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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HJP | 0235 | 2023-08-17 | 2018-09-04 | 3.3 | 3.74 | 3.29 | 3.5 | 0.008 | 1.17 | 9.0 | 0.09 | 11.65 | 0.02 | 2.158 | 3.91 | 2.40 | 7.9 | 91.9 | 0.2 | -2.34 | 0.88 | 0.90 | 3.43 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 13.89 | 0.00 | 2.067 | 6.05 | 0.34 | 4.8 | 95.2 | 0.0 | 0.10 | 0.63 | 0.87 | 0.89 | 2.88 | 22134 | 2784 | 30 | 0 | 51 | 0 | 0 | logfile |
✔ | 6XS6 | 22301 | 2023-08-15 | 2020-07-15 | 3.7 | 2.21 | — | 2.2 | 0.004 | 0.83 | 0.0 | 0.05 | 14.26 | 0.01 | 2.240 | 4.49 | 0.00 | 6.1 | 93.9 | 0.0 | -1.99 | 0.57 | 0.59 | 2.30 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 2.160 | 8.43 | 0.15 | 5.1 | 94.9 | 0.0 | -0.95 | 0.37 | 0.57 | 0.59 | 2.19 | 18294 | 2357 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EG9 | 31109 | 2023-08-21 | 2021-03-24 | 3.7 | 4.62 | — | 3.7 | 0.008 | 1.15 | 54.0 | 0.08 | 16.39 | 0.01 | 1.514 | 21.01 | 4.37 | 6.7 | 92.6 | 0.7 | -3.68 | 0.58 | 0.30 | 0.60 | 3.6 | 0.004 | 0.74 | 0.0 | 0.04 | 16.96 | 0.00 | 1.964 | 15.42 | 0.23 | 5.6 | 94.3 | 0.1 | -0.60 | 1.40 | 0.78 | 0.66 | 0.72 | 84318 | 10176 | 49 | 142 | 11 | 0 | 0 | logfile |
✔ | 6RDX | 4834 | 2023-08-09 | 2019-04-12 | 3.9 | 3.93 | 3.89 | 3.9 | 0.010 | 1.05 | 0.0 | 0.06 | 15.03 | 0.01 | 2.050 | 6.72 | 0.55 | 5.8 | 94.0 | 0.2 | -4.32 | 0.63 | 0.79 | 1.46 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 16.65 | 0.00 | 1.897 | 14.37 | 0.25 | 4.5 | 95.4 | 0.1 | -0.39 | 1.24 | 0.64 | 0.81 | 1.10 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7JMN | 22397 | 2023-08-13 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.08 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 16.33 | 0.00 | 2.188 | 10.25 | 0.21 | 15.5 | 84.2 | 0.3 | -3.53 | 1.24 | 0.78 | 0.77 | 1.31 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 6RDV | 4832 | 2023-08-22 | 2019-04-12 | 3.1 | 3.20 | 3.21 | 3.2 | 0.011 | 1.07 | 1.0 | 0.06 | 15.38 | 0.01 | 2.059 | 6.62 | 0.67 | 5.8 | 93.9 | 0.3 | -3.97 | 0.63 | 0.81 | 2.49 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.36 | 0.00 | 1.884 | 11.41 | 0.36 | 4.3 | 95.5 | 0.2 | -0.27 | 0.56 | 0.64 | 0.83 | 2.05 | 33891 | 4502 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6RE5 | 4842 | 2023-08-09 | 2019-04-12 | 3.2 | 3.28 | — | 3.3 | 0.010 | 0.94 | 0.0 | 0.06 | 14.48 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.72 | 0.85 | 2.85 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.86 | 0.00 | 1.958 | 9.44 | 0.36 | 3.3 | 96.6 | 0.1 | 0.37 | 0.47 | 0.71 | 0.86 | 2.20 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6KNF | 0730 | 2023-08-10 | 2019-08-05 | 2.99 | 3.24 | — | 3.2 | 0.007 | 0.63 | 0.0 | 0.05 | 15.04 | 0.00 | 2.015 | 7.65 | 8.82 | 3.6 | 96.4 | 0.0 | -2.46 | 0.83 | 0.91 | 4.90 | 3.2 | 0.005 | 0.58 | 0.0 | 0.05 | 15.52 | 0.00 | 2.017 | 7.00 | 5.51 | 1.7 | 98.3 | 0.0 | -0.70 | 0.93 | 0.83 | 0.92 | 4.37 | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6RER | 4854 | 2023-08-22 | 2019-04-12 | 2.9 | 3.02 | 3.05 | 3.0 | 0.006 | 0.88 | 0.0 | 0.05 | 14.31 | 0.01 | 2.219 | 5.41 | 0.17 | 4.3 | 95.6 | 0.1 | -3.68 | 0.66 | 0.82 | 2.83 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 16.62 | 0.00 | 1.889 | 11.18 | 1.96 | 3.7 | 96.2 | 0.2 | -0.08 | 0.62 | 0.66 | 0.85 | 2.43 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6REB | 4848 | 2023-08-09 | 2019-04-12 | 3.2 | 3.24 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.06 | 14.40 | 0.01 | 2.140 | 5.40 | 0.37 | 4.8 | 95.1 | 0.1 | -3.95 | 0.70 | 0.84 | 3.18 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.71 | 0.00 | 1.917 | 9.74 | 0.39 | 3.8 | 96.1 | 0.1 | 0.00 | 1.56 | 0.71 | 0.87 | 2.62 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6REE | 4851 | 2023-08-09 | 2019-04-12 | 3.1 | 3.13 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 14.14 | 0.01 | 2.220 | 5.17 | 0.14 | 4.4 | 95.5 | 0.1 | -3.82 | 0.71 | 0.83 | 2.80 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.73 | 0.00 | 1.900 | 9.19 | 0.16 | 3.9 | 96.0 | 0.1 | 0.16 | 0.51 | 0.72 | 0.86 | 2.33 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6QDW | 4531 | 2023-08-22 | 2019-01-03 | 2.83 | 2.94 | 2.82 | 2.9 | 0.013 | 1.10 | 0.0 | 0.06 | 17.39 | 0.01 | 1.901 | 6.27 | 1.25 | 7.1 | 92.7 | 0.2 | -4.19 | 0.71 | 0.83 | 2.54 | 2.9 | 0.007 | 0.73 | 0.0 | 0.04 | 17.17 | 0.01 | 2.028 | 9.97 | 3.91 | 5.9 | 94.1 | 0.0 | -1.43 | 1.27 | 0.77 | 0.90 | 3.46 | 90690 | 3127 | 32 | 3081 | 0 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2023-08-09 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.15 | 0.00 | 2.112 | 11.82 | 0.29 | 2.8 | 97.2 | 0.0 | 0.86 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6RDY | 4835 | 2023-08-22 | 2019-04-12 | 3.6 | 3.65 | 3.64 | 3.6 | 0.011 | 1.08 | 0.0 | 0.06 | 15.17 | 0.01 | 2.050 | 7.19 | 0.51 | 6.0 | 93.8 | 0.3 | -4.36 | 0.60 | 0.81 | 1.96 | 3.6 | 0.004 | 0.66 | 0.0 | 0.04 | 16.69 | 0.00 | 1.887 | 12.89 | 0.48 | 5.0 | 94.9 | 0.1 | -0.77 | 1.24 | 0.61 | 0.82 | 1.44 | 33891 | 4502 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 7TDT | 25838 | 2023-08-13 | 2022-01-03 | 4.0 | 4.13 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 13.40 | 0.00 | 1.908 | 10.09 | 0.00 | 8.2 | 91.7 | 0.1 | -0.53 | 0.63 | 0.69 | — | 4.0 | 0.003 | 0.81 | 0.0 | 0.04 | 15.95 | 0.00 | 2.111 | 15.26 | 0.31 | 9.0 | 91.0 | 0.0 | -1.07 | 1.33 | 0.64 | 0.72 | — | 14444 | 1818 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XBY | 22122 | 2023-08-10 | 2020-06-07 | 3.79 | 3.90 | — | 3.8 | 0.007 | 1.08 | 21.0 | 0.06 | 15.32 | 0.01 | 1.614 | 7.16 | 0.41 | 5.5 | 94.4 | 0.2 | -5.89 | 0.73 | 0.84 | 2.00 | 3.8 | 0.006 | 0.79 | 0.0 | 0.05 | 16.72 | 0.00 | 2.049 | 14.07 | 0.70 | 6.7 | 93.2 | 0.1 | -1.04 | 0.69 | 0.74 | 0.86 | 1.64 | 57516 | 7765 | 37 | 0 | 15 | 0 | 0 | logfile |
✔ | 6RE6 | 4843 | 2023-08-09 | 2019-04-12 | 3.4 | 3.45 | 3.43 | 3.4 | 0.010 | 0.94 | 0.0 | 0.06 | 14.48 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.65 | 0.77 | 2.31 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.11 | 0.00 | 2.010 | 10.57 | 0.20 | 3.5 | 96.4 | 0.1 | 0.09 | 0.64 | 0.68 | 0.84 | 1.94 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 8D8Q | 27254 | 2023-08-09 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.07 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.10 | 0.00 | 2.150 | 16.15 | 0.00 | 4.9 | 95.1 | 0.0 | -0.72 | 1.04 | 0.67 | 0.76 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2023-08-18 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 7Y3G | 33594 | 2023-08-10 | 2022-06-10 | 2.77 | 2.32 | 2.89 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 16.44 | 0.01 | 2.029 | 7.02 | 3.04 | 3.9 | 96.1 | 0.0 | 0.49 | 0.79 | 0.81 | 2.50 | 2.1 | 0.004 | 0.62 | 0.0 | 0.04 | 16.74 | 0.00 | 2.080 | 5.55 | 3.28 | 3.4 | 96.6 | 0.0 | 0.84 | 1.16 | 0.80 | 0.82 | 1.90 | 7864 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |