Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UTN	42543	2024-08-08	2023-10-31	3.1	2.25	3.07	2.2	0.006	0.89	2.0	0.05	18.88	0.01	1.920	5.11	1.64	3.7	95.5	0.8	-0.26	0.63	0.82	3.47	2.2	0.003	0.60	0.0	0.04	17.22	0.00	1.972	5.02	2.69	3.6	96.4	0.1	0.72	0.95	0.63	0.83	3.14	23784	2981	16	2	11	0	0	logfile
✔	8UTY	42553	2024-08-08	2023-10-31	3.3	2.75	3.27	3.5	0.006	0.88	0.0	0.05	18.43	0.01	1.941	5.20	1.45	4.4	94.8	0.8	-0.11	0.56	0.83	2.61	3.4	0.006	0.98	3.0	0.05	16.61	0.00	1.827	8.60	2.58	3.9	95.9	0.1	0.70	1.37	0.57	0.84	2.35	23765	2979	16	2	11	0	0	logfile
✔	8UTF	42539	2024-08-04	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.59	0.0	0.05	15.98	0.00	2.491	3.53	2.24	1.5	98.5	0.0	1.36	1.46	0.77	0.86	2.95	9827	1248	15	0	9	134	0	logfile
✔	8WYi	37929	2024-08-02	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.003	0.84	0.0	0.04	19.03	0.00	2.361	10.47	6.88	11.0	88.1	0.9	-0.27	1.22	0.61	0.76	0.82	4659	589	8	0	0	0	0	logfile
✔	8UTo	42544	2024-08-08	2023-10-31	3.2	2.44	3.17	3.3	0.005	0.81	0.0	0.05	18.60	0.01	1.940	3.67	0.59	3.8	95.9	0.3	-0.12	0.64	0.84	3.00	3.3	0.003	0.60	0.0	0.04	17.23	0.00	1.932	5.02	2.38	3.4	96.4	0.2	0.63	0.94	0.65	0.86	2.75	23792	2982	16	2	11	0	0	logfile
✔	8UTT	42549	2024-08-08	2023-10-31	3.1	2.46	3.19	3.3	0.007	0.96	0.0	0.06	19.18	0.01	1.190	6.78	1.60	5.3	94.3	0.4	-0.45	0.60	0.84	2.90	3.3	0.003	0.65	0.0	0.04	17.28	0.00	1.928	5.63	2.07	4.1	95.7	0.1	1.04	0.54	0.60	0.86	2.62	23744	2974	16	2	11	0	0	logfile
✔	8R0E	18790	2024-08-11	2023-10-31	2.7	2.36	2.70	2.4	0.012	1.20	1.0	0.09	14.99	0.01	1.990	5.21	0.07	11.9	88.1	0.0	-4.61	0.68	0.78	3.53	2.5	0.003	0.63	0.0	0.04	17.50	0.00	2.456	3.37	2.48	5.9	94.1	0.0	-0.41	2.18	0.67	0.79	2.98	32056	4524	6	0	0	0	0	logfile
✔	8WY5	37916	2024-08-06	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.003	0.69	0.0	0.05	19.58	0.00	2.363	8.65	1.35	5.7	93.9	0.3	-1.15	1.03	0.65	0.76	1.98	16038	1770	12	76	4	0	0	logfile
✔	8WY8	37919	2024-08-11	2023-10-30	3.1	3.36	1.76	3.3	0.002	0.55	0.0	0.04	17.36	0.00	2.028	12.27	0.20	2.2	97.8	0.0	1.01	0.72	0.82	2.25	3.3	0.003	0.58	0.0	0.04	17.80	0.00	2.494	10.23	2.19	2.3	97.7	0.0	1.08	0.58	0.78	0.87	2.07	31412	3757	4	0	0	0	0	logfile
✔	8WYF	37926	2024-08-08	2023-10-30	2.85	3.14	2.98	3.1	0.004	0.55	0.0	0.04	18.78	0.00	1.949	35.35	3.37	2.2	97.8	0.0	1.33	0.71	0.84	3.20	3.1	0.003	0.57	0.0	0.04	18.27	0.00	2.436	8.87	2.13	1.6	98.4	0.0	1.06	0.91	0.71	0.84	2.97	21408	2553	9	0	4	0	0	logfile
✔	8WYE	37925	2024-08-07	2023-10-30	2.49	3.06	2.66	3.0	0.003	0.52	0.0	0.04	18.24	0.00	2.044	9.50	4.05	1.8	98.2	0.0	0.91	0.78	0.83	3.41	3.0	0.004	0.71	0.0	0.04	17.99	0.00	2.252	8.74	2.22	1.6	98.4	0.0	1.17	0.30	0.66	0.81	3.34	21232	2553	5	0	0	0	0	logfile
✔	8QZX	18784	2024-08-04	2023-10-30	3.01	3.26	3.15	3.3	0.015	1.92	8.0	0.13	16.90	0.01	2.405	9.74	7.06	3.4	96.5	0.1	1.06	0.63	0.70	2.32	3.3	0.003	0.62	0.0	0.04	16.25	0.00	2.424	9.01	2.89	1.9	98.1	0.0	0.43	0.71	0.64	0.74	2.03	11708	1464	9	0	7	0	0	logfile
✔	8UT9	42534	2024-08-05	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.16	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.6	0.005	1.00	0.0	0.05	15.48	0.00	1.947	9.48	2.85	4.0	96.0	0.0	-0.53	0.46	0.68	0.80	2.26	12707	1450	17	0	249	0	0	logfile
✔	8WYC	37923	2024-08-08	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.62	0.0	0.04	18.86	0.00	2.414	10.07	4.22	3.2	96.8	0.0	0.00	0.42	0.72	0.87	2.67	22385	2680	10	0	4	0	0	logfile
✔	8WY9	37920	2024-08-07	2023-10-30	2.57	3.04	2.67	2.9	0.002	0.51	0.0	0.04	17.96	0.00	2.086	9.74	3.47	1.8	98.2	0.0	0.70	0.84	0.89	3.35	2.9	0.003	0.57	0.0	0.04	17.65	0.00	2.543	7.55	2.43	1.7	98.3	0.0	1.18	0.92	0.78	0.87	3.24	20129	2419	4	0	0	0	0	logfile
✔	8USX	42522	2024-08-06	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.004	0.66	0.0	0.05	11.33	0.00	2.373	8.13	0.00	7.1	92.4	0.5	0.05	0.94	0.66	0.64	—	17926	2967	4	0	0	0	0	logfile
✔	8UT8	42533	2024-08-05	2023-10-30	3.2	3.53	3.40	3.5	0.007	1.15	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.60	0.00	2.438	10.10	2.77	4.6	95.3	0.1	-0.61	0.59	0.68	0.78	2.56	12707	1450	17	0	249	0	0	logfile
✔	8UT6	42531	2024-08-05	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.95	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.005	0.69	0.0	0.05	15.14	0.00	2.407	6.94	1.57	4.1	95.9	0.0	-0.37	1.10	0.61	0.80	4.45	13046	1460	11	0	257	0	0	logfile
✔	8WY0	37914	2024-08-02	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.83	0.0	0.04	17.82	0.00	2.540	11.10	6.76	7.2	92.8	0.0	-0.61	0.64	0.61	0.75	1.38	4656	587	9	0	1	0	0	logfile
✔	8UT7	42532	2024-08-05	2023-10-30	2.7	2.95	2.77	2.9	0.006	1.10	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.005	0.63	0.0	0.04	14.25	0.00	2.430	5.08	1.17	2.8	97.2	0.0	-0.12	0.82	0.68	0.86	4.95	13046	1460	11	0	257	0	0	logfile

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