Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WYC	37923	2024-08-08	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.62	0.0	0.04	18.86	0.00	2.414	10.07	4.22	3.2	96.8	0.0	0.00	0.42	0.72	0.87	2.67	22385	2680	10	0	4	0	0	logfile
✔	8WXF	37905	2024-08-06	2023-10-29	4.0	4.27	4.10	4.2	0.003	0.71	0.0	0.05	17.29	0.01	2.188	15.21	0.75	4.8	95.1	0.1	-1.25	0.74	0.80	—	4.2	0.003	0.65	0.0	0.04	17.58	0.00	2.316	11.54	3.81	4.4	95.4	0.1	-0.45	0.37	0.78	0.81	—	16380	2190	3	0	0	0	0	logfile
✔	8QZP	18779	2024-08-09	2023-10-28	4.15	4.36	4.20	4.2	0.005	0.80	0.0	0.04	14.08	0.01	2.205	22.06	1.23	8.0	91.4	0.6	-1.51	0.78	0.75	—	4.2	0.004	0.75	0.0	0.04	13.81	0.01	2.371	16.68	0.00	7.7	92.2	0.1	-1.01	0.46	0.78	0.76	—	25393	3273	8	0	0	0	0	logfile
✔	8WXE	37904	2024-08-02	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8WX2	37898	2024-08-03	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.171	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.84	0.0	0.05	16.72	0.01	2.547	11.44	3.99	7.7	92.3	0.0	0.78	0.63	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✔	8WX3	37899	2024-08-03	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.17	0.00	2.587	5.73	2.56	3.1	96.7	0.2	1.65	1.81	0.56	0.84	2.50	7498	974	2	0	0	0	0	logfile
✔	8WX0	37896	2024-08-05	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.005	0.68	0.0	0.05	18.84	0.00	2.464	8.36	6.75	5.1	94.8	0.2	0.20	0.22	0.68	0.83	1.75	13672	1782	7	15	0	0	0	logfile
✔	8WX5	37901	2024-08-02	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.004	0.76	0.0	0.04	16.95	0.00	2.543	12.05	2.99	6.2	93.8	0.0	0.72	1.01	0.52	0.81	1.19	3857	504	2	0	0	0	0	logfile
✔	8WX4	37900	2024-08-03	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.55	0.0	0.04	15.19	0.00	2.578	5.06	1.79	2.3	97.7	0.0	1.60	1.31	0.57	0.82	2.24	7512	976	6	0	0	0	0	logfile
✔	8QYM	18758	2024-08-08	2023-10-26	2.73	3.22	2.84	3.1	0.002	0.47	0.0	0.04	13.61	0.01	2.215	2.77	0.04	2.4	97.6	0.0	1.18	0.81	0.89	3.16	3.1	0.004	0.81	1.0	0.04	15.73	0.00	1.693	3.06	0.88	2.6	97.4	0.0	1.21	0.90	0.80	0.90	2.80	22235	2848	14	0	18	0	0	logfile
✔	8WWP	37895	2024-08-05	2023-10-26	3.12	3.73	3.38	3.6	0.003	0.51	0.0	0.04	17.17	0.00	2.262	9.97	0.07	4.3	95.5	0.2	0.23	0.74	0.72	0.91	3.6	0.004	0.65	0.0	0.05	17.73	0.00	2.470	10.88	7.25	5.0	95.0	0.0	0.28	0.95	0.68	0.69	1.10	13125	1749	3	0	0	0	0	logfile
✔	8QYN	18759	2024-08-10	2023-10-26	2.88	3.46	3.04	3.3	0.004	0.50	0.0	0.04	13.48	0.00	2.265	3.18	0.00	3.4	96.6	0.0	1.04	0.80	0.88	3.11	3.3	0.003	0.53	0.0	0.04	15.59	0.00	2.485	2.89	0.99	2.9	97.1	0.0	1.25	1.24	0.81	0.90	2.75	29115	3731	18	0	22	0	0	logfile
✔	8URW	42502	2024-08-10	2023-10-26	2.79	3.49	2.93	3.3	0.003	0.56	0.0	0.04	20.95	0.00	2.226	6.27	4.41	6.1	93.5	0.3	-0.96	0.87	0.91	2.20	3.3	0.004	0.63	0.0	0.04	20.39	0.00	2.083	4.71	2.35	6.7	93.1	0.3	-0.63	0.94	0.81	0.87	2.18	29896	3574	13	94	4	0	0	logfile
✔	8QZ8	18772	2024-08-08	2023-10-26	3.13	3.36	3.18	3.4	0.003	0.46	0.0	0.04	18.09	0.00	1.861	3.62	0.09	3.3	96.5	0.1	1.13	0.67	0.84	3.19	3.4	0.003	0.50	0.0	0.04	17.76	0.00	2.083	2.96	1.37	4.2	95.8	0.0	0.79	2.00	0.71	0.86	3.36	22629	1356	8	42	5	0	11077	logfile
✔	8QYJ	18755	2024-08-07	2023-10-26	2.73	3.16	2.80	3.0	0.002	0.44	0.0	0.04	13.65	0.00	2.235	2.65	0.00	2.0	98.0	0.0	1.76	0.79	0.88	3.08	3.0	0.003	0.52	0.0	0.04	15.91	0.00	2.208	2.21	1.28	2.3	97.7	0.0	1.79	0.28	0.76	0.88	2.93	19402	2498	13	0	3	0	0	logfile
✔	8QZ9	18773	2024-08-08	2023-10-26	2.95	3.51	3.11	3.3	0.003	0.48	0.0	0.04	13.37	0.00	2.202	3.64	0.00	4.1	95.9	0.0	0.82	0.79	0.87	3.07	3.3	0.003	0.57	0.0	0.04	15.61	0.00	2.481	2.95	1.46	4.3	95.7	0.0	0.95	0.90	0.76	0.85	2.60	24217	3213	16	0	21	0	0	logfile
✔	8URQ	42497	2024-08-03	2023-10-26	3.3	3.57	3.32	3.6	0.017	1.25	1.0	0.06	21.28	0.01	1.769	18.16	4.61	10.8	88.9	0.3	-3.76	0.71	0.71	1.02	3.6	0.005	0.75	0.0	0.04	20.87	0.00	1.835	10.54	4.94	12.7	87.3	0.0	-3.06	0.52	0.72	0.74	0.97	8569	993	6	31	1	0	0	logfile
✔	8QZC	18774	2024-08-04	2023-10-26	3.29	3.49	3.36	3.5	0.004	0.81	0.0	0.05	13.36	0.01	2.246	3.27	0.00	4.4	95.6	0.0	-1.37	0.72	0.78	2.47	3.6	0.003	0.61	0.0	0.04	15.12	0.00	2.342	6.11	1.52	4.2	95.8	0.0	0.53	0.34	0.74	0.81	1.87	11468	1402	4	0	4	0	0	logfile
✔	8URB	42488	2024-08-08	2023-10-25	3.4	3.75	3.45	3.8	0.002	0.52	0.0	0.04	15.02	0.00	2.269	2.86	0.17	2.2	97.8	0.0	-0.61	0.73	0.82	3.32	3.8	0.003	0.51	0.0	0.04	15.76	0.00	2.155	2.82	1.68	3.5	96.5	0.0	0.36	1.13	0.71	0.82	2.34	22714	1359	7	41	2	0	11060	logfile
✔	8UR5	42482	2024-08-02	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.510	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	3.9	0.003	0.73	0.0	0.05	12.59	0.00	2.546	5.69	2.85	3.6	95.5	0.9	-0.79	1.64	0.69	0.79	3.40	4989	696	6	0	12	0	0	logfile

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