023-02-18 | 2022-11-01 | 4.54 | 4.75 | 4.46 | 4.5 | 0.002 | 0.59 | 0.0 | 0.04 | 13.35 | 0.00 | 2.255 | 5.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.52 | 0.77 | 0.68 | — | 4.5 | 0.004 | 0.64 | 0.0 | 0.04 | 13.48 | 0.00 | 2.132 | 16.75 | 0.13 | 7.7 | 92.3 | 0.0 | -1.50 | 1.75 | 0.80 | 0.76 | — | 7373 | 919 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 8HC3 | 34650 | 2023-02-27 | 2022-11-01 | 4.35 | 4.29 | 4.25 | 3.9 | 0.002 | 0.56 | 0.0 | 0.05 | 13.15 | 0.00 | 2.206 | 5.53 | 0.00 | 3.5 | 96.5 | 0.0 | -0.31 | 0.81 | 0.74 | — | 3.9 | 0.005 | 0.71 | 0.0 | 0.05 | 13.14 | 0.00 | 2.047 | 15.55 | 0.00 | 5.5 | 94.5 | 0.0 | -0.71 | 1.79 | 0.82 | 0.79 | — | 31497 | 3954 | 22 | 0 | 54 | 0 | 0 | logfile |
✔ | 8HC5 | 34652 | 2023-02-20 | 2022-11-01 | 3.43 | 3.51 | 3.37 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 15.56 | 0.00 | 2.249 | 5.34 | 0.00 | 4.0 | 96.0 | 0.0 | -0.79 | 0.60 | 0.59 | 1.15 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 15.71 | 0.00 | 2.079 | 10.19 | 0.00 | 5.0 | 95.0 | 0.0 | -0.49 | 0.58 | 0.68 | 0.72 | 1.96 | 11400 | 1493 | 6 | 0 | 1 | 0 | 0 | logfile |