Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UUX	42600	2024-08-05	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.92	1.0	0.05	16.31	0.01	2.106	2.82	3.47	5.8	94.1	0.1	-1.15	0.22	0.42	0.85	3.54	12084	1532	9	0	3	310	0	logfile
✔	8WZX	37963	2024-08-03	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.005	1.08	1.0	0.05	15.38	0.01	2.433	10.28	2.00	3.2	96.7	0.1	-4.33	0.43	0.55	0.89	5.60	7300	1020	20	0	0	0	0	logfile
✔	8R22	18833	2024-08-06	2023-11-02	3.9	3.57	3.81	3.6	0.004	0.67	0.0	0.04	14.65	0.01	2.098	10.00	0.00	9.3	90.7	0.0	-4.23	0.79	0.79	1.68	3.7	0.003	0.63	0.0	0.04	16.25	0.00	2.144	6.43	2.23	5.1	94.9	0.0	-0.64	0.51	0.78	0.78	1.09	15069	1950	5	0	1	0	0	logfile
✔	8R23	18834	2024-08-05	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.60	0.0	0.04	16.24	0.00	2.071	5.05	1.58	4.4	95.6	0.0	-0.32	0.42	0.80	0.84	1.20	11979	1548	4	0	2	0	0	logfile
✔	8WZB	37949	2024-08-06	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.006	0.80	0.0	0.05	18.01	0.01	2.464	14.02	4.49	4.8	95.1	0.0	-0.90	0.55	0.82	0.81	2.37	17594	2181	11	0	0	0	0	logfile
✔	8UUK	42588	2024-08-04	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.59	0.0	0.04	16.00	0.00	2.561	9.51	2.10	5.1	94.7	0.2	1.47	0.37	0.58	0.83	3.14	10242	1226	4	0	30	0	0	logfile
✔	8UUo	42592	2024-08-09	2023-11-01	3.9	4.75	4.09	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.003	0.62	0.0	0.04	14.80	0.00	2.431	8.91	1.31	4.5	95.5	0.0	-0.62	1.00	0.87	0.85	1.50	25465	3218	9	0	22	0	0	logfile
✔	8UUE	42580	2024-08-03	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.76	0.0	0.05	19.02	0.01	2.398	9.38	6.10	10.6	88.5	0.9	-1.93	0.95	0.79	0.81	1.54	8984	1150	4	0	0	0	0	logfile
✔	8UUN	42591	2024-08-09	2023-11-01	3.8	4.47	3.85	3.9	0.009	1.07	0.0	0.06	14.54	0.01	2.262	4.45	0.00	4.9	95.1	0.0	-1.78	0.87	0.86	2.02	3.9	0.004	0.63	0.0	0.04	14.39	0.00	2.348	6.69	0.67	5.3	94.7	0.0	-0.59	0.96	0.87	0.86	1.69	25829	3254	11	0	29	0	0	logfile
✔	8R1F	18809	2024-08-06	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.58	0.0	0.04	15.02	0.00	2.163	5.17	1.49	2.9	97.1	0.0	1.19	2.08	0.70	0.68	1.26	16629	1025	5	0	3	0	8263	logfile
✔	8R1C	18807	2024-08-10	2023-11-01	2.2	2.38	2.25	2.4	0.008	0.87	2.0	0.05	14.58	0.01	2.093	4.37	1.07	2.9	97.1	0.0	0.17	0.67	0.83	5.11	2.4	0.003	0.54	0.0	0.04	14.90	0.00	2.515	3.90	1.28	2.7	97.3	0.0	0.42	0.76	0.65	0.86	5.04	30426	3867	12	0	30	0	0	logfile
✔	8UUL	42589	2024-08-09	2023-11-01	3.2	4.04	3.32	3.7	0.009	1.04	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.003	0.59	0.0	0.04	14.10	0.00	2.488	4.32	0.77	3.9	96.1	0.0	-0.29	0.36	0.85	0.84	2.21	25891	3254	13	0	33	0	0	logfile
✔	8WZJ	37954	2024-08-06	2023-11-01	2.7	2.61	2.75	2.7	0.014	1.68	0.0	0.08	14.34	0.00	2.368	1.63	0.99	4.0	95.8	0.2	-1.14	0.57	0.73	5.36	2.7	0.003	0.59	0.0	0.04	16.62	0.00	2.563	4.64	2.04	3.1	96.9	0.0	0.71	0.51	0.75	0.86	4.83	16368	1988	8	0	8	0	0	logfile
✔	8WZK	37955	2024-08-06	2023-11-01	2.4	2.26	2.50	2.4	0.016	1.80	0.0	0.08	14.60	0.01	2.379	2.54	1.87	3.8	96.0	0.2	-1.19	0.51	0.67	5.64	2.4	0.003	0.69	0.0	0.04	15.98	0.00	2.546	5.42	2.16	3.2	96.8	0.0	0.64	1.17	0.71	0.81	4.20	16368	1988	8	0	8	0	0	logfile
✔	8WZi	37953	2024-08-09	2023-11-01	3.0	3.43	3.03	3.2	0.013	1.56	1.0	0.08	15.51	0.01	2.202	7.57	3.25	4.0	95.9	0.1	-0.80	0.79	0.79	2.21	3.2	0.004	0.67	0.0	0.05	15.03	0.00	2.415	8.30	2.69	4.0	96.0	0.0	-0.67	0.35	0.79	0.81	2.00	24971	3078	27	0	69	0	0	logfile
✔	8R1D	18808	2024-08-10	2023-11-01	2.37	2.35	2.20	2.4	0.008	0.85	0.0	0.05	14.94	0.01	2.112	5.41	1.11	2.9	97.1	0.0	-0.07	0.70	0.86	5.08	2.4	0.003	0.57	0.0	0.05	15.31	0.00	2.406	3.75	2.64	2.7	97.3	0.0	0.22	0.24	0.73	0.89	4.97	30493	3876	18	0	30	43	0	logfile
✔	8UUM	42590	2024-08-09	2023-11-01	3.9	4.70	4.04	4.0	0.008	1.04	0.0	0.06	14.96	0.01	2.241	5.42	0.14	5.4	94.6	0.0	-1.71	0.88	0.86	1.69	4.0	0.005	0.67	0.0	0.04	14.62	0.00	2.321	10.55	0.95	5.4	94.6	0.0	-0.74	0.38	0.88	0.86	1.41	25786	3247	10	0	30	0	0	logfile
✔	8WZH	37952	2024-08-06	2023-11-01	3.7	3.32	3.68	3.6	0.013	1.38	0.0	0.07	15.63	0.00	2.311	6.48	0.93	4.8	95.2	0.0	-2.69	0.64	0.73	3.54	3.6	0.003	0.58	0.0	0.04	16.89	0.00	2.394	5.14	2.34	3.7	96.3	0.0	0.48	1.14	0.77	0.83	3.04	16368	1988	8	0	8	0	0	logfile
✔	8WZ2	37944	2024-08-04	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.006	1.25	2.0	0.05	15.69	0.00	2.001	15.09	1.80	2.5	97.5	0.0	0.51	4.13	0.70	0.85	2.96	9355	1202	6	0	0	0	0	logfile
✔	8UTP	42545	2024-08-08	2023-10-31	3.2	2.45	3.19	3.3	0.005	0.85	1.0	0.05	18.53	0.01	1.930	4.23	0.94	4.2	95.4	0.4	-0.04	0.65	0.85	3.10	3.3	0.003	0.60	0.0	0.04	17.32	0.00	1.903	4.78	2.69	3.5	96.3	0.1	0.87	1.74	0.65	0.86	2.82	23792	2982	16	2	11	0	0	logfile

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